Contig 000759:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020E04Sequence714000759 (3)744001349 (2)ref|XP_009147282.1|2e-12PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
JMSF021E06Sequence690000759 (3)606020375ref|XP_010662457.1|2e-77PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-contai
JMSF025D16Sequence676000759 (3)740001349 (2)ref|XP_009147282.1|3e-12PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]

Alignment

This contig is upended


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JMSF020E04+                 AATAGAATTAATGTGATTAAANGAATATTTATGAATTTAAAGCAAAGGGAAACT
                      ____________________________________________________________
consensus                   AATAGAATTAATGTGATTAAANGAATATTTATGAATTTAAAGCAAAGGGAAACT
 
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JMSF021E06+                                     GGTTCACCTATTAGATAATTAACTAACTCTCCTA
JMSF020E04+           CCAATTGAGAGAAGACTAGGGATTTGGGTTCACCTATTAGATAATTAACTAACTCTCCTA
JMSF025D16+                                     GGTTCACCTATTAGATAATTAACTAACTCTCCTA
                      ____________________________________________________________
consensus             CCAATTGAGAGAAGACTAGGGATTTGGGTTCACCTATTAGATAATTAACTAACTCTCCTA
 
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JMSF021E06+           AGTATTAATTCTTATGACTATAGTGATGATTGCTTCAAATATATCCTAATACTCCGTCGA
JMSF020E04+           AATATCAATTCTTATAACTATAGTGATGATTGCCTCATATATATCCTAATACTCCGTCGA
JMSF025D16+           AATATCAATTCTTATAACTATAGTGATGATTGCCTCATATATATCCTAATACTCCGTCGA
                      ____________________________________________________________
consensus             AATATCAATTCTTATAACTATAGTGATGATTGCCTCATATATATCCTAATACTCCGTCGA
 
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JMSF021E06+           GCTACTAGGTTGTATCTAATTAACTGTGATCATCCGTCGATATCTCACCAACATTAATTA
JMSF020E04+           GCTACTAGGTTGTATCCAATTAACTATGATCATCCGTCGATATCTCACCAACATTAATTA
JMSF025D16+           GCTACTAGGTTGTATCCAATTAACTATGATCATCCGTCGATATCTCACCAACATTAATTA
                      ____________________________________________________________
consensus             GCTACTAGGTTGTATCCAATTAACTATGATCATCCGTCGATATCTCACCAACATTAATTA
 
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JMSF021E06+           AACCCATTAAGCAACAATCAAATATCACCACAAATACCTAAAGCTATGTCTAGTTTAGGT
JMSF020E04+           AACCCATTAAGCAACAATCAAATATCACCACAAATACCTAAAGCTATGTCTAGTTTAGGT
JMSF025D16+           AACCCATTAAGCAACAATCAAATATCACCACAAATACCTAAAGCTATGTCTAGTTTAGGT
                      ____________________________________________________________
consensus             AACCCATTAAGCAACAATCAAATATCACCACAAATACCTAAAGCTATGTCTAGTTTAGGT
 
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JMSF021E06+           CAATTGTGTTTATCTTACGAGTTCTAGGTTCATAATTCACCTGTCAGTTCTTCTTATGAA
JMSF020E04+           CAATTGTGTTTATCTTATGAGTTCTAGGTTCATAATTCACCTGTCAGTTCTTCTTATGAA
JMSF025D16+           CAATTGTGTTTATCTTATGAGTTCTAGGTTCATAATTCACCTGTCAGTTCTTCTTATGAA
                      ____________________________________________________________
consensus             CAATTGTGTTTATCTTATGAGTTCTAGGTTCATAATTCACCTGTCAGTTCTTCTTATGAA
 
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JMSF021E06+           CCCTAATATTAGAATTATGCAATGGCCAGGTACACAATCCACAATCAAAATACATAAGAT
JMSF020E04+           CCCTAATATTATAGTTATGCAGTGGCCAGGCACACAATCCACAATTAAAATACATAAAAT
JMSF025D16+           CCCTAATATTATAGTTATGCAGTGGCCAGGCACACAATCCACAATTAAAATACATAAAAT
                      ____________________________________________________________
consensus             CCCTAATATTATAGTTATGCAGTGGCCAGGCACACAATCCACAATTAAAATACATAAAAT
 
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JMSF021E06+           AAATATAATCAAGTTCAATAATTAAACTGAAATTGGAAGAATCAACACAT---GAAAAAT
JMSF020E04+           AAATATAATCAAGTTCAATTATTCAATTGAAATTAGAAGAATCAACACATCAGGAAGAAT
JMSF025D16+           AAATATAATCAAGTTCAATTATTCAATTGAAATTAGAAGAATCAACACATCAGGAAGAAT
                      ____________________________________________________________
consensus             AAATATAATCAAGTTCAATTATTCAATTGAAATTAGAAGAATCAACACATCAGGAAGAAT
 
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JMSF021E06+           AGTCAATTGAGCTAATCCAGGCTAATCCAAATCCCTAATTAAACTTCTAGCCAATAATCA
JMSF020E04+           AATCAATTAATCTAATATAGGCTAATCCAAATCCCTAATTTAAATTCTAGCCAAAAATCA
JMSF025D16+           AATCAATTAATCTAATATAGGCTAATCCAAATCCCTAATTTAAATTCTAGCCAAAAATCA
                      ____________________________________________________________
consensus             AATCAATTAATCTAATATAGGCTAATCCAAATCCCTAATTTAAATTCTAGCCAAAAATCA
 
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JMSF021E06+           TATTTGAATGTTCAAGAAATAACATTCTGGAAATTTTAACAAGAAATAAAAATA      
JMSF020E04+           TATTTGAATGTTCAAGAAATAACATTCTGGAAATTTTAACAAGAAATAAAAATA      
JMSF025D16+           TATTTGAATGTTCAAGAAATAACATTCTGGAAATTTTAACAAGAAATAAAAATAGAGACA
                      ____________________________________________________________
consensus             TATTTGAATGTTCAAGAAATAACATTCTGGAAATTTTAACAAGAAATAAAAATAGAGACA
 
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JMSF025D16+           GAAGAAAGTAATTCAAGCCTAGAGAAGCGATAGCTGCAACCGAAGCTCCGCTGCCTGCAA
                      ____________________________________________________________
consensus             GAAGAAAGTAATTCAAGCCTAGAGAAGCGATAGCTGCAACCGAAGCTCCGCTGCCTGCAA
 
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JMSF025D16+           TCTCTCGCTTGCCCAGACCTTCTTTCGTACTTTTCCCTTCTCCTTTTTTTGTTCTGTTCC
                      ____________________________________________________________
consensus             TCTCTCGCTTGCCCAGACCTTCTTTCGTACTTTTCCCTTCTCCTTTTTTTGTTCTGTTCC