| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF013M11 | Sequence | 506 | 000726 (7) | emb|CDP02087.1| | 1e-46 | unnamed protein product [Coffea canephora] | |||||
| JMFF014M21 | Sequence | 505 | 000726 (7) | emb|CDP02087.1| | 3e-46 | unnamed protein product [Coffea canephora] | 787 | 002556 (5) | ref|XP_009614932.1| | 1e-28 | PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian |
| JMFF037C09 | Sequence | 501 | 000726 (7) | emb|CDP02087.1| | 2e-45 | unnamed protein product [Coffea canephora] | 682 | 002556 (5) | ref|XP_009614932.1| | 1e-22 | PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian |
| JMSF006A07 | Sequence | 269 | 000726 (7) | emb|CDP02087.1| | 2e-13 | unnamed protein product [Coffea canephora] | |||||
| JMSF021C08 | Sequence | 642 | 000726 (7) | ref|XP_006338583.1| | 2e-81 | PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial-like [Sol | 750 | 002556 (5) | ref|XP_009614932.1| | 1e-28 | PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian |
| JMSF027B24 | Sequence | 625 | 000726 (7) | emb|CDP02087.1| | 4e-90 | unnamed protein product [Coffea canephora] | 700 | 002556 (5) | ref|XP_009768206.1| | 2e-26 | PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian |
| JMSF037H07 | Sequence | 621 | 000726 (7) | emb|CDP02087.1| | 3e-89 | unnamed protein product [Coffea canephora] | 735 | 002556 (5) | ref|XP_009614932.1| | 4e-28 | PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian |
This contig is upended
. : . : . : . : . : . :
JMSF027B24+ TTCCCATCAGATGAAAGAAC
JMSF037H07+ CATCAGATGAAAGAAC
____________________________________________________________
consensus TTCCCATCAGATGAAAGAAC
. : . : . : . : . : . :
JMSF027B24+ ACTTGCCATAACCTGCACCTCATGGTAAAATCCAGCAGGAAAAAGGGGTCGTATTGGTCT
JMSF037H07+ ACTTGCCATAACCTGCACCTCATGGTAAAATCCAGCAGGAAAAAGGGGTCGTATTGGTCT
JMSF021C08+ CCTCATGGTAAAATCCAGCAGGAAAAAGGGGTCGTATTGGTCT
____________________________________________________________
consensus ACTTGCCATAACCTGCACCTCATGGTAAAATCCAGCAGGAAAAAGGGGTCGTATTGGTCT
. : . : . : . : . : . :
JMSF027B24+ ATCAATGAGACGGCCACAGAGAAGTTCACGTTCCTTTGGAGCACCCTCCCTCCGCATGAA
JMSF037H07+ ATCAATGAGACGGCCACAGAGAAGTTCACGTTCCTTTGGAGCACCCTCCCTCCGCATGAA
JMFF014M21+ CGCATGAA
JMFF037C09+ TGAA
JMFF013M11+ CCGCATGAA
JMSF021C08+ ATCAATGAGACGGCCACAGAGAAGTTCACGTTCCTTTGGAGCACCCTCCCTCCGCATGAA
____________________________________________________________
consensus ATCAATGAGACGGCCACAGAGAAGTTCACGTTCCTTTGGAGCACCCTCCCTCCGCATGAA
. : . : . : . : . : . :
JMSF027B24+ TGTACTTGGAATTAAACCTTGAGCAAATTGTTTCTCTTGGTAATCAACAGTGAGGGGTAG
JMSF037H07+ TGTACTTGGAATTAAACCTTGAGCAAATTGTTTCTCTTGGTAATCAACAGTGAGGGGTAG
