| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF018G13 | Sequence | 597 | 000731 (5) | emb|CDX98105.1| | 4e-20 | BnaA06g08560D [Brassica napus] | 804 | 000731 (5) | ref|XP_011077630.1| | 2e-13 | PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 isoform X1 [Sesamum indicum] |
| JMSF021I14 | Sequence | 632 | 000731 (5) | ref|XP_010678749.1| | 2e-12 | PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Beta vulgaris subsp. vu | 771 | 004263 (2) | emb|CDP00517.1| | 2e-09 | unnamed protein product [Coffea canephora] |
| JMSF038C08 | Sequence | 667 | 000731 (5) | ref|XP_006437791.1| | 9e-23 | hypothetical protein CICLE_v10031638mg [Citrus clementina] ref|XP_006484306.1| P | 885 | 000731 (5) | ref|XP_006356449.1| | 5e-14 | PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF018G13- GCAAAGAGACATTCTTGGAGTCTACTGCTTCCGGATTC-AAATACATTACTAA
rJMSF038C08- CAAAGAGACATTCTTGGAGTCTACTGCTTCCGGATTCAAAATACATTACTAA
____________________________________________________________
consensus GCAAAGAGACATTCTTGGAGTCTACTGCTTCCGGATTCAAAATACATTACTAA
. : . : . : . : . : . :
rJMSF018G13- CATTATACTTACAGAAAAACGTAGGAAACAAGGTGCATCCTTTACATCCAAACTAAACCC
rJMSF038C08- CATTATACTTACAGAAAAACGTAGGAAACAAGGTGCATCCTTTACATCCAAACTAAACCC
____________________________________________________________
consensus CATTATACTTACAGAAAAACGTAGGAAACAAGGTGCATCCTTTACATCCAAACTAAACCC
. : . : . : . : . : . :
rJMSF018G13- ACAGAGCTTCATCATATGGTTAAACCATCCAGTCCTTGAGCATAGTCTTTGCCCTTGATG
rJMSF038C08- ACAGAGCTTCATCATATGGTTAAACCATCCAGTCCTTGAGCATAGTCTTTGCCCTTGATG
____________________________________________________________
consensus ACAGAGCTTCATCATATGGTTAAACCATCCAGTCCTTGAGCATAGTCTTTGCCCTTGATG
. : . : . : . : . : . :
rJMSF018G13- ATGACAATTTGTGCTTTTGGAGATGCCCGAGGGAAGCACAGCAACTCCCTTCGGAACTTG
rJMSF038C08- ATGACAATTTGTGCTTTTGGAGATGCCCGAGGGAAGCACAGCAACTCCCTTCGGAACTTG
____________________________________________________________
consensus ATGACAATTTGTGCTTTTGGAGATGCCCGAGGGAAGCACAGCAACTCCCTTCGGAACTTG
. : . : . : . : . : . :
rJMSF018G13- ATCACCGTGCAGCCATCTTTTATAAAATAAGATTCCGTAATAACAACTCTCTCTAGTATA
rJMSF038C08- ATCACCGTGCAGCCATCTTTTATAAAATAAGATTCCGTAATAACAACTCTCTCTAGTATA
____________________________________________________________
consensus ATCACCGTGCAGCCATCTTTTATAAAATAAGATTCCGTAATAACAACTCTCTCTAGTATA
. : . : . : . : . : . :
rJMSF018G13- GGGGATTTTGAGAGCAGCATTTTCACAAAAAACATTTCAATTGTAGATCCACAAAACAGA
rJMSF038C08- GGGGATTTTGAGAGCAGCATTTTCACAAAAAACATTTCAATTGTAGATCCACAAAACAGA
____________________________________________________________
consensus GGGGATTTTGAGAGCAGCATTTTCACAAAAAACATTTCAATTGTAGATCCACAAAACAGA
. : . : . : . : . : . :
rJMSF018G13- TCAATCTTGATTGTTTTAAGCATTTTTAGATCCTGATTAATAATGCAACTCTCCAGATCC
rJMSF038C08- TCAATCTTGATTGTTTTAAGCATTTTTAGATCCTGATTAATAATGCAACTCTCCAGATCC
____________________________________________________________
consensus TCAATCTTGATTGTTTTAAGCATTTTTAGATCCTGATTAATAATGCAACTCTCCAGATCC
. : . : . : . : . : . :
rJMSF018G13- TTCAGAAGTGTTGAAGCAGCTTCTATGTCATCATCTGAACATGTTCCTGTAATGGCCAGT
rJMSF038C08- TTCAGAAGTGTTGAAGCAGCTTCTATGTCATCATCTGAACATGTTCCTGTAATGGCCAGT
