Contig 000788:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044C09Sequence633000788 (6)gb|AFK35835.1|7e-120unknown [Lotus japonicus]
JMFS163G04Sequence601000788 (6)gb|AFK35835.1|4e-119unknown [Lotus japonicus]
JMSF018H19Sequence238000788 (6)ref|XP_011089536.1|2e-45PREDICTED: heat shock cognate protein 80 [Sesamum indicum]749012648 (4)gb|KHG21667.1|5e-86Heat shock cognate 80 [Gossypium arboreum]
JMSF024A15Sequence647000788 (6)ref|XP_009785111.1|2e-123PREDICTED: heat shock cognate protein 80 [Nicotiana sylvestris]745012648 (4)gb|KHG21667.1|8e-100Heat shock cognate 80 [Gossypium arboreum]
JMSF027L08Sequence653000788 (6)ref|XP_009591410.1|2e-126PREDICTED: heat shock cognate protein 80 [Nicotiana tomentosiformis] dbj|BAE9740755012648 (4)gb|KHG21667.1|3e-100Heat shock cognate 80 [Gossypium arboreum]
JMSF036P13Sequence616000788 (6)gb|AFK35835.1|6e-118unknown [Lotus japonicus]711012648 (4)gb|KHG21667.1|1e-81Heat shock cognate 80 [Gossypium arboreum]

Alignment

This contig is upended


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JMSF018H19+                                                                 AGGGTA
JMSF036P13+                                                     TCCTTGAGGAAAAGGGTA
JMFF044C09+                                   AGATATTCAAGCTGGTCTTCCTGAGGANAAAGGGTA
JMFS163G04+                         GCGCTCCTCAAGATATTCAAGCTGGTCTTCC-TGAGGAAAAGGGTA
JMSF024A15+                     GCCGGCGCTCCTCAAGATATTCAAGCTGGTCTTCCTTGAGGAAAAGGGTA
JMSF027L08+                                                                 AGGGTA
                      ____________________________________________________________
consensus                       GCCGGCGCTCCTCAAGATATTCAAGCTGGTCTTCCTTGAGGAAAAGGGTA
 
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JMSF018H19+           ATTTTTGTTCCCCTGCCCAGATTCTCACCAGAAGTATCTCTGGTAACAGTGAATGAACCA
JMSF036P13+           ATTTTTGTTCCCCTGCCCAGATTCTCACCAGAAGTATCTCTGGTAACAGTGAATGAACCA
JMFF044C09+           ATTNTTGTTCCCCTGCCCAGATTCTCACCAGAAGTATCTCTGGTAACAGTGAATGAACCA
JMFS163G04+           ATTTTTGTTCCCCTGCCCAGATTCTCACCAGAAGTATCTCTGGTAACAGTGAATGAACCA
JMSF024A15+           ATTTTTGTTCCCCTGCCCAGATTCTCACCAGAAGTATCTCTGGTAACAGTGAATGAACCA
JMSF027L08+           ATTTTTGTTCCCCTGCCCAGATTCTCACCAGAAGTATCTCTGGTAACAGTGAATGAACCA
                      ____________________________________________________________
consensus             ATTTTTGTTCCCCTGCCCAGATTCTCACCAGAAGTATCTCTGGTAACAGTGAATGAACCA
 
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JMSF018H19+           CCAGCTTGGGACTCCCAGACATACTGTTCATCATCATTGTGCTTTGTTGTTACAATGACC
JMSF036P13+           CCAGCTTGGGACTCCCAGACATACTGTTCATCATCATTGTGCTTTGTTGTTACAATGACC
JMFF044C09+           CCAGCTTGGGACTCCCAGACATACTGTTCATCATCATTGTGCTTTGTTGTTACAATGACC
JMFS163G04+           CCAGCTTGGGACTCCCAGACATACTGTTCATCATCATTGTGCTTTGTTGTTACAATGACC
JMSF024A15+           CCAGCTTGGGACTCCCAGACATACTGTTCATCATCATTGTGCTTTGTTGTTACAATGACC
JMSF027L08+           CCAGCTTGGGACTCCCAGACATACTGTTCATCATCATTGTGCTTTGTTGTTACAATGACC
                      ____________________________________________________________
consensus             CCAGCTTGGGACTCCCAGACATACTGTTCATCATCATTGTGCTTTGTTGTTACAATGACC
 
