clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF005K11 | Sequence | 377 | 000742 (3) | 313 | 008527 (6) | ref|XP_007222908.1| | 1e-05 | hypothetical protein PRUPE_ppa003634mg [Prunus persica] gb|EMJ24107.1| hypotheti | |||
JMSF020M01 | Sequence | 689 | 000742 (3) | ref|XP_009375689.1| | 107 | PREDICTED: uncharacterized protein LOC103964477 [Pyrus x bretschneideri] | 744 | 008527 (6) | ref|XP_009607738.1| | 6e-100 | PREDICTED: uncharacterized protein LOC104101894 isoform X1 [Nicotiana tomentosi |
JMSF023G23 | Sequence | 651 | 000742 (3) | ref|XP_009375689.1| | 106 | PREDICTED: uncharacterized protein LOC103964477 [Pyrus x bretschneideri] | 713 | 008527 (6) | ref|XP_009607739.1| | 5e-84 | PREDICTED: uncharacterized protein LOC104101894 isoform X2 [Nicotiana tomentosi |
This contig is upended
. : . : . : . : . : . :
JMSF020M01+ CTTNGTATAGCCCTTGCCTGAAATGCACA
____________________________________________________________
consensus CTTNGTATAGCCCTTGCCTGAAATGCACA
. : . : . : . : . : . :
JMSF020M01+ ACTTGCTCTTCTAACCGGACAACCTCTTCCTCCAAAACAGCTACCTCGGCCAAAAGCTCG
JMSF023G23+ TCTAACCGGACAACCTCTTCCTCCAAAACAGCTACCTCGGCCAAAAGCTCG
____________________________________________________________
consensus ACTTGCTCTTCTAACCGGACAACCTCTTCCTCCAAAACAGCTACCTCGGCCAAAAGCTCG
. : . : . : . : . : . :
JMSF020M01+ AGTGTAGATGAAGGAAGATAAAGAGGCAAGCGAGGTAGAGCTCCCAGAGGTCTTGTAAAT
JMSF023G23+ AGTGTAGATGAAGGAAGATAAGGAGGCAAGCGAGGTAGAGCTCCCAGAGGTCTTGTAAAT
____________________________________________________________
consensus AGTGTAGATGAAGGAAGATAAGGAGGCAAGCGAGGTAGAGCTCCCAGAGGTCTTGTAAAT
. : . : . : . : . : . :
JMSF020M01+ GCTCTCTCAAGAGCTCTATGGACATTCTCTTCATGCCTGAGTTTCTTCTTTAGCTTATCT
JMSF023G23+ GCTCTCTCAAGAGCTCTATGGACATTCTCTTCATGCCTGAGTTTCTTCTTTAGCTTATCT
____________________________________________________________
consensus GCTCTCTCAAGAGCTCTATGGACATTCTCTTCATGCCTGAGTTTCTTCTTTAGCTTATCT
. : . : . : . : . : . :
JMSF020M01+ ACATCTTGTAACAATGCCATCTTCTTCTCTCTGGTTGCTTTTCGCCGATTTATCATTGGT
JMSF023G23+ ACATCTTGTAACAATGCCATCTTCTTCTCTCTGGTTGCTTTTCGCCGATTTATCATTGGT
____________________________________________________________
consensus ACATCTTGTAACAATGCCATCTTCTTCTCTCTGGTTGCTTTTCGCCGATTTATCATTGGT
. : . : . : . : . : . :
JMSF020M01+ TTCTCTGTGTGCATTCTCTTGTTACTCTGAACTCCCATTTTTTCTTTTTCAAGCTTCCCA
JMSF023G23+ TTCTCTGTGTGCATTCTCTTGTTACTCTGAACTCCCATTTTTTCTTTTTCAAGCTTCCCA
