Contig 000768:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020F18Sequence655000768 (3)ref|XP_009798272.1|8e-45PREDICTED: probable xyloglucan glycosyltransferase 6 [Nicotiana sylvestris]753002866 (3)ref|XP_003635418.1|9e-20PREDICTED: probable xyloglucan glycosyltransferase 6 [Vitis vinifera]
JMSF025N03Sequence662000768 (3)ref|XP_009798272.1|9e-45PREDICTED: probable xyloglucan glycosyltransferase 6 [Nicotiana sylvestris]748002866 (3)gb|AFK48550.1|1e-18unknown [Lotus japonicus]
JMSF050M19Sequence655000768 (3)ref|XP_009798272.1|1e-48PREDICTED: probable xyloglucan glycosyltransferase 6 [Nicotiana sylvestris]718002866 (3)ref|XP_003635418.1|1e-23PREDICTED: probable xyloglucan glycosyltransferase 6 [Vitis vinifera]

Alignment

This contig is upended


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JMSF050M19+                                                GCGCCAAATAGTTGGCCCTAATC
JMSF020F18+                                                                     TC
JMSF025N03+                                                                     TC
                      ____________________________________________________________
consensus                                                  GCGCCAAATAGTTGGCCCTAATC
 
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JMSF050M19+           TCCAGCCAGTGAGCGTAGACGTACTCCACCAAGTCCACAACNTCGGCCGACGCGGATTCC
JMSF020F18+           TCCAGCCAGTGAGCGTAGACGTACTCCACCAAGTCCACAACCTCGGCCGACGCGGATTCC
JMSF025N03+           TCCAGCCAGTGAGCGTAGACGTACTCCACCAAGTCCACAACCTCGGCCGACGCGGATTCC
                      ____________________________________________________________
consensus             TCCAGCCAGTGAGCGTAGACGTACTCCACCAAGTCCACAACCTCGGCCGACGCGGATTCC
 
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JMSF050M19+           ACCGTAGGCGGACTAAAATGCCATCCTTTGAAGTAAGCAATTAGCTCGAAGAGTAGCAGA
JMSF020F18+           ACCGTAGGCGGACTAAAATGCCATCCTTTGAAGTAAGCAATTAGCTCGAAGAGTAGCAGA
JMSF025N03+           ACCGTAGGCGGACTAAAATGCCATCCTTTGAAGTAAGCAATTAGCTCGAAGAGTAGCAGA
                      ____________________________________________________________
consensus             ACCGTAGGCGGACTAAAATGCCATCCTTTGAAGTAAGCAATTAGCTCGAAGAGTAGCAGA
 
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JMSF050M19+           AGCACGGAGACCGTCAAAAACACCTTAATTACCCGATACAACCGGGACTCCGCTCTCGGC
JMSF020F18+           AGCACGGAGACCGTCAAAAACACCTTAATTACCCGATACAACCGGGACTCCGCTCTCGGC
JMSF025N03+           AGCACGGAGACCGTCAAAAACACCTTAATTACCCGATACAACCGGGACTCCGCTCTCGGC
                      ____________________________________________________________
consensus             AGCACGGAGACCGTCAAAAACACCTTAATTACCCGATACAACCGGGACTCCGCTCTCGGC
 
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JMSF050M19+           GCGGCGGAACTGGAGGCCGCGATACGGCGATTGGCGGTGCGGACGATAGAGATGAAGCTA
JMSF020F18+           GCGGCGGAACTGGAGGCCGCGATACGGCGATTGGCGGTGCGGACGATAGAGATGAAGCTA
JMSF025N03+           GCGGCGGAACTGGAGGCCGCGATACGGCGATTGGCGGTGCGGACGATAGAGATGAAGCTA
                      ____________________________________________________________
consensus             GCGGCGGAACTGGAGGCCGCGATACGGCGATTGGCGGTGCGGACGATAGAGATGAAGCTA
 
