Contig 000783:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027E24Sequence528000783 (4)ref|XP_009802815.1|1e-58PREDICTED: F-box/kelch-repeat protein At1g15670-like [Nicotiana sylvestris]174004280 (3)
JMSF027P06Sequence659000783 (4)ref|XP_009802815.1|8e-92PREDICTED: F-box/kelch-repeat protein At1g15670-like [Nicotiana sylvestris]176004280 (3)
JMSF033M12Sequence658000783 (4)ref|XP_009802815.1|1e-90PREDICTED: F-box/kelch-repeat protein At1g15670-like [Nicotiana sylvestris]184017203
JMSF043C01Sequence396000783 (4)ref|XP_009802815.1|7e-28PREDICTED: F-box/kelch-repeat protein At1g15670-like [Nicotiana sylvestris]349004280 (3)

Alignment

This contig is upended


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JMSF033M12+            CCGCCGGATATCGAACACCCACGCCGAGCTCAGGGCGTTCTTGCTCTCGTCGTGGCCGC
JMSF027P06+           TCCGCCGGATATCGAACACCCACGCCGAGCTCAGGGCGTTCTTGCTCTCGTCGTGGCCGC
                      ____________________________________________________________
consensus             TCCGCCGGATATCGAACACCCACGCCGAGCTCAGGGCGTTCTTGCTCTCGTCGTGGCCGC
 
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JMSF033M12+           CGGCGACGAACACCCTCCCTTCCGCCGCCCCCACGGCGAAGAAGGAGCGCTTGGAGGGCA
JMSF027P06+           CGGCGACGAACACCCTCCCTTCCGCCGCCCCCACGGCGAAGAAGGAGCGCTTGGAGGGCA
                      ____________________________________________________________
consensus             CGGCGACGAACACCCTCCCTTCCGCCGCCCCCACGGCGAAGAAGGAGCGCTTGGAGGGCA
 
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JMSF033M12+           TGTCCCGGCACTGAGTCCACCCGCGAGTGGCGAAGTCGTACACAAAAATATCCTTCACTG
JMSF027P06+           TGTCCCGGCACTGAGTCCACCCGCGAGTGGCGAAGTCGTACACAAAAATATCCTTCACTG
JMSF027E24+                      TGAGTCCNCCCGCGAGTGGCGAAGTNGTACACAAAAATATCNTTCACTG
                      ____________________________________________________________
consensus             TGTCCCGGCACTGAGTCCACCCGCGAGTGGCGAAGTCGTACACAAAAATATCCTTCACTG
 
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JMSF033M12+           GGTCCCAATTCGCCGGGTCCCACCCGCCCATCACCACCAGCTTCCCTTCCGTGCTCACAA
JMSF043C01+                                                            CGTGCTCACAA
JMSF027P06+           GGTCCCAATTCGCCGGGTCCCACCCGCCCATCACCACCAGCTTCCCTTCCGTGCTCACAA
JMSF027E24+           GGTCCCAATTCGCCGGGTCCCANCCGCCCATCACCACCAGCTTCCCTTCCGTGCTCACAA
                      ____________________________________________________________
consensus             GGTCCCAATTCGCCGGGTCCCACCCGCCCATCACCACCAGCTTCCCTTCCGTGCTCACAA
 
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JMSF033M12+           TTAGGCAAAACATCGGCAACCCATTCCGGTACTTGGGAATCGGGTCGATCCAGGCCCAAG
JMSF043C01+           TTTGGCAAANCATCGGCAACCCATTCCGGTACTTGGGAATCGGGTCGATCCAGGCCCAAG
JMSF027P06+           TTTGGCAAAACATCGGCAACCCATTCCGGTACTTGGGAATCGGGTCGATCCAGGCCCAAG
JMSF027E24+           TTTGGCAAAACATCGGCAACCCATTCCGGTACTTGGGAATCGGGTCGATCCAGGCCCAAG
                      ____________________________________________________________
consensus             TTTGGCAAAACATCGGCAACCCATTCCGGTACTTGGGAATCGGGTCGATCCAGGCCCAAG
 
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JMSF033M12+           CCCCGCTCACCGGGTCGAACATTGAAACGCCGTAACT-CGGTTGCCCCACCGGTTTGGAA
JMSF043C01+           CCCCGCTCACCGGGTCGAACATTGAAACGCCGTAACTACGGTTGCCCCACCGGTTTGGAA
JMSF027P06+           CCCCGCTCACCGGGTCGAACATTGAAACGCCGTAACT-CGGTTGCCCCACCGGTTTGGAA
JMSF027E24+           CCCCGCTCACCGGGTCGAACATTGAAACGCNGTAACT-CGGTTGCCCCACCGGTTTGGAA
                      ____________________________________________________________
consensus             CCCCGCTCACCGGGTCGAACATTGAAACGCCGTAACT-CGGTTGCCCCACCGGTTTGGAA
 
