clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF047P15 | Sequence | 631 | 000740 (3) | ref|XP_004230684.1| | 5e-80 | PREDICTED: magnesium transporter MRS2-3 [Solanum lycopersicum] | 580 | 004144 (3) | ref|XP_004136933.1| | 2e-76 | PREDICTED: magnesium transporter MRS2-3-like [Cucumis sativus] ref|XP_004159919. |
JMSF022L24 | Sequence | 643 | 000740 (3) | ref|XP_004230684.1| | 2e-79 | PREDICTED: magnesium transporter MRS2-3 [Solanum lycopersicum] | 808 | 004144 (3) | ref|XP_009603566.1| | 3e-112 | PREDICTED: magnesium transporter MRS2-3 isoform X1 [Nicotiana tomentosiformis] |
JMSF027F13 | Sequence | 683 | 000740 (3) | ref|XP_004230684.1| | 5e-62 | PREDICTED: magnesium transporter MRS2-3 [Solanum lycopersicum] | 739 | 021478 | ref|XP_009603566.1| | 2e-69 | PREDICTED: magnesium transporter MRS2-3 isoform X1 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF027F13+ C
____________________________________________________________
consensus C
. : . : . : . : . : . :
JMSF027F13+ AGAATTCAAAACAATTTTATAAAGGCAAATTTAATAATTCATGCTAAAGTATTACAGTGC
____________________________________________________________
consensus AGAATTCAAAACAATTTTATAAAGGCAAATTTAATAATTCATGCTAAAGTATTACAGTGC
. : . : . : . : . : . :
JMSF027F13+ TGTAACAGTCTAACAGAAATAATAGCAATTCAGAAATTTAAAGAAATTACTTCTATCAGT
____________________________________________________________
consensus TGTAACAGTCTAACAGAAATAATAGCAATTCAGAAATTTAAAGAAATTACTTCTATCAGT
. : . : . : . : . : . :
JMSF027F13+ TTCTTTCAACTGTGAACATTTTAAGCCAATATATATATACGCATTTCGTATAGATAAAGA
____________________________________________________________
consensus TTCTTTCAACTGTGAACATTTTAAGCCAATATATATATACGCATTTCGTATAGATAAAGA
. : . : . : . : . : . :
JMFF047P15+ CCTGGGAGTTGGTAGCTTGGTGGTGACGCAGAATTCTGTGCTGGAGCTCATCGACG
JMSF027F13+ GAAACCTGGGAGTTGGTAGCTTGGTGGTGACGCAGAATTCTGTGCTGGAGCTCATCGACG
JMSF022L24+ CCTGGGAGTTGGTAGCTTGGTGGTGACGCAGAATTCTGTGCTGGAGCTCATCGACG
____________________________________________________________
consensus GAAACCTGGGAGTTGGTAGCTTGGTGGTGACGCAGAATTCTGTGCTGGAGCTCATCGACG
. : . : . : . : . : . :
JMFF047P15+ AAAGGAGCAACAGAAGGGTCTCTAGAATTGAGGAGAAGGACCTCTTGTGCTGTAATAATG
JMSF027F13+ AAAGGAGCAACAGAAGGGTCTCTAGAATTGAGGAGAAGGACCTCTTGTGCTGTAATAATG
JMSF022L24+ AAAGGAGCAACAGAAGGGTCTCTAGAATTGAGGAGAAGGACCTCTTGTGCTGTAATAATG
____________________________________________________________
consensus AAAGGAGCAACAGAAGGGTCTCTAGAATTGAGGAGAAGGACCTCTTGTGCTGTAATAATG
. : . : . : . : . : . :
JMFF047P15+ GCCTTGATATGCTCCAGATTGATGACGATTGCCCGCTCACGGCCGAGCACAGTGGAAGGG