____________________________________________________________
consensus TTCAGAAGTGTTGAAGCAGCTTCTATGTCATCATCTGAACATGTTCCTGTAATGGCCAGT
. : . : . : . : . : . :
rJMSF018G13- TCACATAGGTTGGGAGATTTTTGAAGCAACTGCAAAATACCCATGAGCTGCTTTTCATCG
rJMSF038C08- TCACATAGGTTGGGAGATTTTTGAAGCAACTGCAAAATACCCATGAGCTGCTTTTCATCG
____________________________________________________________
consensus TCACATAGGTTGGGAGATTTTTGAAGCAACTGCAAAATACCCATGAGCTGCTTTTCATCG
. : . : . : . : . : . :
rJMSF018G13- GCAAACTTGAAAGAATGCAGTTCGATTACTTGCAGATTTATTGCAGTTGGGAAGGAGGCT
rJMSF038C08- GCAAACTTGAAAGAATGCAGTTCGATTACTTGCAGATTTATTGCAGTTGGGAAGGAGGCT
____________________________________________________________
consensus GCAAACTTGAAAGAATGCAGTTCGATTACTTGCAGATTTATTGCAGTTGGGAAGGAGGCT
. : . : . : . : . : . :
rJMSF018G13- ACTTCAACATCTTCCCAATTCAACAACAAGCGGCCCTCCATGCATAGAACCTTAATTGCT
rJMSF038C08- ACTTCAACATCTTCCCAATTCAACAACAAGCGGCCCTCCATGCATAGAACCTTAATTGCT
____________________________________________________________
consensus ACTTCAACATCTTCCCAATTCAACAACAAGCGGCCCTCCATGCATAGAACCTTAATTGCT
. : . : . : . : . : . :
rJMSF018G13- TTCAAATGAAGTGCAAACCATCTCGATTCAACCACACATTTATCACCAGTAATAGACAAG
rJMSF038C08- TTCAAATGAAGTGCAAACCATCTCGATTCAACCACACATTTATCACCAGTAATAGACAAG
____________________________________________________________
consensus TTCAAATGAAGTGCAAACCATCTCGATTCAACCACACATTTATCACCAGTAATAGACAAG
. : . : . : . : . : . :
rJMSF018G13- CTTTCAGGTTTTGGAGCACTAATCTTAAATTTATTGATCCCTCCACAATAAAATAAAACA
rJMSF038C08- CTTTCAAGTTTTGGAGCACTAATCTTAAAATTATTGATCCCTCCACAATAAAATAAAACA
JMSF038C08+ ATCTTAAAATTATTGATCCCTCCACAATAAAATAAAACA
____________________________________________________________
consensus CTTTCAGGTTTTGGAGCACTAATCTTAAAATTATTGATCCCTCCACAATAAAATAAAACA
. : . : . : . : . : . :
rJMSF018G13- AGCTTCTCAGGATNAGGAATACTATAC
rJMSF038C08- AGCTTCTCAAGATTAGGAATACTATACACAATTCCATTAGCATTATGATTAAAAACAACA
JMSF038C08+ AGCTTCTCAAGATTAGGAATACTATACACAATTCCATTAGCATTATGATTAAAAACAACA
____________________________________________________________
consensus AGCTTCTCAAGATTAGGAATACTATACACAATTCCATTAGCATTATGATTAAAAACAACA
. : . : . : . : . : . :
rJMSF038C08- GACCGGAAATCTAATGAAGTGACAGAGGGAAAAATACAAGGAGCATTTAGTGG
JMSF018G13+ ATGAAGTGACAGAGGGAAAAATACAAGGAGCATTTAGTGGGAAATCA
JMSF038C08+ GACCGGAAATCTAATGAAGTGACAGAGGGAAAAATACAAGGAGCATTTAGTGGGAAATCA
____________________________________________________________
consensus GACCGGAAATCTAATGAAGTGACAGAGGGAAAAATACAAGGAGCATTTAGTGGGAAATCA
. : . : . : . : . : . :
JMSF018G13+ AAAGACACATCGCAGAGTCCCAGCTGCTTGATTGTCCGGCACGAGACTATACAAAGAGGC
JMSF038C08+ AAAGACACATCGCAGAGTCCCAGCTGCTTGATTGTCCGGCACGAGACTATACAAAGAGGC
____________________________________________________________
consensus AAAGACACATCGCAGAGTCCCAGCTGCTTGATTGTCCGGCACGAGACTATACAAAGAGGC
. : . : . : . : . : . :
JMSF018G13+ AGCTTATATCGACCTTCCCCATGAGAGAGGTAGACTTCCTCAACGCCATTTCTTGATAGA
JMSF038C08+ AGCTTATATCGACCTTCCCCATGAGAGAGGTAGACTTCCTCAACGCCATTTCTTGATAGA
____________________________________________________________
consensus AGCTTATATCGACCTTCCCCATGAGAGAGGTAGACTTCCTCAACGCCATTTCTTGATAGA
. : . : . : . : . : . :
