| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006L10 | Sequence | 498 | 000700 (5) | ref|XP_004234956.1| | 1e-75 | PREDICTED: splicing factor 3A subunit 3 [Solanum lycopersicum] | 813 | 009663 (6) | ref|XP_009619235.1| | 3e-85 | PREDICTED: splicing factor 3A subunit 3 [Nicotiana tomentosiformis] ref|XP_00961 |
| JMFF015B24 | Sequence | 553 | 000700 (5) | ref|XP_004234956.1| | 2e-88 | PREDICTED: splicing factor 3A subunit 3 [Solanum lycopersicum] | 740 | 009663 (6) | emb|CDP05074.1| | 1e-50 | unnamed protein product [Coffea canephora] |
| JMFF031I05 | Sequence | 521 | 000700 (5) | ref|XP_009757142.1| | 3e-77 | PREDICTED: splicing factor 3A subunit 3 [Nicotiana sylvestris] ref|XP_009757143. | 174 | 009663 (6) | |||
| JMSF017H24 | Sequence | 237 | 000700 (5) | ref|XP_009619235.1| | 3e-14 | PREDICTED: splicing factor 3A subunit 3 [Nicotiana tomentosiformis] ref|XP_00961 | 777 | 009663 (6) | ref|XP_009619235.1| | 3e-70 | PREDICTED: splicing factor 3A subunit 3 [Nicotiana tomentosiformis] ref|XP_00961 |
| JMSF030K14 | Sequence | 639 | 000700 (5) | ref|XP_004234956.1| | 5e-102 | PREDICTED: splicing factor 3A subunit 3 [Solanum lycopersicum] | 725 | 009663 (6) | ref|XP_009619235.1| | 8e-75 | PREDICTED: splicing factor 3A subunit 3 [Nicotiana tomentosiformis] ref|XP_00961 |
This contig is upended
. : . : . : . : . : . :
JMFF015B24+ CCTGACTTCAATCCTAGTGCAGCTAATGCCTCCTTCAGCTTATCAG
____________________________________________________________
consensus CCTGACTTCAATCCTAGTGCAGCTAATGCCTCCTTCAGCTTATCAG
. : . : . : . : . : . :
JMFF015B24+ GGCCCACTTCCATCAATTCCTCAACTGTACTATAGTAGTCAAGATCAATCACAGTATGAT
____________________________________________________________
consensus GGCCCACTTCCATCAATTCCTCAACTGTACTATAGTAGTCAAGATCAATCACAGTATGAT
. : . : . : . : . : . :
JMFF015B24+ CCATTGAAGCACTCCCATTTTCCTGAGAATCATCATCCCATCCTTCAAAGCTCCCATTTG
____________________________________________________________
consensus CCATTGAAGCACTCCCATTTTCCTGAGAATCATCATCCCATCCTTCAAAGCTCCCATTTG
. : . : . : . : . : . :
JMFF015B24+ TCCATTGCTCTTCAAACTCAGCAACCACCTTTGAAAATATCCTATCAGTGTCCTGCAAAG
____________________________________________________________
consensus TCCATTGCTCTTCAAACTCAGCAACCACCTTTGAAAATATCCTATCAGTGTCCTGCAAAG
. : . : . : . : . : . :
JMFF015B24+ GCTCTGTCTGCTCGAAAAAATATATCAAATACTCAAGTAACTTCTGCAAATATTCCCTGT
____________________________________________________________
consensus GCTCTGTCTGCTCGAAAAAATATATCAAATACTCAAGTAACTTCTGCAAATATTCCCTGT
. : . : . : . : . : . :
JMFF015B24+ ACTGCCTTGTTGACTTCAGTTTGCGCGAAATCTTGTGTGGTTTGTAGAAGACGTCAAGAT
JMSF030K14+ TGCGCGAAATCTTGTGTGGTTTGTAGAAGACGTCAAGAT
____________________________________________________________
consensus ACTGCCTTGTTGACTTCAGTTTGCGCGAAATCTTGTGTGGTTTGTAGAAGACGTCAAGAT
. : . : . : . : . : . :
JMFF015B24+ AAGCAGTATATTCAATTGGCTCACCAAATTTGGAGTTAATATATTCACCAAACAGTTCAT
JMSF030K14+ AAGCAGTATATTCAATTGGCTCACCAAATTTGGAGTTAATATATTCACCAAACAGTTCAT
____________________________________________________________
consensus AAGCAGTATATTCAATTGGCTCACCAAATTTGGAGTTAATATATTCACCAAACAGTTCAT
. : . : . : . : . : . :
