clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFN004O24 | Sequence | 474 | 000793 (5) | ref|XP_006349229.1| | 2e-39 | PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase-like [Solanum tuberosu | |||||
JMSF028F12 | Sequence | 653 | 000793 (5) | ref|XP_010323512.1| | 4e-103 | PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Solanum lycopersicum] | 728 | 000793 (5) | ref|XP_006349229.1| | 1e-95 | PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase-like [Solanum tuberosu |
JMSF036N14 | Sequence | 638 | 000793 (5) | ref|XP_009590085.1| | 301 | PREDICTED: uncharacterized protein LOC104087355 [Nicotiana tomentosiformis] | 715 | 000793 (5) | ref|XP_009791104.1| | 2e-86 | PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFN004O24+ GTGAGAACTGC
____________________________________________________________
consensus GTGAGAACTGC
. : . : . : . : . : . :
JMFN004O24+ TTAACAATTCAAATTTTGTTGTAACATAGTGACTAGATAAAAGGTTTAACAATGATTATT
rJMSF028F12- TGACTAGATAAAAGGTTTAACAATGATTATT
____________________________________________________________
consensus TTAACAATTCAAATTTTGTTGTAACATAGTGACTAGATAAAAGGTTTAACAATGATTATT
. : . : . : . : . : . :
JMFN004O24+ GCAACAAATATTTAGAATTTCTTTCCGCAATATGCCTTATTTTATTGATTGCTCTCATAT
rJMSF028F12- GCAACAAATATTTAGAATTTCTTTCCGCAATATGCCTTATTTTATTGATTGCTCTCATAT
rJMSF036N14- ACAAANATTTAGAATTTCTTTCCGCAATATGCCTTATTTTATTGATTGCTCTCANAT
____________________________________________________________
consensus GCAACAAATATTTAGAATTTCTTTCCGCAATATGCCTTATTTTATTGATTGCTCTCATAT
. : . : . : . : . : . :
JMFN004O24+ TTAGTTTCACCAAACAGCTTCTTATTGAAGGCAGAAGTTACATTTACAACACCACAACTC
rJMSF028F12- TTAGTTTCACCAAACAGCTTCTTATTGAAGGCAGAAGTTACATTTACAACACCACAACTC
rJMSF036N14- TTAGTTTCGCCAAACAGCTTCTTATTGAAGGCAGAAGTTACATTTACAANNCCACAANTC
____________________________________________________________
consensus TTAGTTTCACCAAACAGCTTCTTATTGAAGGCAGAAGTTACATTTACAACACCACAACTC
. : . : . : . : . : . :
JMFN004O24+ TACCAGATGACTTATTGAGTTTGTCTCTCAGAGGACTGGACATATCTCCTCCAAGCTTTG
rJMSF028F12- TACCAGATGACTTATTGAGTTTGTCTCTCAGAGGACTGGACATATCTCCTCCAAGCTTTG
rJMSF036N14- TACCAGATGACTTATTGAGTTTGTCTCTCAGAGGACTGGACATATCTCCTCCAAGCTTTG
____________________________________________________________
consensus TACCAGATGACTTATTGAGTTTGTCTCTCAGAGGACTGGACATATCTCCTCCAAGCTTTG
. : . : . : . : . : . :
JMFN004O24+ TCCCAGGCACTCAATGATATCCCCAGTGAGTGTGGATCTCCTCTTGTTCTCGAATGCAAG
rJMSF028F12- TCCCAGGCACTCAATGATATCCCCAGTGAGTGTGGATCTCCTCTTGTTCTCGAATGCAAG
rJMSF036N14- TCCCAGGCNCTCAATGATATCCCCAGTGAGTGTGGATCTCCTCTTGTTCTCGNATGCAAG
____________________________________________________________
consensus TCCCAGGCACTCAATGATATCCCCAGTGAGTGTGGATCTCCTCTTGTTCTCGAATGCAAG
. : . : . : . : . : . :
JMFN004O24+ GGCTGCCGCCTTTCTCAGTAGAGCAGAGCCAGCGATACACCCTAGTATTGTAGGATTAGT