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JMSF018H19+           TTCTCAGCAACCAAGTAAGCTGAGTAGAACCCAACTCCAAACTGTCCAATCATGCTAACA
JMSF036P13+           TTCTCAGCAACCAAGTAAGCTGAGTAGAACCCAACTCCAAACTGTCCAATCATGCTAACA
JMFF044C09+           TTCTCAGCAACCAAGTAAGCTGAGTAGAACCCAACTCCAAACTGTCCAATCATGCTAACA
JMFS163G04+           TTCTCAGCAACCAAGTAAGCTGAGTAGAACCCAACTCCAAACTGTCCAATCATGCTAACA
JMSF024A15+           TTCTCAGCAACCAAGTAAGCTGAGTAGAACCCAACTCCAAACTGTCCAATCATGCTAACA
JMSF027L08+           TTCTCAGCAACCAAGTAAGCTGAGTAGAACCCAACTCCAAACTGTCCAATCATGCTAACA
                      ____________________________________________________________
consensus             TTCTCAGCAACCAAGTAAGCTGAGTAGAACCCAACTCCAAACTGTCCAATCATGCTAACA
 
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JMSF018H19+           TCA                                                         
JMSF036P13+           TCAGCACCAGCCGTAAGAGCTTCCATGAATTCTTTGGTCCCAGACCTTGCAATTGTACCA
JMFF044C09+           TCAGCACCAGCCGTAAGAGCTTCCATGAATTCTTTGGTCCCAGACCTTGCAATTGTACCA
JMFS163G04+           TCAGCACCAGCCGTAAGAGCTTCCATGAATTCTTTGGTCCCAGACCTTGCAATTGTACCA
JMSF024A15+           TCAGCACCAGCCGTAAGAGCTTCCATGAATTCTTTGGTCCCAGACCTTGCAATTGTACCA
JMSF027L08+           TCAGCACCAGCCGTAAGAGCTTCCATGAATTCTTTGGTCCCAGACCTTGCAATTGTACCA
                      ____________________________________________________________
consensus             TCAGCACCAGCCGTAAGAGCTTCCATGAATTCTTTGGTCCCAGACCTTGCAATTGTACCA
 
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JMSF036P13+           AGATTGTTCACCAGGTCAGCCTTTGTCATACCAACACCACTGTCAATAATGGACAGTGAA
JMFF044C09+           AGATTGTTCACCAGGTCAGCCTTTGTCATACCAACACCACTGTCAATAATGGACAGTGAA
JMFS163G04+           AGATTGTTCACCAGGTCAGCCTTTGTCATACCAACACCACTGTCAATAATGGACAGTGAA
JMSF024A15+           AGATTGTTCACCAGGTCAGCCTTTGTCATACCAACACCACTGTC---AATGGACAGTGAA
JMSF027L08+           AGATTGTTCACCAGGTCAGCCTTTGTCATACCAACACCACTGTCAATAATGGACAGTGAA
                      ____________________________________________________________
consensus             AGATTGTTCACCAGGTCAGCCTTTGTCATACCAACACCACTGTCAATAATGGACAGTGAA
 
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JMSF036P13+           TTGTTGGTTTTGTCAGGGACAATGTGGATGAAGAGCTCAGGTTGAGCATCTAATTTGCTC
JMFF044C09+           TTGTTGGTTTTGTCAGGGACAATGTGGATGAAGAGCTCAGGTTGAGCATCTAATTTGCTC
JMFS163G04+           TTGTTGGTTTTGTCAGGGACAATGTGGATGAAGAGCTCAGGTTGAGCATCTAATTTGCTC
JMSF024A15+           TTGTTGGTTTTGTCAGGGACAATGTGGATGAAGAGCTCAGGTTGAGCATCTAATTTGCTC
JMSF027L08+           TTGTTGGTTTTGTCAGGGACAATGTGGATGAAGAGCTCAGGTTGAGCATCTAATTTGCTC
                      ____________________________________________________________
consensus             TTGTTGGTTTTGTCAGGGACAATGTGGATGAAGAGCTCAGGTTGAGCATCTAATTTGCTC
 
