Contig 000757:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021M24Sequence528000757 (5)ref|XP_009616503.1|3e-88PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis]690007116 (5)gb|KHG09712.1|1e-89Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]
JMFF042P16Sequence652000757 (5)ref|XP_009616503.1|3e-112PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis]658007116 (5)gb|KHG09712.1|4e-57Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]
JMSF016C10Sequence228000757 (5)emb|CDO99385.1|7e-17unnamed protein product [Coffea canephora]727007116 (5)gb|KHG09712.1|9e-94Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]
JMSF023M09Sequence639000757 (5)ref|XP_009616503.1|2e-115PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis]791007116 (5)gb|KHG09712.1|2e-90Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]
JMSF025A15Sequence678000757 (5)ref|XP_009616503.1|1e-99PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis]768007116 (5)gb|KHG09712.1|7e-102Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]

Alignment

This contig is upended


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JMSF025A15+                                                    CTCCATAGCCTTGCAATCA
                      ____________________________________________________________
consensus                                                      CTCCATAGCCTTGCAATCA
 
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JMFF042P16+                                           TTGTACCAACCTGTGCAATTTCTTCTGA
JMSF023M09+                                ATTTGCGGAAATTGTACCAACCTGTGCAATTTCTTCTGA
JMSF025A15+           ACTCACCAATTCTCTTTCCCCATTTGCGGAAATTGTACCAACCTGTGCAATTTCTTCTGA
                      ____________________________________________________________
consensus             ACTCACCAATTCTCTTTCCCCATTTGCGGAAATTGTACCAACCTGTGCAATTTCTTCTGA
 
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JMFF042P16+           TGTACTTATCATCCGTGCTCTGCTCTTCAGGTTTGTGACCACAGAATCAACAGCCATGGT
JMSF023M09+           TGTACTTATCATCCGTGCTCTGCTCTTCAGGTTTGTGACCACAGAATCAACAGCCATGGT
JMSF025A15+           TGTACTTATCATCCGTGCTCTG-TCTTCAGGTTTGTGACCACAGAATCAACAGCCATGGT
                      ____________________________________________________________
consensus             TGTACTTATCATCCGTGCTCTGCTCTTCAGGTTTGTGACCACAGAATCAACAGCCATGGT
 
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JMFF042P16+           GATACCACGTCTAAGATCCATTGCATTCATGCCAGCTGCAACTGACTTACAGCCTTCAGC
JMSF023M09+           GATACCACGTCTAAGATCCATTGCATTCATGCCAGCTGCAACTGACTTACAGCCTTCAGC
JMFF021M24+                      TAAGATCCATTGCATTCATGCCAGCTGCAACTGACTTACAGCCTTCAGC
JMSF025A15+           GATACCACGTCTAAGATCCATTGCATTCATGCCAGCTGCAACTGACTTACAGCCTTCAGC
                      ____________________________________________________________
consensus             GATACCACGTCTAAGATCCATTGCATTCATGCCAGCTGCAACTGACTTACAGCCTTCAGC
 
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JMFF042P16+           AAATATAGCCCGTGTGAGGACAGTTGCACAAGTGGTACCATCACCAGCAACATCATTAGT
JMSF023M09+           AAATATAGCCCGTGTGAGGACAGTTGCACAAGTGGTACCATCACCAGCAACATCATTAGT
JMFF021M24+           AAATATAGCCCGTGTGAGGACAGTTGCACAAGTGGTACCATCACCAGCAACATCATTAGT
JMSF025A15+           AAATATAGCCCGTGTGAGGACAGTTGCACAAGTGGTACCATCACCAGCAACATCATTAGT
                      ____________________________________________________________
consensus             AAATATAGCCCGTGTGAGGACAGTTGCACAAGTGGTACCATCACCAGCAACATCATTAGT
 
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JMFF042P16+           AGCATTAGCAACCTGCTTTACCAGGCTCGCACCAACATTCTTCACTTTGTTGTTGAATTC
JMSF023M09+           AGCATTAGCAACCTGCTTTACCAGGCTCGCACCAACATTCTTCACTTTGTTGTTGAATTC
JMFF021M24+           AGCATTAGCAACCTGCTTTACCAGGCTCGCACCAACATTCTTCACTTTGTTGTTGAATTC
JMSF025A15+           AGCATTAGCAACCTGCTTTACCAGGCTCGCACCAACATTCTTCACTTTGTTGTTGAATTC
                      ____________________________________________________________
consensus             AGCATTAGCAACCTGCTTTACCAGGCTCGCACCAACATTCTTCACTTTGTTGTTGAATTC
 