rJMSF028F12- GGCTGCCGCCTTTCTCAGTAGAGCAGAGCCAGCGATACACCCTAGTATTGTAGGATTAGT
rJMSF036N14- GGCTGCCGCCTTTCTCAGTAGAGCAGANCCAGCGATACNCCCTAGTATTGTAGGATTANT
____________________________________________________________
consensus GGCTGCCGCCTTTCTCAGTAGAGCAGAGCCAGCGATACACCCTAGTATTGTAGGATTAGT
. : . : . : . : . : . :
JMFN004O24+ GACCGATTCTCCCTTAGCAGCTTGCTGGCGTGCCCAACATAGAAATACAGCAACGCTTCC
rJMSF028F12- GACCGATTCTCCCTTAGCAGCTTGCTGGCGTGCCCAACATAGAAATACAGCAACGCTTCC
rJMSF036N14- GANCGATTCTCCCTTAGCAGCTTGCTGGCGTGNCCAACATAGAAATACAGCAACGCTTCC
JMSF036N14+ CATAGAAATACAGCAACGCTTCC
____________________________________________________________
consensus GACCGATTCTCCCTTAGCAGCTTGCTGGCGTGCCCAACATAGAAATACAGCAACGCTTCC
. : . : . : . : . : . :
JMFN004O24+ TGAAAGTATATCACCCTGGCCACCACAGCGTCGAGGGGAGCCA
rJMSF028F12- TGAAAGTATATCACCCTGGCCACCACAGCGTCGAGGGGAGCCATATATGCTCACTGAACT
rJMSF036N14- TGAAAGTATATCACCCTGGCCACCACAGCGTCNAGGGGAGCCATATATGCTCACTGAACT
JMSF036N14+ TGAAAGTATATCACCCTGGCCACCACAGCGTCGAGGGGAGCCATATATGCTCACTGAACT
____________________________________________________________
consensus TGAAAGTATATCACCCTGGCCACCACAGCGTCGAGGGGAGCCATATATGCTCACTGAACT
. : . : . : . : . : . :
rJMSF028F12- AACTGTTTCACCATCGCTGATTAAATCAGATTTTCCTTTCCGTAAAATTGTCACGCCACC
rJMSF036N14- AACTGTTTCACCATCGCTGATTAAATCAGATTTTCCTTTCCGTAAAANTGTCACGCCACC
JMSF036N14+ AACTGTTTCACCATCGCTGATTAAATCAGATTTTCCTTTCCGTAAAATTGTCACGCCACC
____________________________________________________________
consensus AACTGTTTCACCATCGCTGATTAAATCAGATTTTCCTTTCCGTAAAATTGTCACGCCACC
. : . : . : . : . : . :
rJMSF028F12- AATCCCATTAACAAGGGATTTTAATTGTTCAGTTCCATTTTGATCATTAACTTCAGAATT
rJMSF036N14- NATCCCANTAACANGGGATTTTAATTGNTCAGTTCCATTTTGATCATTAACTTCAGAATT
JMSF036N14+ AATCCCATTAACAAGGGATTTTAATTGTTCAGTTCCATTTTGATCATTAACTTCAGAATT
____________________________________________________________
consensus AATCCCATTAACAAGGGATTTTAATTGTTCAGTTCCATTTTGATCATTAACTTCAGAATT
. : . : . : . : . : . :
rJMSF028F12- TAGCACACTTTGAACAAGACGTTTATACTCATTTATGTTGGGTGTCAGCACAGCCAAAGG
rJMSF036N14- TAGCACACTTTGAACAAGACGTTTATACTCATTTATGTTGGGTGTCAGCACAGCCAAAGG
JMSF036N14+ TAGCACACTTTGAACAAGACGTTTATACTCATTTATGTTGGGTGTCAGCACAGCCAAAGG
____________________________________________________________
consensus TAGCACACTTTGAACAAGACGTTTATACTCATTTATGTTGGGTGTCAGCACAGCCAAAGG
. : . : . : . : . : . :
rJMSF028F12- ATAGCCTCTAACCAGATCAAGACTATTTGTAACAAGAAAGAGTCCATCCCCATCTATAAC
rJMSF036N14- ATAGCCTCTAACCAGATCAAGACTATTTGTAACAAGAAAGAGTCCATCCCCATCTATAAC
JMSF036N14+ ATAGCCTCTAACCAGATCAAGACTATTTGTAACAAGAAAGAGTCCATCCCCATCTATAAC
____________________________________________________________
consensus ATAGCCTCTAACCAGATCAAGACTATTTGTAACAAGAAAGAGTCCATCCCCATCTATAAC
. : . : . : . : . : . :
rJMSF028F12- CATTGGGGACACCACAATCTCGTGCATGCTTTATGAT