____________________________________________________________
consensus TTCTCTGTGTGCATTCTCTTGTTACTCTGAACTCCCATTTTTTCTTTTTCAAGCTTCCCA
. : . : . : . : . : . :
JMSF020M01+ GGAGCCTTCATAGGCTGCAGATTGCTCCTGGCTCGAGTATTCATCTTCCTTCACTCCCCA
JMSF023G23+ GGAGCCTTCATAGGCTGCAGATTGCTCCTGGCTCGAGTATTCATCTTCCTTCACTCCCCA
____________________________________________________________
consensus GGAGCCTTCATAGGCTGCAGATTGCTCCTGGCTCGAGTATTCATCTTCCTTCACTCCCCA
. : . : . : . : . : . :
JMSF020M01+ GAGAAAAATAAAAAATCAGTAACCCCTGCCAGTCTTATAGGTGGTAAGCGTAAATCATGA
JMSF005K11+ CTTATAGGTGGTAAGCGTAAATCATGA
JMSF023G23+ GAGAAAAATAAAAAATCAGTAACCCCTGCCAGTCTTATAGGTGGTAAGCGTAAATCATGA
____________________________________________________________
consensus GAGAAAAATAAAAAATCAGTAACCCCTGCCAGTCTTATAGGTGGTAAGCGTAAATCATGA
. : . : . : . : . : . :
JMSF020M01+ AAGCGGGAAAAAATTCAGAGTTGAAATCAAGAATGCAAAGCCCCCACACCCAAAAGACAA
JMSF005K11+ AAGCGGGAAAAAATTCAGAGTTGAAATCAAGAATGCAAAGCCCCCACACCCAAAAGACAA
JMSF023G23+ AAGCGGGAAAAAATTCAGAGTTGAAATCAAGAATGCAAAGCCCCCACACCCAAAAGACAA
____________________________________________________________
consensus AAGCGGGAAAAAATTCAGAGTTGAAATCAAGAATGCAAAGCCCCCACACCCAAAAGACAA
. : . : . : . : . : . :
JMSF020M01+ AACCTGCACGAGCCTCTCTGCAATGGTTCAGTCCGATCCCAGCGCTTATTGATCTTCGCG
JMSF005K11+ AACCTGCACGAGCCTCTCTGCAATGGTTCAGTCCGATCCCAGCGCTTATTGATCTTCGCG
JMSF023G23+ AACCTGCACGAGCCTCTCTGCAATGGTTCAGTCCGATCCCAGCGCTTATTGATCTTCGCG
____________________________________________________________
consensus AACCTGCACGAGCCTCTCTGCAATGGTTCAGTCCGATCCCAGCGCTTATTGATCTTCGCG
. : . : . : . : . : . :
JMSF020M01+ AAAGTCAATATAGTTTTAGTTTATCAATACCATTTTCTCCTCCTCTGCTCTGTATCTATA
JMSF005K11+ AAAGTCAATATAGTTTTAGTTTATCAATACCATTTTCTCCTCCTCTGCTCTGTATCTATA
JMSF023G23+ AAAGTCAATATAGTTTTAGTTTATCAATACCATTTTCTCCTCCTCTGCTCTGTATCTATA
____________________________________________________________
consensus AAAGTCAATATAGTTTTAGTTTATCAATACCATTTTCTCCTCCTCTGCTCTGTATCTATA
. : . : . : . : . : . :
JMSF020M01+ TATATTTTTATATCATCATCCCCAGAGCATATCCTGCCTTCTCTCAAGAAACATTTAACC
JMSF005K11+ TATATTTTTATATCATCATCCCCAGAGCATATCCTGCCTTCTCTCAAGAAACATTTAACC
JMSF023G23+ TATATTTTTATATCATCATCCCCAGAGCATATCCTGCCTTCTCTCAAGAAACATCTAACC
____________________________________________________________
consensus TATATTTTTATATCATCATCCCCAGAGCATATCCTGCCTTCTCTCAAGAAACATTTAACC