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JMSF050M19+           TTGGTGATGAACGCGACTGAGCCGGCGATTTGCTGGATTTTAATGAGGTAAATCCAGGAC
JMSF020F18+           TTGGTGATGAACGCGACTGAGCCGGCGATTTGCTGGATTTTAATGAGGTAAATCCAGGAC
JMSF025N03+           TTGGTGATGAACGCGACTGAGCCGGCGATTTGCTGGATTTTAATGAGGTAAATCCAGGAC
                      ____________________________________________________________
consensus             TTGGTGATGAACGCGACTGAGCCGGCGATTTGCTGGATTTTAATGAGGTAAATCCAGGAC
 
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JMSF050M19+           AGCTGCCGAGCGCTGCGAGTCCGTTCCTTGTCCAATGCGCCATCGCCGCTAGGGCTGCGG
JMSF020F18+           AGCTGCCGAGCGCTGCGAGTCCGTTCCTTGTCCAATGCGCCATCGCCGCTAGGGCTGCGG
JMSF025N03+           AGCTGCCGAGCGCTGCGAGTCCGTTCCTTGTCCAATGCGCCATCGCCGCTAGGGCTGCGG
                      ____________________________________________________________
consensus             AGCTGCCGAGCGCTGCGAGTCCGTTCCTTGTCCAATGCGCCATCGCCGCTAGGGCTGCGG
 
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JMSF050M19+           ATCTCCACATTCAAAAAGCTATGCGATTCCGCGGAGGACGGCGAAGCGCCGGAAGACGAG
JMSF020F18+           ATCTCCACATTTAAAAAGCTATGCGATTCCGCGGAGGACGGCGAAGCGCCGGAAGACGAG
JMSF025N03+           ATCTCCACATTCAAAAAGCTATGCGATTCCGCGGAGGACGGCGAAGCGCCGGAAGACGAG
                      ____________________________________________________________
consensus             ATCTCCACATTCAAAAAGCTATGCGATTCCGCGGAGGACGGCGAAGCGCCGGAAGACGAG
 
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JMSF050M19+           CCGGAAGAGAAGACGCCATTGTCCTCCTCCACCCTCTGCTTATTCCACCACTCTTGAAAC
JMSF020F18+           CCGGAAGAGAAGACGCCATTGTCCTCCTCCACCCTCTGCTTATTCCACCACTCTTGAAAC
JMSF025N03+           CCGGAAGAGAAGACGCCATTGTCCTCCTCCACCCTCTGCTTATTCCACCACTCTTGAAAC
                      ____________________________________________________________
consensus             CCGGAAGAGAAGACGCCATTGTCCTCCTCCACCCTCTGCTTATTCCACCACTCTTGAAAC
 
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JMSF050M19+           TCATAGTTTGGCTGCCGAGACATATATAGAACACAAACAACAATCCAACAATTATATGAT
JMSF020F18+           TCATAGTTTGGCTGCCGAGACATATATAGAACACAAACAACAATCCAACAATTATATGAT
JMSF025N03+           TCATAGTTTGGCTGCCGAGACATATATAGAACACAAACAACAATCCAACAATTATATGAT
                      ____________________________________________________________
consensus             TCATAGTTTGGCTGCCGAGACATATATAGAACACAAACAACAATCCAACAATTATATGAT
 
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JMSF050M19+           TATGCGCCCCTCGAGATTTCGCCTTTCCAGATCCGGATTCTGGTCTATCGGCGACGGTGA
JMSF020F18+           TATGCGCCCCTCGAGATTTCGCCTTTCCAGATCCGGATTCTGGTCTATCGGCGACGGTGA
JMSF025N03+           TATGCGCCCCTCGAGATTTCGCCTTTCCAGATCCGGATTCTGGTCTATCGGCGACGGTGA
                      ____________________________________________________________
consensus             TATGCGCCCCTCGAGATTTCGCCTTTCCAGATCCGGATTCTGGTCTATCGGCGACGGTGA
 
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JMSF050M19+           ATCATGGCCGCGCGTGCGTGCGTGATCCGGT                             
JMSF020F18+           ATCATGGCCGCGCGTGCGTGCGTGATCCGGTGACTGGGGACGGATTATTAC         
JMSF025N03+           ATCATGGCCGCGCGTGCGTGCGTGATCCGGTGACTGGGGACGGATTATTACAAAAAACCC
                      ____________________________________________________________
consensus             ATCATGGCCGCGCGTGCGTGCGTGATCCGGTGACTGGGGACGGATTATTACAAAAAACCC