| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006L19 | Sequence | 566 | 000792 (7) | ref|XP_009589035.1| | 1e-12 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon | 772 | 009836 (7) | ref|XP_010023766.1| | 3e-116 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon |
| JMFF038C09 | Sequence | 565 | 000792 (7) | ref|XP_009589035.1| | 1e-12 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon | 308 | 009836 (7) | ref|XP_009589035.1| | 2e-22 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon |
| JMFF043I07 | Sequence | 654 | 000792 (7) | ref|XP_009589035.1| | 3e-32 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon | 494 | 009836 (7) | ref|XP_009589035.1| | 5e-39 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon |
| JMFF048J09 | Sequence | 430 | 000792 (7) | 564 | 009836 (7) | ref|XP_010326798.1| | 4e-15 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon | |||
| JMFS094E10 | Sequence | 626 | 000792 (7) | ref|XP_009589035.1| | 2e-25 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon | |||||
| JMFS111H06 | Sequence | 627 | 000792 (7) | ref|XP_009589035.1| | 1e-24 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon | |||||
| JMSF028F01 | Sequence | 668 | 000792 (7) | ref|XP_009589035.1| | 5e-31 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon | 737 | 009836 (7) | ref|XP_010023766.1| | 1e-115 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon |
This contig is upended
. : . : . : . : . : . :
JMSF028F01+ ACTGGCAA
____________________________________________________________
consensus ACTGGCAA
. : . : . : . : . : . :
JMFF043I07+ AAACCCATGCAAATGGGGCAAATGTATGTATTGGGGGGAGCCCCGTACG
JMFS111H06+ AAACCCATGCAAATGGGGCAAATGTATGTA-TTGGGGGAGCNCCGTACG
JMFS094E10+ AAACCCATGCAAATGGGGCAAATGTATGTA-TTGGGGGAGCCCCGTACG
JMSF028F01+ TGCCCCAGGCAAAACCCATGCAAATGGGGCAAATGTATGTATTTGGGGGAGCCCCGTACG
____________________________________________________________
consensus TGCCCCAGGCAAAACCCATGCAAATGGGGCAAATGTATGTATTTGGGGGAGCCCCGTACG
. : . : . : . : . : . :
JMFF043I07+ TATACGGGCAGCCACAAAAAGCCTTTGTAAGAGTTGAAAGCTGCACATGGGTTTCTATAC
JMFS111H06+ TATACGGGCAGCCACAAAAAGCCTTTGTAAGAGTTGAAAGCTGCACATGGGTTTCTATAC
JMFS094E10+ TATACGGGCAGCCACAAAAAGCCTTTGTAAGAGTTGAAAGCTGCACATGGGTTTCTATAC
JMFF006L19+ TTGAAAGCTGCACATGGGTTTCTATAC
JMFF038C09+ TGAAAGCTGCACATGGGTTTCTATAC
JMSF028F01+ TATACGGGCAGCCACAAAAAGCCTTTGTAAGAGTTGAAAGCTGCACATGGGTTTCTATAC
____________________________________________________________
consensus TATACGGGCAGCCACAAAAAGCCTTTGTAAGAGTTGAAAGCTGCACATGGGTTTCTATAC
. : . : . : . : . : . :
JMFF043I07+ CAATGATTGATTCATAATCTTTCAAAATGTTATCAAGTGGTTTTGATTGATTTTTTGGCA
JMFS111H06+ CAATGATTGATTCATAATCTTTCAAAATGTTATCAAGTGGTTTTGATTGATTTTTTGGCA
JMFS094E10+ CAATGATTGATTCATAATCTTTCAAAATGTTATCAAGTGGTTTTGATTGATTTTTTGGCA
JMFF006L19+ CAATGATTGATTCATAATCTTTCAAAATGTTATCAAGTGGTTTTGATTGATTTTTTGGCA
JMFF038C09+ CAATGATTGATTCATAATCTTTCAAAATGTTATCAAGTGGTTTTGATTGATTTTTTGGCA
JMSF028F01+ CAATGATTGATTCATAATCTTTCAAAATGTTATCAAGTGGTTTTGATTGATTTTTTGGCA
____________________________________________________________
consensus CAATGATTGATTCATAATCTTTCAAAATGTTATCAAGTGGTTTTGATTGATTTTTTGGCA
. : . : . : . : . : . :
JMFF043I07+ ACCCTTTCAACTTGGTCTGTTGCTTTTCTTGTGTTGTAGTATTGGTTTCTGTTCTTTCCA
JMFS111H06+ ACCCTTTCAACTTGGTCTGTTGCTTTTCTTGTGTTGTAGTATTGGTTTCTGTTCTTTCCA
JMFS094E10+ ACCCTTTCAACTTGGTCTGTTGCTTTTCTTGTGTTGTAGTATTGGTTTCTGTTCTTTCCA
JMFF006L19+ ACCCTTTCAACTTGGTCTGTTGCTTTTCTTGTGTTGTAGTATTGGTTTCTGTTCTTTCCA
JMFF038C09+ ACCCTTTCAACTTGGTCTGTTGCTTTTCTTGTGTTGTAGTATTGGTTTCTGTTCTTTCCA
JMFF048J09+ TGTTCTTTCCA
JMSF028F01+ ACCCTTTCAACTTGGTCTGTTGCTTTTCTTGTGTTGTAGTATTGGTTTCTGTTCTTTCCA
____________________________________________________________
consensus ACCCTTTCAACTTGGTCTGTTGCTTTTCTTGTGTTGTAGTATTGGTTTCTGTTCTTTCCA
. : . : . : . : . : . :
JMFF043I07+ AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
JMFS111H06+ AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
JMFS094E10+ AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
JMFF006L19+ AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