JMSF018G13+ GAAAGAAACCACTGATCTAAATCGGACTGCTCCAGCTTAGGTGAATTAAATCTGAGGGCA
JMSF038C08+ GAAAGAAACCACTGATCTAAATCGGACTGCTCCAGCTTAGGTGAATTAAATCTGAGGGCA
____________________________________________________________
consensus GAAAGAAACCACTGATCTAAATCGGACTGCTCCAGCTTAGGTGAATTAAATCTGAGGGCA
. : . : . : . : . : . :
JMSF018G13+ GTGATGGCTAGACTAAATTTCTTCACGGGTCGAACACGCTTCAAGAGAATGTATGTTATT
JMSF038C08+ GTGATGGCTAGACTAAATTTCTTCACGGGTCGAACACGCTTCAAGAGAATGTATGTTATT
____________________________________________________________
consensus GTGATGGCTAGACTAAATTTCTTCACGGGTCGAACACGCTTCAAGAGAATGTATGTTATT
. : . : . : . : . : . :
JMSF018G13+ ACTTTAAAATAAGATACAGGACCATGACCTTTGTAGTTTCCGAAACACCCGAAGAAGTTC
JMSF038C08+ ACTTTAAAATAAGATACAGGACCATGACCTTTGTAGTTTCCGAAACACCCGAAGAAGTTC
____________________________________________________________
consensus ACTTTAAAATAAGATACAGGACCATGACCTTTGTAGTTTCCGAAACACCCGAAGAAGTTC
. : . : . : . : . : . :
JMSF018G13+ CAATCAAACGCAAGCTGTCCATGCTGCAACCAAACATCATTCCAATGGGTTGAGAGTAGA
JMSF038C08+ CAATCAAACGCAAGCTGTCCATGCTGCAACCAAACATCATTCCAATGGGTTGAGAGTAGA
JMSF021I14+ CAAGCCTCCCATGCTGCAACCAAACATCATTCCAGTGGTTTGAGAGTAGA
____________________________________________________________
consensus CAATCAAACGCAAGCTGTCCATGCTGCAACCAAACATCATTCCAATGGGTTGAGAGTAGA
. : . : . : . : . : . :
JMSF018G13+ GCAGTTCTGGCAGCGTCTCGGGTGGGCAAACACTCCAAAATTTTGTTCTTTACCTCTCCC
JMSF038C08+ GCAGTTCTGGCAGCGTCTCGGGTGGGCAAACACTCCAAAATTTTGTTCTTTACCTCTCCC
JMSF021I14+ GCAGTTCTGGCAGCGTCTTGGGTGGGCAAACACTCCAAAATTCTGTGCTTTATCTCTACC
____________________________________________________________
consensus GCAGTTCTGGCAGCGTCTCGGGTGGGCAAACACTCCAAAATTTTGTTCTTTACCTCTCCC
. : . : . : . : . : . :
JMSF018G13+ GGCAGATAACTTATTAGATCC
JMSF038C08+ GGCAGATAACTTATTAGATCCCTACTTGCATCCG
JMSF021I14+ GGGAGAGGACTTATTAAATCCCTACTTGCATCCGCTACGGTGGTTTTGATTAGCCGACGT
____________________________________________________________
consensus GGCAGATAACTTATTAGATCCCTACTTGCATCCGCTACGGTGGTTTTGATTAGCCGACGT
. : . : . : . : . : . :
JMSF021I14+ CGACCCATTAAATTGATGGGTCACCCGAAATCAAAAGCTAAAATCCTTCTATTCTTCAAA
____________________________________________________________
consensus CGACCCATTAAATTGATGGGTCACCCGAAATCAAAAGCTAAAATCCTTCTATTCTTCAAA
. : . : . : . : . : . :
JMSF021I14+ TGTAAATTTAGTATTTCGTGAATAAACGAAATTAGGAAGCTAAGAGTTGGGGAGAAAAAG
____________________________________________________________
consensus TGTAAATTTAGTATTTCGTGAATAAACGAAATTAGGAAGCTAAGAGTTGGGGAGAAAAAG
. : . : . : . : . : . :
JMSF021I14+ AGATTGGGGGAAAAGTGACAAATTAGAAACCCTCACCTCTGATGTTTGGGCCTTTGCGGG
____________________________________________________________
consensus AGATTGGGGGAAAAGTGACAAATTAGAAACCCTCACCTCTGATGTTTGGGCCTTTGCGGG
. : . : . : . : . : . :
JMSF021I14+ TTAGAAAAGCCGAAGGGAAATGCTGTTCCTCTAGAAGATTAGCCGTAGAGCAGAGTAGCA
____________________________________________________________
consensus TTAGAAAAGCCGAAGGGAAATGCTGTTCCTCTAGAAGATTAGCCGTAGAGCAGAGTAGCA
. : . : . : . : . : . :
JMSF021I14+ GACGCCAGACGGAAAAGACTAAGGCCGGCCGCCGGTGGAGACGGAGAGACGTCTCAGTCC
____________________________________________________________
consensus GACGCCAGACGGAAAAGACTAAGGCCGGCCGCCGGTGGAGACGGAGAGACGTCTCAGTCC