Contig 000770:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026A15Sequence444000770 (4)emb|CDP06557.1|3e-12unnamed protein product [Coffea canephora]392000770 (4)emb|CDP06557.1|2e-12unnamed protein product [Coffea canephora]
JMSF026C14Sequence444000770 (4)emb|CDP06557.1|3e-12unnamed protein product [Coffea canephora]394000770 (4)emb|CDP06557.1|2e-12unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF026C14-                                               GGGGAGAAATTAATTAATTAATTA
rJMSF026A15+                                              GGGGAGAAATTAATTAATTAATTA
rJMSF026C14+                                              GGGGAGAAATTAATTAATTAATTA
JMSF026A15-                                               GGGGAGAAATTAATTAATTAATTA
                      ____________________________________________________________
consensus                                                 GGGGAGAAATTAATTAATTAATTA
 
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JMSF026C14-           AGCAGAAGAGAAGAGGCATGGCTTCCTCTTCCTCTCCCTCTTCCTCTAGGCTCTATCTTC
rJMSF026A15+          AGCAGAAGAGAAGAGGCATGGCTTCCTCTTCCTCTCCCTCTTCCTCTAGGCTCTATCTTC
rJMSF026C14+          AGCAGAAGAGAAGAGGCATGGCTTCCTCTTCCTCTCCCTCTTCCTCTAGGCTCTATCTTC
JMSF026A15-           AGCAGAAGAGAAGAGGCATGGCTTCCTCTTCCTCTCCCTCTTCCTCTAGGCTCTATCTTC
                      ____________________________________________________________
consensus             AGCAGAAGAGAAGAGGCATGGCTTCCTCTTCCTCTCCCTCTTCCTCTAGGCTCTATCTTC
 
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JMSF026C14-           TAATTCTTCTGCTTATGCTTATCCACCTCTCCTTCCATCATTCAAGCTTCGCGTATGCCA
rJMSF026A15+          TAATTCTTCTGCTTATGCTTATCCACCTCTCCTTCCATCATTCAAGCTTCGCGTATGCCA
rJMSF026C14+          TAATTCTTCTGCTTATGCTTATCCACCTCTCCTTCCATCATTCAAGCTTCGCGTATGCCA
JMSF026A15-           TAATTCTTCTGCTTATGCTTATCCACCTCTCCTTCCATCATTCAAGCTTCGCGTATGCCA
                      ____________________________________________________________
consensus             TAATTCTTCTGCTTATGCTTATCCACCTCTCCTTCCATCATTCAAGCTTCGCGTATGCCA
 
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JMSF026C14-           GACCACTTTCTGTTTTCATGCCCCAGCAAACCGGCTTTGCCACGTCGATTTTAGCAACTC
rJMSF026A15+          GACCACTTTCTGTTTTCATGCCCCAGCAAACCGGCTTTGCCACGTCGATTTTAGCAACTC
rJMSF026C14+          GACCACTTTCTGTTTTCATGCCCCAGCAAACCGGCTTTGCCACGTCGATTTTAGCAACTC
JMSF026A15-           GACCACTTTCTGTTTTCATGCCCCAGCAAACCGGCTTTGCCACGTCGATTTTAGCAACTC
                      ____________________________________________________________
consensus             GACCACTTTCTGTTTTCATGCCCCAGCAAACCGGCTTTGCCACGTCGATTTTAGCAACTC
 
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JMSF026C14-           TTGGAGTGGTTTGCAAGTGCTGCGACGGCGTTGCCTCCGCCGGAGAAGAAGGGTGTGTGA
rJMSF026A15+          TTGGAGTGGTTTGCAAGTGCTGCGACGGCGTTGCCTCCGCCGGAGAAGAAGGGTGTGTGA
rJMSF026C14+          TTGGAGTGGTTTGCAAGTGCTGCGACGGCGTTGCCTCCGCCGGAGAAGAAGGGTGTGTGA
JMSF026A15-           TTGGAGTGGTTTGCAAGTGCTGCGACGGCGTTGCCTCCGCCGGAGAAGAAGGGTGTGTGA
                      ____________________________________________________________
consensus             TTGGAGTGGTTTGCAAGTGCTGCGACGGCGTTGCCTCCGCCGGAGAAGAAGGGTGTGTGA
 
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JMSF026C14-           CTCTATGGTCTGGTTCCTGCTCAAAGCTTCAATGCCTTCCATGGAAGCTACACTAGTATT
rJMSF026A15+          CTCTATGGTCTGGTTCCTGCTCAAAGCTTCAATGCCTTCCATGGAAGCTACACTAGTATT
rJMSF026C14+          CTCTATGGTCTGGTTCCTGCTCAAAGCTTCAATGCCTTCCATGGAAGCTACACTAGTATT
JMSF026A15-           CTCTATGGTCTGGTTCCTGCTCAAAGCTTCAATGCCTTCCATGGAAGCTACACTAGTATT
                      ____________________________________________________________
consensus             CTCTATGGTCTGGTTCCTGCTCAAAGCTTCAATGCCTTCCATGGAAGCTACACTAGTATT
 
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JMSF026C14-           TTTAGTATATATTATTTGTTTCTAATTTTATCCTTTTGTCGGTGTGTACCAGTTAATTAT
rJMSF026A15+          TTTAGTATATATTATTTGTTTCTAATTTTATCCTTTTGTCGGTGTGTACCAGTTAATTAT
rJMSF026C14+          TTTAGTATATATTATTTGTTTCTAATTTTATCCTTTTGTCGGTGTGTACCAGTTAATTAT
JMSF026A15-           TTTAGTATATATTATTTGTTTCTAATTTTATCCTTTTGTCGGTGTGTACCAGTTAATTAT
                      ____________________________________________________________
consensus             TTTAGTATATATTATTTGTTTCTAATTTTATCCTTTTGTCGGTGTGTACCAGTTAATTAT
 
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JMSF026C14-           CGAAATGATTTTTCAACCATAGTTATTTATTATTTTAAATTTTTACTTTTAAAAAAAAAA
rJMSF026A15+          CGAAATGA                                                    
rJMSF026C14+          CGAAATGA                                                    
JMSF026A15-           CGAAATGATTTTTCAACCATAGTTATTTATTATTTTAAATTTTTACTTTTAAAAAAAAAA
                      ____________________________________________________________
consensus             CGAAATGATTTTTCAACCATAGTTATTTATTATTTTAAATTTTTACTTTTAAAAAAAAAA