JMSF027F13+ GCCTTGATATGCTCCAGATTGATGACGATTGCCCGCTCACGGCCGAGCACAGTGGAAGGG
JMSF022L24+ GCCTTGATATGCTCCAGATTGATGACGATTGCCCGCTCACGGCCGAGCACAGTGGAAGGG
____________________________________________________________
consensus GCCTTGATATGCTCCAGATTGATGACGATTGCCCGCTCACGGCCGAGCACAGTGGAAGGG
. : . : . : . : . : . :
JMFF047P15+ TAAGACAGAAGTGGGTCCAGAATACGAAGATCCCGGGCCGGAAGCCCAGTCCGGCGCATG
JMSF027F13+ TAAGACAGAAGTGGGTCCAGAATACGAAGATCCCGGGCCGGAAGCCCAGTCCGGCGCATG
JMSF022L24+ TAAGACAGAAGTGGGTCCAGAATACGAAGATCCCGGGCCGGAAGCCCAGTCCGGCGCATG
____________________________________________________________
consensus TAAGACAGAAGTGGGTCCAGAATACGAAGATCCCGGGCCGGAAGCCCAGTCCGGCGCATG
. : . : . : . : . : . :
JMFF047P15+ ATAGCATGTTTTCCGACCTCCACCACCTGCGCTTGCCCAGTAGAGTCCAGGAGAAGCCAT
JMSF027F13+ ATAGCATGTTTTCCGACCTCCACCACCTGCGCTTGCCCAGTAGAGTCCAGGAGAAGCCAT
JMSF022L24+ ATAGCATGTTTTCCGACCTCCACCACCTGCGCTTGCCCAGTAGAGTCCAGGAGAAGCCAT
____________________________________________________________
consensus ATAGCATGTTTTCCGACCTCCACCACCTGCGCTTGCCCAGTAGAGTCCAGGAGAAGCCAT
. : . : . : . : . : . :
JMFF047P15+ GGCCGGACCCCGGCAGCCTTCTTTCGCAGCCCACCGCCGACGATTACGCCTCCCGGCAAG
JMSF027F13+ GGCCGGACCCCGGCAGCCTTCTTTCGCAGCCCACCGCCGACGATTACGCCTCCCGGCAAG
JMSF022L24+ GGCCGGACCCCGGCAGCCTTCTTTCGCAGCCCACCGCCGACGATTACGCCTCCCGGCAAG
____________________________________________________________
consensus GGCCGGACCCCGGCAGCCTTCTTTCGCAGCCCACCGCCGACGATTACGCCTCCCGGCAAG
. : . : . : . : . : . :
JMFF047P15+ GGATTGTTAGTGCGGAGGGGATCTCCATCGTCGACCGGCGAATCGGCGTTGAGCTTCGCC
JMSF027F13+ GGATTGTTAGTGCGGAGGGGATCTCCATCGTCGACCGGCGAATCGGCGTTGAGCTTCGCC
JMSF022L24+ GGATTGTTAGTGCGGAGGGGATCTCCATCGTCGACCGGCGAATCGGCGTTGAGCTTCGCC
____________________________________________________________
consensus GGATTGTTAGTGCGGAGGGGATCTCCATCGTCGACCGGCGAATCGGCGTTGAGCTTCGCC
. : . : . : . : . : . :
JMFF047P15+ GGAGGATTGCCCTTCATCAGTGTTCGTAACTGAACTTTTCAGTTAAAAAGTAGGATCGGC
JMSF027F13+ GGAGGATTGCCCTTCATCAGTGTTCGTAACTGAACTTTTCAGTTAAAAAGTAGGATCGGC
JMSF022L24+ GGAGGATTGCCCTTCATCAGTGTTCGTAACTGAACTTTTCAGTTAAAAAGTAGGATCGGC
____________________________________________________________
consensus GGAGGATTGCCCTTCATCAGTGTTCGTAACTGAACTTTTCAGTTAAAAAGTAGGATCGGC
. : . : . : . : . : . :
JMFF047P15+ AGTTCGGCACCTTTC
JMSF027F13+ AGTTCGGCACCTTTC
JMSF022L24+ AGTTCGGCACCTTTCTCCCAGAAAATTACCAAAAATACGAGTCATTTATTTTTATTTTTC
____________________________________________________________
consensus AGTTCGGCACCTTTCTCCCAGAAAATTACCAAAAATACGAGTCATTTATTTTTATTTTTC