| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010I23 | Sequence | 554 | 000723 (4) | ref|XP_006344538.1| | 7e-43 | PREDICTED: homogentisate phytyltransferase 1, chloroplastic-like isoform X1 [So | 771 | 008171 (4) | ref|XP_009621427.1| | 1e-104 | PREDICTED: homogentisate phytyltransferase 1, chloroplastic isoform X2 [Nicotia |
| JMSF015K23 | Sequence | 338 | 000723 (4) | ref|XP_006344538.1| | 1e-12 | PREDICTED: homogentisate phytyltransferase 1, chloroplastic-like isoform X1 [So | 761 | 008171 (4) | ref|XP_009621427.1| | 1e-112 | PREDICTED: homogentisate phytyltransferase 1, chloroplastic isoform X2 [Nicotia |
| JMSF021A12 | Sequence | 661 | 000723 (4) | ref|XP_010323392.1| | 5e-65 | PREDICTED: homogentisate phytyltransferase 1, chloroplastic isoform X2 [Solanum | 808 | 008171 (4) | ref|XP_009799515.1| | 2e-118 | PREDICTED: homogentisate phytyltransferase 1, chloroplastic isoform X2 [Nicotia |
| JMSF021M02 | Sequence | 695 | 000723 (4) | ref|XP_010323392.1| | 1e-71 | PREDICTED: homogentisate phytyltransferase 1, chloroplastic isoform X2 [Solanum | 722 | 008171 (4) | ref|XP_009621427.1| | 2e-104 | PREDICTED: homogentisate phytyltransferase 1, chloroplastic isoform X2 [Nicotia |
This contig is upended
. : . : . : . : . : . :
JMSF021M02+ AACGGCCAAGAACCAACAGCACTTGCAAGCCAAAA
JMSF021A12+ A
____________________________________________________________
consensus AACGGCCAAGAACCAACAGCACTTGCAAGCCAAAA
. : . : . : . : . : . :
JMSF021M02+ ACTCATAACAGCAAAAGATGAAACGATCATTATGCCAGTTTTCACCGAATATTCGCCTGA
JMSF021A12+ ACTCATAACAGCAAAAGATGAAACGATCATTATGCCAGTTTTCACCGAATATTCGCCTGA
____________________________________________________________
consensus ACTCATAACAGCAAAAGATGAAACGATCATTATGCCAGTTTTCACCGAATATTCGCCTGA
. : . : . : . : . : . :
JMSF021M02+ TGCTAATGGAAGATATGGTTTGTTCACCTTGTCTATTTCAATATCAGACAACTGATTCAA
JMFF010I23+ CAATATCAGACAACTGATTCAA
JMSF021A12+ TGCTAATGGAAGATATGGTTTGTTCACCTTGTCTATTTCAATATCAGACAACTGATTCAA
____________________________________________________________
consensus TGCTAATGGAAGATATGGTTTGTTCACCTTGTCTATTTCAATATCAGACAACTGATTCAA
. : . : . : . : . : . :
JMSF021M02+ ACCAACTATGTATATATTCATAAAGAGGGCAGCAACAATGGCCTCAAGCGTCCCAGTGAA
JMFF010I23+ ACCAACTATGTATATATTCATAAAGAGGGCAGCAACAATGGCCTCAAGCGTCCCAGTGAA
JMSF021A12+ ACCAACTATGTATATATTCATAAAGAGGGCAGCAACAATGGCCTCAAGCGTCCCAGTGAA
____________________________________________________________
consensus ACCAACTATGTATATATTCATAAAGAGGGCAGCAACAATGGCCTCAAGCGTCCCAGTGAA
. : . : . : . : . : . :
JMSF021M02+ AAATAATGGAGAAATATCTGAGAGCTTCTCAACTGCAAGAAGAGAAACTGAAAGTATGCT
JMFF010I23+ AAATAATGGAGAAATATCTGAGAGCTTCTCAACTGCAAGAAGAGAAACTGAAAGTATGCT
JMSF021A12+ AAATAATGGAGAAATATCTGAGAGCTTCTCAACTGCAAGAAGAGAAACTGAAAGTATGCT
____________________________________________________________
consensus AAATAATGGAGAAATATCTGAGAGCTTCTCAACTGCAAGAAGAGAAACTGAAAGTATGCT
. : . : . : . : . : . :
JMSF021M02+ CAGTGCTGTTCCTATAACCGTATGAGGCCGCGAAAATCTGTAGAAAGCATCCAAAACCCC
JMSF015K23+ TGTAGAAAGCATCCAAAACCCC