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JMSF036P13+           TTGTCGGTCAAACTTTCAAAACGGATCTTGTCCAGAGCATCAGATGAATTACTGATGAGC
JMFF044C09+           TTGTCGGTCAAACTTTCAAAACGGATCTTGTCCAGAGCATCAGATGAATTACTGATGAGC
JMFS163G04+           TTGTCGGTCAAACTTTCAAAACGGATCTTGTCCAGAGCATCAGATGAATTACTGATGAGC
JMSF024A15+           TTGTCGGTCAAACTTTCAAAACGGATCTTGTCCAGAGCATCAGATGAATTACTGATGAGC
JMSF027L08+           TTGTCGGTCAAACTTTCAAAACGGATCTTGTCCAGAGCATCAGATGAATTACTGATGAGC
                      ____________________________________________________________
consensus             TTGTCGGTCAAACTTTCAAAACGGATCTTGTCCAGAGCATCAGATGAATTACTGATGAGC
 
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JMSF036P13+           TCGCGAAGAAAGATCTCCTTGTTGCTATAAAAAGTGTTGATGATGAGACTTAGGAGCTGG
JMFF044C09+           TCGCGAAGAAAGATCTCCTTGTTGCTATAAAAAGTGTTGATGATGAGACTTAGGAGCTGG
JMFS163G04+           TCGCGAAGAAAGATCTCCTTGTTGCTATAAAAAGTGTTGATGATGAGACTTAGGAGCTGG
JMSF024A15+           TCGCGAAGAAAGATCTCCTTGTTGCTATAAAAAGTGTTGATGATGAGACTTAGGAGCTGG
JMSF027L08+           TCGCGAAGAAAGATCTCCTTGTTGCTATAAAAAGTGTTGATGATGAGACTTAGGAGCTGG
                      ____________________________________________________________
consensus             TCGCGAAGAAAGATCTCCTTGTTGCTATAAAAAGTGTTGATGATGAGACTTAGGAGCTGG
 
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JMSF036P13+           TTAATCTCAGCCTGAAAAGCAAACGTCTCTGCATCCGCCATGGCCTCCGATCTCCGACTT
JMFF044C09+           TTAATCTCAGCCTGAAAAGCAAACGTCTCTGCATCCGCCATGGCCTCCGATCTCCGACTT
JMFS163G04+           TTAATCTCAGCCTGAAAAGCAAACGTCTCTGCATCCGCCATGGCCTCCGATCTCCGACTT
JMSF024A15+           TTAATCTCAGCCTGAAAAGCAAACGTCTCTGCATCCGCCATGGCCTCCGATCTCCGACTT
JMSF027L08+           TTAATCTCAGCCTGAAAAGCAAACGTCTCTGCATCCGCCATGGCCTCCGATCTCCGACTT
                      ____________________________________________________________
consensus             TTAATCTCAGCCTGAAAAGCAAACGTCTCTGCATCCGCCATGGCCTCCGATCTCCGACTT
 
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JMSF036P13+           CGTAGAGAGATTACAGATTATAGATCTCTAATTAACAGTGAGAGCACAGATATTGGT   
JMFF044C09+           CGTAGAGAGATTACAGATTATAGATCTCTAATTAACAGTGAGAGCACAGATATTGGT   
JMFS163G04+           CGTAGAGAGATTACAG                                            
JMSF024A15+           CGTAGAGAGATTACAGATTATAGATCTCTAATTAACAGTGAGAGCACAGATATTGGT   
JMSF027L08+           CGTAGAGAGATTACAGATTATAGATCTCTAATTAACAGTGAGAGCACAGATATTGGTACC
                      ____________________________________________________________
consensus             CGTAGAGAGATTACAGATTATAGATCTCTAATTAACAGTGAGAGCACAGATATTGGTACC