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JMFF042P16+           AACACTTTTTGCAACTGTGACACCATCTTTTGTTACTTTAGGGGCACCCCAACTTTGTTC
JMSF023M09+           AACACTTTTTGCAACTGTGACACCATCTTTTGTTACTTTAGGGGCACCCCAACTTTGTTC
JMFF021M24+           AACACTTTTTGCAACTGTGACACCATCTTTTGTTACTTTAGGGGCACCCCAACTTTGTTC
JMSF025A15+           AACACTTTTTGCAACTGTGACACCATCTTTTGTTACTTTAGGGGCACCCCAACTTTGTTC
                      ____________________________________________________________
consensus             AACACTTTTTGCAACTGTGACACCATCTTTTGTTACTTTAGGGGCACCCCAACTTTGTTC
 
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JMFF042P16+           AATAACAACATTACGTCCCTTGGGACCCATAGTAACTTTAACTGCATCAGCAAGTTCTTC
JMSF023M09+           AATAACAACATTACGTCCCTTGGGACCCATAGTAACTTTAACTGCATCAGCAAGTTCTTC
JMFF021M24+           AATAACAACATTACGTCCCTTGGGACCCATAGTAACTTTAACTGCATCAGCAAGTTCTTC
JMSF025A15+           AATAACAACATTACGTCCCTTGGGACCCATAGTAACTTTAACTGCATCAGCAAGTTCTTC
                      ____________________________________________________________
consensus             AATAACAACATTACGTCCCTTGGGACCCATAGTAACTTTAACTGCATCAGCAAGTTCTTC
 
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JMFF042P16+           TACACCCTGAAGCATCAAGGCCCGAGCCTCCACTCCAAATCTAATATCCTTAGCAGCATA
JMSF023M09+           TACACCCTGAAGCATCAAGGCCCGAGCCTCCACTCCAAATCTAATATCCTTAGCAGCATA
JMFF021M24+           TACACCCTGAAGCATCAAGGCCCGAGCCTCCACTCCAAATCTAATATCCTTAGCAGCATA
JMSF016C10+                  TGAAGCATCAAGGCCCGAGCCTCCACTCCAAATCTAATATCCTTAGCAGCATA
JMSF025A15+           TACACCCTGAAGCATCAAGGCCCGAGCCTCCACTCCAAATCTAATATCCTTAGCAGCATA
                      ____________________________________________________________
consensus             TACACCCTGAAGCATCAAGGCCCGAGCCTCCACTCCAAATCTAATATCCTTAGCAGCATA
 
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JMFF042P16+           ATTTCTGCTCCAGCCTAACCTACTACCAACCTGCTGGGAGCTGCTTTTCGCAACCCTGGC
JMSF023M09+           ATTTCTGCTCCAGCCTAACCTACTACCAACCTGCTGGGAGCTGCTTTTCGCAACCCTGGC
JMFF021M24+           ATTTCTGCTCCAGCCTAACCTACTACCAACCTGCTGGGAGCTGCTTTTCGCAACCCTGGC
JMSF016C10+           ATTTCTGCTCCAGCCTAACCTACTACCAACCTGCTGGGAGCTGCTTTTCGCAACCCTGGC
JMSF025A15+           ATTTCTGCTCCAGCCTAACCTACTACCAACCTGCTGGGAGCTGCTTTTCGCAACCCTGGC
                      ____________________________________________________________
consensus             ATTTCTGCTCCAGCCTAACCTACTACCAACCTGCTGGGAGCTGCTTTTCGCAACCCTGGC
 
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JMFF042P16+           TTTGGAGGCAA                                                 
JMSF023M09+           TTTGGAGGCAATGTTCGATAAGAAACGATGCATGATTTATGTATTGATAATGAGTAGATA
JMFF021M24+           TTTGGAGGCAATGTTCGATAAGAAACGATGCATGATTTATGTATTGATAATGAGTAGATA
JMSF016C10+           TTTGGAGGCAATGTTCGATAAGAAACGATGCATGATTTATGTATTGATAATGAGTAGATA
JMSF025A15+           TTTGGAGGCAATGTTCGATAAGAAACGATGCATGATTTATGTATTGATAATGAGTAGATA
                      ____________________________________________________________
consensus             TTTGGAGGCAATGTTCGATAAGAAACGATGCATGATTTATGTATTGATAATGAGTAGATA
 
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JMSF023M09+           CGCTTCGTCAGAGTTTGTCAATGAGGAAGCGCACAGAAAGAAAGAAGAGAGTAGAGATC 
JMFF021M24+           CGCTTCGTCAGAGTTTGTCAATGAGGAAGCGCACAGAAAGAAAGAAGAGAGTAGAGATC 
JMSF016C10+           CGCTTCGTCAGAGTTTGTCAATGAGGAAGCGCACAGAAAGAAAGAAGAGAGTAG      
JMSF025A15+           CGCTTCGTCAGAGTTTGTCAATGAGGAAGCGCACAGAAAGAAAGAAGAGAGTAGAGATCC
                      ____________________________________________________________
consensus             CGCTTCGTCAGAGTTTGTCAATGAGGAAGCGCACAGAAAGAAAGAAGAGAGTAGAGATCC