Contig 000702:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF009D10+                                                              ATGACTTT
                      ____________________________________________________________
consensus                                                                 ATGACTTT
 
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rJMSF009D10+          GGGTTCCTTCATATTAAAGGCTATTGACGATGCAGGTCATGATAAAGCAAGTGTTTTCAA
                      ____________________________________________________________
consensus             GGGTTCCTTCATATTAAAGGCTATTGACGATGCAGGTCATGATAAAGCAAGTGTTTTCAA
 
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rJMSF009D10+          AGTTAAAGGACTTGAAGCTGTAGATCGTGCAATTGGACAGTTGGCTAAACTTCTATGGCC
rJMFF022O16+                                                                     C
                      ____________________________________________________________
consensus             AGTTAAAGGACTTGAAGCTGTAGATCGTGCAATTGGACAGTTGGCTAAACTTCTATGGCC
 
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rJMSF009D10+          AGCAGAATCATCTGGGAAATTCCAGTTCTTCATTTGTGTCACCGGAGACCACTCTACA-C
rJMSF012I22+                                               GTCACCGGAGACCACTCTACA-C
rJMFF022O16+          AGCAGAATCATCTGGGAAATTCCAGTTCTGCATTTGTGTCACCGGAGACCACTCTACACC
                      ____________________________________________________________
consensus             AGCAGAATCATCTGGGAAATTCCAGTTCTTCATTTGTGTCACCGGAGACCACTCTACA-C
 
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rJMSF009D10+          CTGTTGAATATGGAGACCACAGCTTCGAACCAGTCCCTTTTGCATTGTGTAGTTTGAAGG
rJMSF012I22+          CTGTTGAATATGGAGACCACAGCTTCGAACCAGTCCCTTTTGCATTGTGTAGTTTGAAGG
rJMFF022O16+          CTGTTGAATATGGAGACCACAGCTTCGAACCAGTCCCTTTTGCATTGTGTAGTTTGAAGG
                      ____________________________________________________________
consensus             CTGTTGAATATGGAGACCACAGCTTCGAACCAGTCCCTTTTGCATTGTGTAGTTTGAAGG
 
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rJMSF009D10+          ACTTTGCGGGTGCAGTGGGGGGAGAGACAGTCCTTTTAGAAACTTCGCTCGACCCATTTC
rJMSF012I22+          ACTTTGTGGGTGCAGTGGGGGGAGAGGCAGTCCTGTTAGAAACTTCGCTCGACCCATTTC
rJMFF022O16+          ACTTTGTGGGTGCAGTGGGGGGAGAGGCAGTCCTGTTAGAAACTTCGCTCGACCCATTTC
                      ____________________________________________________________
consensus             ACTTTGTGGGTGCAGTGGGGGGAGAGGCAGTCCTGTTAGAAACTTCGCTCGACCCATTTC
 
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rJMSF009D10+          CCCTTCCAACTATCAAAGCTGGTGAAGATTTAGCTCTTGATGTGGGAGTAGAAGGCGGTG
rJMSF012I22+          CCCTTCCAACTATCAAAGCTGGTGAAGATTTAGCTATTGATGTGGGAGTAGAAGGCGGCG
rJMFF022O16+          CCCTTCCAACTATCAAAGCTGGTGAAGATTTAGCTATTGATGTGGGAGTAGAAGGCGGCG
                      ____________________________________________________________
consensus             CCCTTCCAACTATCAAAGCTGGTGAAGATTTAGCTATTGATGTGGGAGTAGAAGGCGGCG
 
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rJMSF009D10+          AGAGAAGCAAGCAGCATCGGGCTTTTAGCGGGGACTGTGTTAATGAGTTCAATGAGATAG
rJMSF012I22+          AAAGAAGCAAGCAGCATCAGGCTTTTAGCGGGGACTGTGTTAGTGAGTTCAATGAGATAG
rJMFF022O16+          AAAGAAGCAAGCAGCATCAGGCTTTTAGCGGGGACTGTGTTAGTGAGTTCAATGAGATAG
                      ____________________________________________________________
consensus             AAAGAAGCAAGCAGCATCAGGCTTTTAGCGGGGACTGTGTTAGTGAGTTCAATGAGATAG
 
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rJMSF009D10+          CAGCGGTGAGAGGTTGTCTTGGACGCTTTCCCGGGAGTGAGATGATGGGAATTATAAAGA
rJMSF012I22+          CAGCGGTGAGAGGCTGTCTTGGACGCTTTCCCGGGAGTGAGATGATGGGAATTATAAAGA
rJMFF022O16+          CAGCGGTGAGAGGCTGTCTTGGACGCTTTCCCGGGAGTGAGATGATGGGAATTATAAAGA
rJMSF017J12+                                             AGTGAGATGATGGGAATTATAAAGA
JMSF017J12-                                              AGTGAGATGATGGGAATTATAAAGA
                      ____________________________________________________________
consensus             CAGCGGTGAGAGGCTGTCTTGGACGCTTTCCCGGGAGTGAGATGATGGGAATTATAAAGA
 