JMFF010I23+ CAGTGCTGTTCCTATAACCGTATGAGGCCGCGAAAATCTGTAGAAAGCATCCAAAACCCC
JMSF021A12+ CAGTGCTGTTCCTATAACCGTATGAGGCCGCGAAAATCTGTAGAAAGCATCCAAAACCCC
____________________________________________________________
consensus CAGTGCTGTTCCTATAACCGTATGAGGCCGCGAAAATCTGTAGAAAGCATCCAAAACCCC
. : . : . : . : . : . :
JMSF021M02+ CTGAACTGACTTCGAAGGGCTGTTGGATGGCTCAGATTCAAGAGGATGATCTGAAGCTGC
JMSF015K23+ CTGAACTGACTTCGAAGGGCTGTTGGATGGCTCAGATTCAAGAGGATGATCTGAAGCTGC
JMFF010I23+ CTGAACTGACTTCGAAGGGCTGTTGGATGGCTCAGATTCAAGAGGATGATCTGAAGCTGC
JMSF021A12+ CTGAACTGACTTCGAAGGGCTGTTGGATGGCTCAGATTCAAGAGGATGATCTGAAGCTGC
____________________________________________________________
consensus CTGAACTGACTTCGAAGGGCTGTTGGATGGCTCAGATTCAAGAGGATGATCTGAAGCTGC
. : . : . : . : . : . :
JMSF021M02+ TGCATTCACCGAAAACCCTTCTCTATGTCTTAAGTTAATAATACTTCCATCACTGCTTCC
JMSF015K23+ TGCATTCACCGAAAACCCTTCTCTATGTCTTAAGTTAATAATACTTCCATCACTGCTTCC
JMFF010I23+ TGCATTCACCGAAAACCCTTCTCTATGTCTTAAGTTAATAATACTTCCATCACTGCTTCC
JMSF021A12+ TGCATTCACCGAAAACCCTTCTCTATGTCTTAAGTTAATAATACTTCCATCACTGCTTCC
____________________________________________________________
consensus TGCATTCACCGAAAACCCTTCTCTATGTCTTAAGTTAATAATACTTCCATCACTGCTTCC
. : . : . : . : . : . :
JMSF021M02+ AACATGCTCCAGTGTCGCTAATGGTCTCTGCAATCGCATGGGCAACGGCCAGGGCTTTTC
JMSF015K23+ AACATGCTCTAGTGTCGCTAATGGTCTCTGCAATCGCATGGGCAACGGCCAGGGCTTTTC
JMFF010I23+ AACATGCTCTAGTGTCGCTAATGGTCTCTGCAATCGCATGGGCAACGGCCAGGGCTTTTC
JMSF021A12+ AACATGCTCCAGTGTCGCTAATGGTCTCTGCAATCGCATGGGCAACGGCCAGGGCTTTTC
____________________________________________________________
consensus AACATGCTCTAGTGTCGCTAATGGTCTCTGCAATCGCATGGGCAACGGCCAGGGCTTTTC
. : . : . : . : . : . :
JMSF021M02+ TCCGCCATTCAATGCTTTGCACTTTGAAACTTGTGTTGTTTGATGTGAATATGAAGACGA
JMSF015K23+ TCCGCCATTCAATGCTTTGCACTTTGAAACTTGTGTTGTTTGATGTGAATATGAAGACGA
JMFF010I23+ TCCGCCATTCAATGCTTTGCACTTTGAAACTTGTGTTGTTTGATGTGAATATGAAGACGA
JMSF021A12+ TCCGCCATTCAATGCTTTGCACTTTGAAACTTGTGTTGTTTGATGTGAATATGAAGACGA
____________________________________________________________
consensus TCCGCCATTCAATGCTTTGCACTTTGAAACTTGTGTTGTTTGATGTGAATATGAAGACGA
. : . : . : . : . : . :
JMSF021M02+ CAAGTGAGATTTAAGCGGAAACGAAAGAGAAGATGAAGTTTTCACAATTAGCAGAGACTC
JMSF015K23+ CAAGTGAGATTTAAGCGGAAACGAAAGAGAAGATGAAGTTTTCACAATTAGCAGAGACTC
JMFF010I23+ CAAGTGAGATTTAAGCGGAAACGAAAGAGAAGATGAAGTTTTCACAATTAGCAGAGACTC
JMSF021A12+ CAAGTGAGATTTAAGCGGAAACGAAAGAGAAGATGAAGTTTTCACAATTAGCAGAGACTC
____________________________________________________________
consensus CAAGTGAGATTTAAGCGGAAACGAAAGAGAAGATGAAGTTTTCACAATTAGCAGAGACTC
. : . : . : . : . : . :
JMSF021M02+ CATTTTTGCCTTCTCTCTCTCACTACTTCACTTCACACACGTAATAAGTAACGGAGAACC
JMSF015K23+ CATTTTTGCCTTC
JMFF010I23+ CATTTTTGCCTTCTCTCTCTCACTACTTCACTTCACACACGTAATAAGTAAC
JMSF021A12+ CATTTTTGCCTTCTCTCTCTCACTACTTCACTTCACACACGTAATAAGTAACGGAGAACC
____________________________________________________________
consensus CATTTTTGCCTTCTCTCTCTCACTACTTCACTTCACACACGTAATAAGTAACGGAGAACC