Contig 000792:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006L19Sequence566000792 (7)ref|XP_009589035.1|1e-12PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon772009836 (7)ref|XP_010023766.1|3e-116PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon
JMFF038C09Sequence565000792 (7)ref|XP_009589035.1|1e-12PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon308009836 (7)ref|XP_009589035.1|2e-22PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon
JMFF043I07Sequence654000792 (7)ref|XP_009589035.1|3e-32PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon494009836 (7)ref|XP_009589035.1|5e-39PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon
JMFF048J09Sequence430000792 (7)564009836 (7)ref|XP_010326798.1|4e-15PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon
JMFS094E10Sequence626000792 (7)ref|XP_009589035.1|2e-25PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon
JMFS111H06Sequence627000792 (7)ref|XP_009589035.1|1e-24PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon
JMSF028F01Sequence668000792 (7)ref|XP_009589035.1|5e-31PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon737009836 (7)ref|XP_010023766.1|1e-115PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF028F01+ ACTGGCAA
                      ____________________________________________________________
consensus ACTGGCAA
 
. : . : . : . : . : . :
JMFF043I07+ AAACCCATGCAAATGGGGCAAATGTATGTATTGGGGGGAGCCCCGTACG
JMFS111H06+ AAACCCATGCAAATGGGGCAAATGTATGTA-TTGGGGGAGCNCCGTACG
JMFS094E10+ AAACCCATGCAAATGGGGCAAATGTATGTA-TTGGGGGAGCCCCGTACG
JMSF028F01+ TGCCCCAGGCAAAACCCATGCAAATGGGGCAAATGTATGTATTTGGGGGAGCCCCGTACG
                      ____________________________________________________________
consensus TGCCCCAGGCAAAACCCATGCAAATGGGGCAAATGTATGTATTTGGGGGAGCCCCGTACG
 
. : . : . : . : . : . :
JMFF043I07+ TATACGGGCAGCCACAAAAAGCCTTTGTAAGAGTTGAAAGCTGCACATGGGTTTCTATAC
JMFS111H06+ TATACGGGCAGCCACAAAAAGCCTTTGTAAGAGTTGAAAGCTGCACATGGGTTTCTATAC
JMFS094E10+ TATACGGGCAGCCACAAAAAGCCTTTGTAAGAGTTGAAAGCTGCACATGGGTTTCTATAC
JMFF006L19+ TTGAAAGCTGCACATGGGTTTCTATAC
JMFF038C09+ TGAAAGCTGCACATGGGTTTCTATAC
JMSF028F01+ TATACGGGCAGCCACAAAAAGCCTTTGTAAGAGTTGAAAGCTGCACATGGGTTTCTATAC
                      ____________________________________________________________
consensus TATACGGGCAGCCACAAAAAGCCTTTGTAAGAGTTGAAAGCTGCACATGGGTTTCTATAC
 
. : . : . : . : . : . :
JMFF043I07+ CAATGATTGATTCATAATCTTTCAAAATGTTATCAAGTGGTTTTGATTGATTTTTTGGCA
JMFS111H06+ CAATGATTGATTCATAATCTTTCAAAATGTTATCAAGTGGTTTTGATTGATTTTTTGGCA
JMFS094E10+ CAATGATTGATTCATAATCTTTCAAAATGTTATCAAGTGGTTTTGATTGATTTTTTGGCA
JMFF006L19+ CAATGATTGATTCATAATCTTTCAAAATGTTATCAAGTGGTTTTGATTGATTTTTTGGCA
JMFF038C09+ CAATGATTGATTCATAATCTTTCAAAATGTTATCAAGTGGTTTTGATTGATTTTTTGGCA
JMSF028F01+ CAATGATTGATTCATAATCTTTCAAAATGTTATCAAGTGGTTTTGATTGATTTTTTGGCA
                      ____________________________________________________________
consensus CAATGATTGATTCATAATCTTTCAAAATGTTATCAAGTGGTTTTGATTGATTTTTTGGCA
 