JMFF014M21+ TGTACTTGGAATTAAACCTTGAGCAAATTGTTTCTCTTGGTAATCAACAGTGAGGGGTAG
JMFF037C09+ TGTACTTGGAATTAAACCTTGAGCAAATTGTTTCTCTTGGTAATCAACAGTGAGGGGTAG
JMFF013M11+ TGTACTTGGAATTAAACCTTGAGCAAATTGTTTCTCTTGGTAATCAACAGTGAGGGGTAG
JMSF021C08+ TGTACTTGGAATTAAACCTTGAGCAAATTGTTTCTCTTGGTAATCAACAGTGAGGGGTAG
____________________________________________________________
consensus TGTACTTGGAATTAAACCTTGAGCAAATTGTTTCTCTTGGTAATCAACAGTGAGGGGTAG
. : . : . : . : . : . :
JMSF027B24+ AAAATCGCGAACTGCGTCG-CCCTTTGCAGAGGCCACGGTTGAGAGAACTTTAGTCTCGT
JMSF037H07+ AAAATCGCGAACTGCGTCG-CCCTTTGCAGAGGCCACGGTTGAGAGAACTTTAGTCTCGT
JMFF014M21+ AAAATCGCGAACTGCGTCGCCCCTTTGCAGAGGCCACGGTTGAGAGAACTTTAGTCTCGT
JMFF037C09+ AAAATCGCGAACTGCGTCGCCCCTTTGCAGAGGCCACGGTTGAGAGAACTTTAGTCTCGT
JMFF013M11+ AAAATCGCGAACTGCGTCGCCCCTTTGCAGAGGCCACGGTTGAGAGAACTTTAGTCTCGT
JMSF021C08+ AAAATCGCGAACTGCGTCG-CCCTTTGCAGAGGCCACGGTTGAGAGAACTTTAGTCTCGT
____________________________________________________________
consensus AAAATCGCGAACTGCGTCGCCCCTTTGCAGAGGCCACGGTTGAGAGAACTTTAGTCTCGT
. : . : . : . : . : . :
JMSF027B24+ CCATAGCTAGGACCACTGAGCCATTGGCAAACCGAGCAATCTTCCCAGTTTCCAGAGTAA
JMSF037H07+ CCATAGCTAGGACCACTGAGCCATTGGCAAACCGAGCAATCTTCCCAGTTTCCAGAGTAA
JMFF014M21+ CCATAGCTAGGACCACTGAGCCATTGGCAAACCGAGCAATCTTCCCAGTTTCCAGAGTAA
JMFF037C09+ CCATAGCTAGGACCACTGAGCCATTGGCAAACCGAGCAATCTTCCCAGTTTCCAGAGTAA
JMFF013M11+ CCATAGCTAGGACCACTGAGCCATTGGCAAACCGAGCAATCTTCCCAGTTTCCAGAGTAA
JMSF021C08+ CCATAGCTAGGACCACTGAGCCATTGGCAAACCGAGCAATCTTCCCAGTTTCCAGAGTAA
____________________________________________________________
consensus CCATAGCTAGGACCACTGAGCCATTGGCAAACCGAGCAATCTTCCCAGTTTCCAGAGTAA
. : . : . : . : . : . :
JMSF027B24+ TTTTCCGCGAACCAATTTCGAATTCCTCAGTAAATGATTCTAGAATCTTTGTACCAGCCA
JMSF037H07+ TTTTCCGCGAACCAATTTCGAATTCCTCAGTAAATGATTCTAGAATCTTTGTACCAGCCA
JMFF014M21+ TTTTCCGCGAACCAATTTCGAATTCCTCAGTAAATGATTCTAGAATCTTTGTACCAGCCA
JMFF037C09+ TTTTCCGCGAACCAATTTCGAATTCCTCAGTAAATGATTCTAGAATCTTTGTACCAGCCA
JMFF013M11+ TTTTCCGCGAACCAATTTCGAATTCCTCAGTAAATGATTCTAGAATCTTTGTACCAGCCA
JMSF021C08+ TTTTCCGCGAACCAATTTCGAATTCCTCAGTAAATGATTCTAGAATCTTTGTACCAGCCA
____________________________________________________________
consensus TTTTCCGCGAACCAATTTCGAATTCCTCAGTAAATGATTCTAGAATCTTTGTACCAGCCA
. : . : . : . : . : . :
JMSF027B24+ TGTGTGTTTCTGAATCGGAAGATGGTGAAGACAGAGTGGAAGTAGCGAAGCCAAGGCGGC
JMSF037H07+ TGTGTGTTTCTGAATCGGAAGATGGTGAAGACAGAGTGGAAGTAGCGAAGCCAAGGCGGC
JMFF014M21+ TGTGTGTTTCTGAATCGGAAGATGGTGAAGACAGAGTGGAAGTAGCGAAGCCAAGGCGGC
JMFF037C09+ TGTGTGTTTCTGAATCGGAAGATGGTGAAGACAGAGTGGAAGTAGCGAAGCCAAGGCGGC
JMFF013M11+ TGTGTGTTTCTGAATCGGAAGATGGTGAAGACAGAGTGGAAGTAGCGAAGCCAAGGCGGC
JMSF006A07+ GACAGAGTGGAAGTAGCGAAGCCAAGGCGGC
