Contig 000811:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP018F08Sequence563000811 (2)ref|XP_009769024.1|3e-95PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3 isoform
JMSF029P20Sequence715000811 (2)ref|XP_009769022.1|1e-106PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3 isoform 772007182 (9)ref|XP_009769022.1|2e-11PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3 isoform

Alignment

This contig is upended


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rJMCP018F08+                               AGGTATCATGAAggaccagtTATTTAATTTTTAtgctaa
                      ____________________________________________________________
consensus                                  AGGTATCATGAACCTGGTCATATTTAATTTTTAACGATT
 
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rJMCP018F08+          cttTGGATGAAAAGTTCTCAAATCTGACTAGCTGATCCCAAAATGTATCTACCAAATATT
                      ____________________________________________________________
consensus             GAATGGATGAAAAGTTCTCAAATCTGACTAGCTGATCCCAAAATGTATCTACCAAATATT
 
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rJMCP018F08+          TAAGTAATACTTTCAAGGTTTCTGCCTTACGGATATACTCGAAAAGTTCCAGAACAGCAG
                      ____________________________________________________________
consensus             TAAGTAATACTTTCAAGGTTTCTGCCTTACGGATATACTCGAAAAGTTCCAGAACAGCAG
 
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rJMCP018F08+          AATTCAAAAGATTATACCGATTGCCATTGGCAACAAAAGCATCAACAATCGGCTTCAAAA
                      ____________________________________________________________
consensus             AATTCAAAAGATTATACCGATTGCCATTGGCAACAAAAGCATCAACAATCGGCTTCAAAA
 
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rJMCP018F08+          GATTGTTCTTCACTATATGATTCATTAAATGCTCATCATTACGAGAAATGAGAGTCCTCA
                      ____________________________________________________________
consensus             GATTGTTCTTCACTATATGATTCATTAAATGCTCATCATTACGAGAAATGAGAGTCCTCA
 
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rJMCP018F08+          TAAATCTAACAGCAGAAACTATGAGATATTTTTCTCTTCTTTGCGTCAGAAACAAAACTT
                      ____________________________________________________________
consensus             TAAATCTAACAGCAGAAACTATGAGATATTTTTCTCTTCTTTGCGTCAGAAACAAAACTT
 
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rJMCP018F08+          TGTCTATCACATTGTTAAGAAGAAAGTCGCACTTTATTCTATAAGGATGGTGCATGACAC
JMSF029P20+               TATCACATTGTTAAGAAGAAAGTCGCACTTTATTCTATAAGGATGGTGCATGACAC
                      ____________________________________________________________
consensus             TGTCTATCACATTGTTAAGAAGAAAGTCGCACTTTATTCTATAAGGATGGTGCATGACAC
 
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rJMCP018F08+          AGAAGCAGAGAAGATCACAAATGTTGAGTAGTATCTCGGGCTTTACACTGCTCTGCTTCT
JMSF029P20+           AGAAGCAGAGAAGATCACAAATGTTGAGTAGTATCTCGGGCTTTACACTGCTCTGCTTCT
                      ____________________________________________________________
consensus             AGAAGCAGAGAAGATCACAAATGTTGAGTAGTATCTCGGGCTTTACACTGCTCTGCTTCT
 
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rJMCP018F08+          CAGTTCCTTTGCTTTGAGATGTGGTGTTTGGAGGACAAGAAGATGTTATGGCATCAATTA
JMSF029P20+           CAGTTCCTTTGC-TTGAGATGTGGTGTTTGGAGGACAAGAAGATGTTATGGCATCAATTA
                      ____________________________________________________________
consensus             CAGTTCCTTTGCTTTGAGATGTGGTGTTTGGAGGACAAGAAGATGTTATGGCATCAATTA
 
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rJMCP018F08+          GTTGACCCAGGTGCTTCTCATAGAAAATTTCAACAATATTATCT                
JMSF029P20+           GTTGACCCAGGTGCTTCTCATAGAAAATTTCAACAATATTATCTCTCTGCGTCCCCGAAT
                      ____________________________________________________________
consensus             GTTGACCCAGGTGCTTCTCATAGAAAATTTCAACAATATTATCTCTCTGCGTCCCCGAAT
 
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JMSF029P20+           TATATGAATCCAAAAGACTGCGAAGAATTTCAAGGAACTGGCAGTGCATATCATCTCCAA
                      ____________________________________________________________
consensus             TATATGAATCCAAAAGACTGCGAAGAATTTCAAGGAACTGGCAGTGCATATCATCTCCAA
 
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JMSF029P20+           AATCTGTCAACATGCCTTTTACCAGAAGTCCAAACAAAGAAAGGCCTTCCTGACGAGTTA
                      ____________________________________________________________
consensus             AATCTGTCAACATGCCTTTTACCAGAAGTCCAAACAAAGAAAGGCCTTCCTGACGAGTTA
 
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JMSF029P20+           CATAAGAACGCAGAAGGTTTGGATCCTGATTCAAGAAAAGAATGAGAATGTCTGTCCCTG
                      ____________________________________________________________
consensus             CATAAGAACGCAGAAGGTTTGGATCCTGATTCAAGAAAAGAATGAGAATGTCTGTCCCTG
 
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JMSF029P20+           TTAATACGAGTTTTTTGTCTTGACTCTGCAACACATCACTGACAATGTCAAAGATGCCTT
                      ____________________________________________________________
consensus             TTAATACGAGTTTTTTGTCTTGACTCTGCAACACATCACTGACAATGTCAAAGATGCCTT
 
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JMSF029P20+           CATCGACAAGATCCTTGAAGAGCCGAAGCTGCTGGACCATCTGGAGGCTCTTACTTAAAG
                      ____________________________________________________________
consensus             CATCGACAAGATCCTTGAAGAGCCGAAGCTGCTGGACCATCTGGAGGCTCTTACTTAAAG
 
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JMSF029P20+           TACAGAACTCATGCAAGAAGCGTACCAAATTTTCCTTTGACTCCTCAGAAACTGCCGGAG
                      ____________________________________________________________
consensus             TACAGAACTCATGCAAGAAGCGTACCAAATTTTCCTTTGACTCCTCAGAAACTGCCGGAG
 
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JMSF029P20+           ATTTCAACAGCACAAATAATTCATGAATGAAGGTGCTATCATCTTTCAAAATGGATACAA
                      ____________________________________________________________
consensus             ATTTCAACAGCACAAATAATTCATGAATGAAGGTGCTATCATCTTTCAAAATGGATACAA
 
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JMSF029P20+           CATATGCGTTATTTGTATGTATTATGTTAGTAAGTGTAGCACCAGTTGCATCATCCAATG
                      ____________________________________________________________
consensus             CATATGCGTTATTTGTATGTATTATGTTAGTAAGTGTAGCACCAGTTGCATCATCCAATG