. : . : . : . : . : . :
JMFF043I07+ ACCCTTTCAACTTGGTCTGTTGCTTTTCTTGTGTTGTAGTATTGGTTTCTGTTCTTTCCA
JMFS111H06+ ACCCTTTCAACTTGGTCTGTTGCTTTTCTTGTGTTGTAGTATTGGTTTCTGTTCTTTCCA
JMFS094E10+ ACCCTTTCAACTTGGTCTGTTGCTTTTCTTGTGTTGTAGTATTGGTTTCTGTTCTTTCCA
JMFF006L19+ ACCCTTTCAACTTGGTCTGTTGCTTTTCTTGTGTTGTAGTATTGGTTTCTGTTCTTTCCA
JMFF038C09+ ACCCTTTCAACTTGGTCTGTTGCTTTTCTTGTGTTGTAGTATTGGTTTCTGTTCTTTCCA
JMFF048J09+ TGTTCTTTCCA
JMSF028F01+ ACCCTTTCAACTTGGTCTGTTGCTTTTCTTGTGTTGTAGTATTGGTTTCTGTTCTTTCCA
                      ____________________________________________________________
consensus ACCCTTTCAACTTGGTCTGTTGCTTTTCTTGTGTTGTAGTATTGGTTTCTGTTCTTTCCA
 
. : . : . : . : . : . :
JMFF043I07+ AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
JMFS111H06+ AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
JMFS094E10+ AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
JMFF006L19+ AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
JMFF038C09+ AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
JMFF048J09+ AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
JMSF028F01+ AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
                      ____________________________________________________________
consensus AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
 
. : . : . : . : . : . :
JMFF043I07+ GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
JMFS111H06+ GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
JMFS094E10+ GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
JMFF006L19+ GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
JMFF038C09+ GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
JMFF048J09+ GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
JMSF028F01+ GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
                      ____________________________________________________________
consensus GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
 
. : . : . : . : . : . :
JMFF043I07+ TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
JMFS111H06+ TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
JMFS094E10+ TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
JMFF006L19+ TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
JMFF038C09+ TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
JMFF048J09+ TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
JMSF028F01+ TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
                      ____________________________________________________________
consensus TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
 
. : . : . : . : . : . :
JMFF043I07+ AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
JMFS111H06+ AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
JMFS094E10+ AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
JMFF006L19+ AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
JMFF038C09+ AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
JMFF048J09+ AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
JMSF028F01+ AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
                      ____________________________________________________________
consensus AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
 
. : . : . : . : . : . :
JMFF043I07+ GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
JMFS111H06+ GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
JMFS094E10+ GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
JMFF006L19+ GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
JMFF038C09+ GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
JMFF048J09+ GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
JMSF028F01+ GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
                      ____________________________________________________________
consensus GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
 
. : . : . : . : . : . :
JMFF043I07+ TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
JMFS111H06+ TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
JMFS094E10+ TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
JMFF006L19+ TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
JMFF038C09+ TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
JMFF048J09+ TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
JMSF028F01+ TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
                      ____________________________________________________________
consensus TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
 
. : . : . : . : . : . :
JMFF043I07+ TGGACCGCTTCGCGCTTCAGCTCTGAGCTCTCGCCTCGCCTCTCGCCTCGCCAAGTAA
JMFS111H06+ TGGACCGCTTCGCGCTTCAGCTCTGAGCTCTCGCCTCG
JMFS094E10+ TGGACCGCTTCGCGCTTCAGCTCTGAGCTC
JMFF006L19+ TGGACCGCTTCGCGCTTCAGCTCTGAGCTCTCGCCTCGCCTCTCGCCTCGCCAAGTAA
JMFF038C09+ TGGACCGCTTCGCGCTTCAGCTCTGAGCTCTCGCCTCGCCTCTCGCCTCGCCAAGTAA
JMFF048J09+ TGGACCGCTTCGCGCTTCAGCTCTGAGCTCTCGCCTCGCCTCTCGCCTCGCCAAG
JMSF028F01+ TGGACCGCTTCGCGCTTCAGCTCTGAGCTCTCGCCTCGCCTCTCGCCTCGCCAAGTAACC
                      ____________________________________________________________
consensus TGGACCGCTTCGCGCTTCAGCTCTGAGCTCTCGCCTCGCCTCTCGCCTCGCCAAGTAACC