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JMSF033M12+           TCGGACGGCACCGGCCGCGCCTGAACAAGGCAAGCGGCCTTGTGGGTATGCCCCGTTTTC
JMSF043C01+           TCGGACGGCACCGGCCGCGCCTGAACAAGGCAAGCGGCCTTGTGGGTATGCCCCGTTTTC
JMSF027P06+           TCGGACGGCACCGGCCGCGCCTGAACAAGGCAAGCGGCCTTGTGGGTATGCCCCGTTTTC
JMSF027E24+           TCGGACGGCACCGGCCGCGCCTGAACAAGGCAAGCGGCCTTGTGGGTATGCCCCGTTTTC
                      ____________________________________________________________
consensus             TCGGACGGCACCGGCCGCGCCTGAACAAGGCAAGCGGCCTTGTGGGTATGCCCCGTTTTC
 
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JMSF033M12+           TTCCGGTGATAGTAAAAGTCCCGGCTGAGAAGAAGCTCGCGCCACCGCCGGCACACGAGC
JMSF043C01+           TTCCGGTGATAGTAAAAGTCCCGGCTGAGAAGAAGCTCGCGCCACCGCCGGCACACGAGC
JMSF027P06+           TTCCGGTGATAGTAAAAGTCCCGGCTGAGAAGAAGCTCGCGCCACCGCCGGCACACGAGC
JMSF027E24+           TTCCGGTGATAGTAAAAGTCCCGGNTGAGAAGAAGCTCGCGCCACCGCCGGCACACGAGC
                      ____________________________________________________________
consensus             TTCCGGTGATAGTAAAAGTCCCGGCTGAGAAGAAGCTCGCGCCACCGCCGGCACACGAGC
 
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JMSF033M12+           GAAGCCACCGAGTGAGCTGAGTAGTGCAACCGAGTCAAACATTCGAGAGCGAGTTCCTCG
JMSF043C01+           GAAGCCACCGAGTGAGCTGAGTAGTGCAACCGAGTCAAACATTCGAGAGCGAGTTCCTCG
JMSF027P06+           GAAGCCACCGAGTGAGCTGAGTAGTGCAACCGAGTCAAACATTCGAGAGCGAGTTCCTCG
JMSF027E24+           GAAGCCACCGAGTGAGCTGAGTAGTGCAACCGAGTCAAACATTCGAGAGCGAGTTCCTCG
                      ____________________________________________________________
consensus             GAAGCCACCGAGTGAGCTGAGTAGTGCAACCGAGTCAAACATTCGAGAGCGAGTTCCTCG
 
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JMSF033M12+           GGCAAACCCGGAAGTAACTCCGCGAGTTGTACTGAGTCCATGACTCGTTAATTATTCTCC
JMSF043C01+           GGCAAACCCGGAAGTAACTCCGCGAGTTGTACTGAGTCCATGACTCGTTAATTATTCTCC
JMSF027P06+           GGCAAACCCGGAAGTAACTCCGCGAGTTGTACTGAGTCCATGACTCGTTAATTATTCTCC
JMSF027E24+           GGCAAACCCGGAAGTAACTCCGCGAGTTGTACTGAGTCCATGACTCGTTAATTATTCTCC
                      ____________________________________________________________
consensus             GGCAAACCCGGAAGTAACTCCGCGAGTTGTACTGAGTCCATGACTCGTTAATTATTCTCC
 
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JMSF033M12+           AGAAGCTTATCTCTTAGAAGATAAATGTAAGAAGAAGGGAATTATGAAAAAAGTGATG  
JMSF043C01+           AGAAGCTTATCTCTTAGAAGATAAA                                   
JMSF027P06+           AGAAGCTTATCTCTTAGAAGATAAATGTAAGAAGAAGGGAATTATGAAAAAAGTGATG  
JMSF027E24+           AGAAGCTTATCTCTTAGAAGATAAATGTAAGAAGAAGGGAATTATGAAAAAAGTGATGCC
                      ____________________________________________________________
consensus             AGAAGCTTATCTCTTAGAAGATAAATGTAAGAAGAAGGGAATTATGAAAAAAGTGATGCC