JMFF038C09+ AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
JMFF048J09+ AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
JMSF028F01+ AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
____________________________________________________________
consensus AAGTACAATACAAAGTGGCATGTTTTCTAGAAAAATATGGGAATTTGTATTGCCTAAGAG
. : . : . : . : . : . :
JMFF043I07+ GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
JMFS111H06+ GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
JMFS094E10+ GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
JMFF006L19+ GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
JMFF038C09+ GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
JMFF048J09+ GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
JMSF028F01+ GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
____________________________________________________________
consensus GATAGAATTGTATCCCCCTAAAGAGTGTTACAGACATGTTATAGATCCTTCACTCTAACT
. : . : . : . : . : . :
JMFF043I07+ TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
JMFS111H06+ TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
JMFS094E10+ TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
JMFF006L19+ TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
JMFF038C09+ TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
JMFF048J09+ TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
JMSF028F01+ TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
____________________________________________________________
consensus TCAAAATCAAGAACAATGAGAATTGCGCCTGGCAGTGGAGTCGTCCCAACACGGCAGTGG
. : . : . : . : . : . :
JMFF043I07+ AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
JMFS111H06+ AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
JMFS094E10+ AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
JMFF006L19+ AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
JMFF038C09+ AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
JMFF048J09+ AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
JMSF028F01+ AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
____________________________________________________________
consensus AGTCGTCCGGTGGTGGCGTCGGTGCCTCGGTGGTGGCTTCAGAACTCGGAAGTAAAACCT
. : . : . : . : . : . :
JMFF043I07+ GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
JMFS111H06+ GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
JMFS094E10+ GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
JMFF006L19+ GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
JMFF038C09+ GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
JMFF048J09+ GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
JMSF028F01+ GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
____________________________________________________________
consensus GCTGCGCTGGTGGTGGCTTCGGAACTTGCGGTGGCCGGTGGCCGGTGGCCGGTGGGCCGG
. : . : . : . : . : . :
JMFF043I07+ TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
JMFS111H06+ TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
JMFS094E10+ TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
JMFF006L19+ TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
JMFF038C09+ TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
JMFF048J09+ TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
JMSF028F01+ TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
____________________________________________________________
consensus TGTGGCGTCGGAGGAGAAGACGGAATCGACGGAGAAGACGGAATCGCCGGTGGTGGACCG
. : . : . : . : . : . :
JMFF043I07+ TGGACCGCTTCGCGCTTCAGCTCTGAGCTCTCGCCTCGCCTCTCGCCTCGCCAAGTAA
JMFS111H06+ TGGACCGCTTCGCGCTTCAGCTCTGAGCTCTCGCCTCG
JMFS094E10+ TGGACCGCTTCGCGCTTCAGCTCTGAGCTC
JMFF006L19+ TGGACCGCTTCGCGCTTCAGCTCTGAGCTCTCGCCTCGCCTCTCGCCTCGCCAAGTAA
JMFF038C09+ TGGACCGCTTCGCGCTTCAGCTCTGAGCTCTCGCCTCGCCTCTCGCCTCGCCAAGTAA
JMFF048J09+ TGGACCGCTTCGCGCTTCAGCTCTGAGCTCTCGCCTCGCCTCTCGCCTCGCCAAG
JMSF028F01+ TGGACCGCTTCGCGCTTCAGCTCTGAGCTCTCGCCTCGCCTCTCGCCTCGCCAAGTAACC
____________________________________________________________
consensus TGGACCGCTTCGCGCTTCAGCTCTGAGCTCTCGCCTCGCCTCTCGCCTCGCCAAGTAACC