JMSF021C08+ TGTGTGTTTCTGAATCGGAAGATGGTGAAGACAGAGTGGAAGTAGCGAAGCCAAGGCGGC
____________________________________________________________
consensus TGTGTGTTTCTGAATCGGAAGATGGTGAAGACAGAGTGGAAGTAGCGAAGCCAAGGCGGC
. : . : . : . : . : . :
JMSF027B24+ CGCTGCATATGGTGCGGAAGCCAAATCTTTGCCATGTGAGGACGTGAGGTAGGGTTGAGA
JMSF037H07+ CGCTGCATATGGTGCGGAAGCCAAATCTTTGCCATGTGAGGACGTGAGGTAGGGTTGAGA
JMFF014M21+ CGCTGCATATGGTGCGGAAGCCAAATCTTTGCCATGTGAGGACGTGAGGTAGGGTTGAGA
JMFF037C09+ CGCTGCATATGGTGCGGAAGCCAAATCTTTGCCATGTGAGGACGTGAGGTAGGGTTGAGA
JMFF013M11+ CGCTGCATATGGTGCGGAAGCCAAATCTTTGCCATGTGAGGACGTGAGGTAGGGTTGAGA
JMSF006A07+ CGCTGCATATGGTGCGGAAGCCAAATCTTTGCCATGTGAGGACGTGAGGTAGGGTTGAGA
JMSF021C08+ CGCTGCATATGGTGCGGAAGCCAAATCTTTGCCATGTGAGGACGTGAGGTAGGGTTGAGA
____________________________________________________________
consensus CGCTGCATATGGTGCGGAAGCCAAATCTTTGCCATGTGAGGACGTGAGGTAGGGTTGAGA
. : . : . : . : . : . :
JMSF027B24+ TAAGTGGGTTAGCTTTACTCGTCACTGAGGCCATTATGGGTTTAAGGAAACTGGAATTTA
JMSF037H07+ TAAGTGGGTTAGCTTTACTCGTCACTGAGGCCATTATGGGTTTAAGGAAACTGGAATTTA
JMFF014M21+ TAAGTGGGTTAGCTTTACTCGTCACTGAGGCCATTATGGGTTTAAGGAAACTGGAATTTA
JMFF037C09+ TAAGTGGGTTAGCTTTACTCGTCACTGAGGCCATTATGGGTTTAAGGAAACTGGAATTTA
JMFF013M11+ TAAGTGGGTTAGCTTTACTCGTCACTGAGGCCATTATGGGTTTAAGGAAACTGGAATTTA
JMSF006A07+ TAAGTGGGTTAGCTTTACTCGTCACTGAGGCCATTATGGGTTTAAGGAAACTGGAATTTA
JMSF021C08+ TAAGTGGGTTAGCTTTACTCGTCACTGAGGCCATTATGGGTTTAAGGAAACTGGAATTTA
____________________________________________________________
consensus TAAGTGGGTTAGCTTTACTCGTCACTGAGGCCATTATGGGTTTAAGGAAACTGGAATTTA
. : . : . : . : . : . :
JMSF027B24+ GGGGAGAAGGAGACAGAGTTGAAGAGCTAGGGTTTAAGCAGGGTTTTTCCTGGGAATGAA
JMSF037H07+ GGGGAGAAGGAGACAGAGTTGAAGAGCTAGGGTTTAAGCAGGGTTTTTCCTGGGAATGAA
JMFF014M21+ GGGGAGAAGGAGACAGAGTTGAAGAGCTAGGGTTTAAGCAGGGTTTTTCCTGGGAATGAA
JMFF037C09+ GGGGAGAAGGAGACAGAGTTGAAGAGCTAGGGTTTAAGCAGGGTTTTTCCTGGGAATGAA
JMFF013M11+ GGGGAGAAGGAGACAGAGTTGAAGAGCTAGGGTTTAAGCAGGGTTTTTCCTGGGAATGAA
JMSF006A07+ GGGGAGAAGGAGACAGAGTTGAAGAGCTAGGGTTTAAGCAGGGTTTTTCCTGGGAATGAA
JMSF021C08+ GGGGAGAAGGAGACAGAGTTGAAGAGCTAGGGTTTAAGCAGGGTTTTTCCTGGGAATGAA
____________________________________________________________
consensus GGGGAGAAGGAGACAGAGTTGAAGAGCTAGGGTTTAAGCAGGGTTTTTCCTGGGAATGAA
. : . : . : . : . : . :
JMSF027B24+ AACG
JMSF037H07+ AACG
JMFF014M21+ AACGTGGATCTGCCCCC
JMFF037C09+ AACGTGGATCTGCCCCC
JMFF013M11+ AACGTGGATCTGCCCCC
JMSF006A07+ AACGTGGATCTGCCCCCTGCTCGGGCTAGGCGCTTCAACGGTGAATTACAGTATCGC
JMSF021C08+ AACGTGGATCTGCCCCCTGCTCGGGCTAGGCGCTTCAACGGTGAATTACAGTATCGCACC
____________________________________________________________
consensus AACGTGGATCTGCCCCCTGCTCGGGCTAGGCGCTTCAACGGTGAATTACAGTATCGCACC