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rJMSF009D10+          CGTATCTTAATCTCAAAACATAACAGCACATGCCAATTTGAGGGAAGCTTGAGATTATGT
rJMSF012I22+          CATATCTTAATCTTAAAACATAACAGCACATGCCAATTGGAGGGAAGCTTGAGATTATGT
rJMFF022O16+          CATATCTTAATCTTAAAACATAACAGCACATGCCAATTGGAGGGAAGCTTGAGATTATGT
rJMSF017J12+          CATATCTTAATCTTAAAACATAACAGCACATGCCAATTGGAGGGAAGCTTGAGATTATGT
JMSF017J12-           CATATCTTAATCTTAAAACATAACAGCACATGCCAATTGGAGGGAAGCTTGAGATTATGT
                      ____________________________________________________________
consensus             CATATCTTAATCTTAAAACATAACAGCACATGCCAATTGGAGGGAAGCTTGAGATTATGT
 
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rJMSF009D10+          GATTTCATAATAAGGTAAACCATAATCTTCTTGTGGAAGAAGAGAACAGATAAAAT    
rJMSF012I22+          GATTTCACAATAAGGTAAACCATAATCTTCTTGTGGAAGAAGAGAAAAGAGAAAATGAGA
rJMFF022O16+          GATTTCACAATAAGGTAAACCATAATCTTCTTGTGGAAGAAGAGAAAAGAGAAAATGAGA
rJMSF017J12+          GATTTCACAATAAGGTAAACCATAATCTTCTTGTGGAAGAAGAGAAAAGAGAAAATGAGA
JMSF017J12-           GATTTCACAATAAGGTAAACCATAATCTTCTTGTGGAAGAAGAGAAAAGAGAAAATGAGA
                      ____________________________________________________________
consensus             GATTTCACAATAAGGTAAACCATAATCTTCTTGTGGAAGAAGAGAAAAGAGAAAATGAGA
 
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rJMSF012I22+          TGGATAAAATAGCTAACTGTTCTGAACTGCTATTCCAAATTTTCTGCCTTCTGAACTATA
rJMFF022O16+          TGGATAAAATAGCTAACTGTTCTGAACTGCTATTCCAAATTTTCTGCCTTCTGAACTATA
rJMSF017J12+          TGGATAAAATAGCTAACTGTTCTGAACTGCTATTCCAAATTTTCTGCCTTCTGAACTATA
JMSF017J12-           TGGATAAAATAGCTAACTGTTCTGAACTGCTATTCCAAATTTTCTGCCTTCTGAACTATA
                      ____________________________________________________________
consensus             TGGATAAAATAGCTAACTGTTCTGAACTGCTATTCCAAATTTTCTGCCTTCTGAACTATA
 
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rJMSF012I22+          TTTATGTTCTTTCCTTGATATGCAAACTAGTAGAAGTTGAAGGCTTTCAGATTCTATTTA
rJMFF022O16+          TTTATGTTCTTTCCTTGATATGCAAACTAGTAGAAGTTGAAGGCTTTCAGATTCTATTTA
rJMSF017J12+          TTTATGTTCTTTCCTTGATATGCAAACTAGTAGAAGTTGAAGGCTTTCAGATTCTATTTA
JMSF017J12-           TTTATGTTCTTTCCTTGATATGCAAACTAGTAGAAGTTGAAGGCTTTCAGATTCTATTTA
                      ____________________________________________________________
consensus             TTTATGTTCTTTCCTTGATATGCAAACTAGTAGAAGTTGAAGGCTTTCAGATTCTATTTA
 
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rJMSF012I22+          TTTACTTCCCTCCAGATTAGGATTTAGGAAATAAGATGATAATAACACTCCAGCTGCATT
rJMFF022O16+          TTTACTTCCCTCCAGATTAGGATTTAGGAAATAAGATGATAATAACACTCCAGCTGCATT
rJMSF017J12+          TTTACTTCCCTCCAGATTAGGATTTAGGAAATAAGATGATAATAACACTCCAGCTGCATT
JMSF017J12-           TTTACTTCCCTCCAGATTAGGATTTAGGAAATAAGATGATAATAACACTCCAGCTGCATT
                      ____________________________________________________________
consensus             TTTACTTCCCTCCAGATTAGGATTTAGGAAATAAGATGATAATAACACTCCAGCTGCATT
 
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rJMSF012I22+          TGTACTGTAGTTACTGATGAGGATTTGGATGTAATTTTATTTGATAA             
rJMFF022O16+          TGTACTGTAGTTACTGATGAGGATTTGGATGTAATTTTATTTGATAAAC           
rJMSF017J12+          TGTACTGTAGTTACTGATGAGGATTTGGATGTAATTTTATTTGATAAACCAATGTGTAAT
JMSF017J12-           TGTACTGTAGTTACTGATGAGGATTTGGATGTAATTTTATTTGATAAA-CAATGTGTAAT
                      ____________________________________________________________
consensus             TGTACTGTAGTTACTGATGAGGATTTGGATGTAATTTTATTTGATAAACCAATGTGTAAT
 
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rJMSF017J12+          GGTGGGAGAGACAT                                              
JMSF017J12-           GGTGGGAGAGACATATTTTTTATTTTTTATTTATAAGAACTTTTAACCTGAAAAAAAAAA
                      ____________________________________________________________
consensus             GGTGGGAGAGACATATTTTTTATTTTTTATTTATAAGAACTTTTAACCTGAAAAAAAAAA