Contig 000756:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF024M14+                                                  GACGGGCACGATTCTTTTGT
JMSF024M14-                                                   GACGGGCACGATTCTTTTGT
                      ____________________________________________________________
consensus                                                     GACGGGCACGATTCTTTTGT
 
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rJMSF024M14+          TCTCGTCTGTCCGAGTATCGAAGGCTCTCCTTGCGTTGTAGGCTTCCTCGCTTCGCGCCG
JMSF024M14-           TCTCGTCTGTCCGAGTATCGAAGGCTCTCCTTGCGTTGTAGGCTTCCTCGCTTCGCGCCG
                      ____________________________________________________________
consensus             TCTCGTCTGTCCGAGTATCGAAGGCTCTCCTTGCGTTGTAGGCTTCCTCGCTTCGCGCCG
 
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rJMSF024M14+          TTTTCGTCGATTCTTCCTTCTATTTTCACTTCCACGTAGTGATGGTAATCAGTGGGGGCC
JMSF024M14-           TTTTCGTCGATTCTTCCTTCTATTTTCACTTCCACGTAGTGATGGTAATCAGTGGGGGCC
                      ____________________________________________________________
consensus             TTTTCGTCGATTCTTCCTTCTATTTTCACTTCCACGTAGTGATGGTAATCAGTGGGGGCC
 
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rJMSF024M14+          GTGGCTTATCAAAGAGGCGGTGACCACCGGAGAAAGATGTCGGGCGAGGGAGTGTTTAAA
JMSF024M14-           GTGGCTTATCAAAGAGGCGGTGACCACCGGAGAAAGATGTCGGGCGAGGGAGTGTTTAAA
                      ____________________________________________________________
consensus             GTGGCTTATCAAAGAGGCGGTGACCACCGGAGAAAGATGTCGGGCGAGGGAGTGTTTAAA
 
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rJMSF024M14+          AGGGAATGTGGTTACTAAGACCACGGTGTCGGGTGGCCCGGTTTGTGCGCCCCCGGTTAA
JMSF024M14-           AGGGAATGTGGTTACTAAGACCACGGTGTCGGGTGGCCCGGTTTGTGCGCCCCCGGTTAA
                      ____________________________________________________________
consensus             AGGGAATGTGGTTACTAAGACCACGGTGTCGGGTGGCCCGGTTTGTGCGCCCCCGGTTAA
 
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rJMSF024M14+          AGCGGTGCGTCCCGTTAAGCCTTCTGGAGTTTCTATCCCCGTTGTTGCTGCTCGGCTTCA
JMSF024M14-           AGCGGTGCGTCCCGTTAAGCCTTCTGGAGTTTCTATCCCCGTTGTTGCTGCTCGGCTTCA
                      ____________________________________________________________
consensus             AGCGGTGCGTCCCGTTAAGCCTTCTGGAGTTTCTATCCCCGTTGTTGCTGCTCGGCTTCA
 
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rJMSF024M14+          TTATCAACCGTCCGGCACTTGTGAATCAGTTGTGTTTCCCATGCCTGACCTTCTGGAGGA
JMSF024M14-           TTATCAACCGTCCGGCACTTGTGAATCAGTTGTGTTTCCCATGCCTGACCTTCTGGAGGA
                      ____________________________________________________________
consensus             TTATCAACCGTCCGGCACTTGTGAATCAGTTGTGTTTCCCATGCCTGACCTTCTGGAGGA
 
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rJMSF024M14+          TGCTTTGATAGTTAACTGGTTGTTGGGGGGAAACATGTTAGTATAGTGGTTTTCTTTGTT
JMSF024M14-           TGCTTTGATAGTTAACTGGTTGTTGGGGGGAAACATGTTAGTATAGTGGTTTTCTTTGTT
                      ____________________________________________________________
consensus             TGCTTTGATAGTTAACTGGTTGTTGGGGGGAAACATGTTAGTATAGTGGTTTTCTTTGTT
 
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rJMSF024M14+          ATCGTGGGTTGCATTCTGTATTTAGTTACGTCTGTTTTGGGTTTTTGCTATTGTGTGCAC
JMSF024M14-           ATCGTGGGTTGCATTCTGTATTTAGTTACGTCTGTTTTGGGTTTTTGCTATTGTGTGCAC
                      ____________________________________________________________
consensus             ATCGTGGGTTGCATTCTGTATTTAGTTACGTCTGTTTTGGGTTTTTGCTATTGTGTGCAC
 
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rJMSF024M14+          ACGTATATTGCAAACTATGCTCACTATAGTTTTTGGTCATACTACCTTTGTGCATACAGA
JMSF024M14-           ACGTATATTGCAAACTATGCTCACTATAGTTTTTGGTCATACTACCTTTGTGCATACAGA
                      ____________________________________________________________
consensus             ACGTATATTGCAAACTATGCTCACTATAGTTTTTGGTCATACTACCTTTGTGCATACAGA
 
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rJMSF024M14+          TACGTTTGTTTGTGCACAATCTTCTTGTGCACATTTTACTTGTTGATGCTACTGTAACGT
JMSF024M14-           TACGTTTGTTTGTGCACAATCTTCTTGTGCACATTTTACTTGTTGATGCTACTGTAACGT
                      ____________________________________________________________
consensus             TACGTTTGTTTGTGCACAATCTTCTTGTGCACATTTTACTTGTTGATGCTACTGTAACGT
 
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rJMSF024M14+          CACAC                                                       
JMSF024M14-           CACACAAGCAGTGTTTAATTAATGCTAACGTTATTTTTGGGTTGGATGGTAAAAAAAAAA
                      ____________________________________________________________
consensus             CACACAAGCAGTGTTTAATTAATGCTAACGTTATTTTTGGGTTGGATGGTAAAAAAAAAA