rJMSF036N14- CATT-GGGACACCACAATCTCGTGCATGCTTTATGATGTTACTCACGCAG
JMSF036N14+ CATT-GGGACACCACAATCTCGTGCATGCTTTATGATGTTACTCACGCAGTCCAGGAGAA
JMSF028F12+ GACACCACAATCTCGTGCATGCTTTATGATGTTACTCACGCAGTCCAGGAGAA
____________________________________________________________
consensus CATT-GGGACACCACAATCTCGTGCATGCTTTATGATGTTACTCACGCAGTCCAGGAGAA
. : . : . : . : . : . :
JMSF036N14+ ATGGATCCCTTCCGAGACCTGGACCAATAACTAAGCAATCAAATCTCTCCATCCATTTAT
JMSF028F12+ ATGGATCCCTTCCGAGACCTGGACCAATAACTAAGCAATCAAATCTCTCCATCCATTTAT
____________________________________________________________
consensus ATGGATCCCTTCCGAGACCTGGACCAATAACTAAGCAATCAAATCTCTCCATCCATTTAT
. : . : . : . : . : . :
JMSF036N14+ CAACCTCTGCAATCACTTTGGCTGATATAGAGCTTTTATCCTCATCCCT
JMSF028F12+ CAACCTCTGCAATCACTTTGGCTGATATAGAGCTTTTATCCTCATCCCTAATGCTGTAAG
____________________________________________________________
consensus CAACCTCTGCAATCACTTTGGCTGATATAGAGCTTTTATCCTCATCCCTAATGCTGTAAG
. : . : . : . : . : . :
JMSF028F12+ ATTCTTCTAGAATAGGATGTACAATTAACTCAGGACTATAGCTTTTTATAACTGGAGCAG
____________________________________________________________
consensus ATTCTTCTAGAATAGGATGTACAATTAACTCAGGACTATAGCTTTTTATAACTGGAGCAG
. : . : . : . : . : . :
JMSF028F12+ CATCTTTTGTGCAAAATACATGAGACAAATCTGCACCAATTTTCAATGCTGAAATAGCAG
____________________________________________________________
consensus CATCTTTTGTGCAAAATACATGAGACAAATCTGCACCAATTTTCAATGCTGAAATAGCAG
. : . : . : . : . : . :
JMSF028F12+ AAAAGTATGGCGCCCCAGTGTACTCGCGACACCCACCTACAACAGCTATCTTACCAGCTT
____________________________________________________________
consensus AAAAGTATGGCGCCCCAGTGTACTCGCGACACCCACCTACAACAGCTATCTTACCAGCTT
. : . : . : . : . : . :
JMSF028F12+ GGCCTTTGTGCTTAGTTGAGTCGAGATTTGGGGTTATTGATCGTAAAACGCTGACAGCAT
____________________________________________________________
consensus GGCCTTTGTGCTTAGTTGAGTCGAGATTTGGGGTTATTGATCGTAAAACGCTGACAGCAT
. : . : . : . : . : . :
JMSF028F12+ CGACCTCCAATCTAGCCCCAATGCTCACTACAGACTGCATTCTAATAGTATTCTGATAGC
____________________________________________________________
consensus CGACCTCCAATCTAGCCCCAATGCTCACTACAGACTGCATTCTAATAGTATTCTGATAGC
. : . : . : . : . : . :
JMSF028F12+ CACAATTCTTAGCTTTCCCAGCTAAACCCCCCAAACACCTTAGCAAGAACTGCAGCCTTC
____________________________________________________________
consensus CACAATTCTTAGCTTTCCCAGCTAAACCCCCCAAACACCTTAGCAAGAACTGCAGCCTTC
. : . : . : . : . : . :
JMSF028F12+ TAGTTACAGCTGCTGAATTTGCCAGCGTTAAACTACTTCCAAATCAAAAGAGAATGCGGA
____________________________________________________________
consensus TAGTTACAGCTGCTGAATTTGCCAGCGTTAAACTACTTCCAAATCAAAAGAGAATGCGGA
. : . : . : . : . : . :
JMSF028F12+ TTCCGGTGGCTGAAGAAAGAAAGATGTGAGCTTTTCTTAAGTTCAAACTTCAAAGCGGGC
____________________________________________________________
consensus TTCCGGTGGCTGAAGAAAGAAAGATGTGAGCTTTTCTTAAGTTCAAACTTCAAAGCGGGC