JMFF015B24+ GCAAATCTAGGTATCGCCCAAACCCCTCTTCCCCACTAAACTCCATCTGTGGCTCCTCCT
JMFF031I05+ TTCCCCACTAAACTCCATCTGTGGCTCCTCCT
JMFF006L10+ CCACTAAACTCCATCTGTGGCTCCTCCT
JMSF030K14+ GCAAATCTAGGTATCGCCCAAACCCCTCTTCCCCACTAAACTCCATCTGTGGCTCCTCCT
____________________________________________________________
consensus GCAAATCTAGGTATCGCCCAAACCCCTCTTCCCCACTAAACTCCATCTGTGGCTCCTCCT
. : . : . : . : . : . :
JMFF015B24+ TGAGAAGCTGCTCATACTCATCACTGGTATCGACAACACGTGCAGCAGGATGCCGTCTAT
JMFF031I05+ TGAGAAGCTGCTCATACTCATCACTGGTATCGACAACACGTGCAGCAGGATGCCGTCTAT
JMFF006L10+ TGAGAAGCTGCTCATACTCATCACTGGTATCGACAACACGTGCAGCAGGATGCCGTCTAT
JMSF030K14+ TGAGAAGCTGCTCATACTCATCACTGGTATCGACAACACGTGCAGCAGGATGCCATCTAT
____________________________________________________________
consensus TGAGAAGCTGCTCATACTCATCACTGGTATCGACAACACGTGCAGCAGGATGCCGTCTAT
. : . : . : . : . : . :
JMFF015B24+ GGTATTCCCGGATCTCCTTTAATCTGT
JMFF031I05+ GGTATTCCCGGATCTCCTTTAATCTGTCATAAAAAGCACTGAACACGTTAGTTCCAGTTG
JMFF006L10+ GGTATTCCCGGATCTCCTTTAATCTGTCATAAAAAGCACTGAACACGTTAGTTCCAGTTG
JMSF030K14+ GGTATTCCCGGATCTCCTTTAATCTGTCATAAAAAGCACTGAACACGTTAGTTCCAGTTG
____________________________________________________________
consensus GGTATTCCCGGATCTCCTTTAATCTGTCATAAAAAGCACTGAACACGTTAGTTCCAGTTG
. : . : . : . : . : . :
JMFF031I05+ CAGTCTGGCCTCCAAGAGCTGCAATCTCATCCTTCCGTGCACCGTCTTTATCTTCGTAGA
JMFF006L10+ CAGTCTGGCCTCCAAGAGCTGCAATCTCATCCTTCCGTGCACCGTCTTTATCTTCGTAGA
JMSF030K14+ CAGTCTGGCCTCCAAGAGCTGCAATCTCATCCTTCCGTGCACCGTCTTTATCTTCGTAGA
____________________________________________________________
consensus CAGTCTGGCCTCCAAGAGCTGCAATCTCATCCTTCCGTGCACCGTCTTTATCTTCGTAGA
. : . : . : . : . : . :
JMFF031I05+ TATCAACGATTTTGTGCGTGGTTTCGAGTATTTGCTCAATGACATTTCGAACGCGGTGGC
JMFF006L10+ TATCAACGATTTTGTGCGTGGTTTCGAGTATTTGCTCAATGACATTTCGAACGCGGTGGC
JMSF030K14+ TATCAACGATTTTGTGCGTGGTTTCGAGTATTTGCTCAATGACATTTCGAACGCGGTGGC
____________________________________________________________
consensus TATCAACGATTTTGTGCGTGGTTTCGAGTATTTGCTCAATGACATTTCGAACGCGGTGGC
. : . : . : . : . : . :
JMFF031I05+ TCTGGTGGAGGCGGTCCTTGTTGGTAGCCGGCTCGGCCTGGAGATCCTTCACGATGAGCC
JMFF006L10+ TCTGGTGGAGGCGGTCCTTGTTGGTAGCCGGCTCGGCCTGGAGATCCTTCACGATGAGCC
JMSF030K14+ TCTGGTGGAGGCGGTCCTTGTTGGTAGCCGGCTCGGCCTGGAGATCCTTCACGATGAGCC
JMSF017H24+ GGTGGAGGCGGTCCTTGTTGGTAGCCGGCTCGGCCTGGAGATCCTTCACGATGAGCC
____________________________________________________________
consensus TCTGGTGGAGGCGGTCCTTGTTGGTAGCCGGCTCGGCCTGGAGATCCTTCACGATGAGCC
. : . : . : . : . : . :
JMFF031I05+ GCTCGAGTCGTTCTATCTCCTCGTGCGACGCACGCGTCACCTCCAGTAGCGTCGACGACA
JMFF006L10+ GCTCGAGTCGTTCTATCTCCTCGTGCGACGCACGCGTCACCTCCAGTAGCGTCGACGACA
JMSF030K14+ GCTCGAGTCGTTCTATCTCCTCGTGCGACGCACGCGTCACCTCCAGTAGCGTCGACGACA
JMSF017H24+ GCTCGAGTCGTTCTATCTCCTCGTGCGACGCACGCGTCACCTCCAGTAGCGTCGACGACA
____________________________________________________________
consensus GCTCGAGTCGTTCTATCTCCTCGTGCGACGCACGCGTCACCTCCAGTAGCGTCGACGACA
. : . : . : . : . : . :
JMFF031I05+ TTCTTCTCCGTCTTTGTTTGGTCTTCTATCCGGTGGGGTACGGCCGACGGCGAGACCTGG
JMFF006L10+ TTCTTCTCCGTCTTTGTTTGGTCTTCTATCCGGTGGGGTACGGCCGACGGCGAGACCTGG
JMSF030K14+ TTCTTCTCCGTCTTTGTTTGGTCTTCTATCCGGTGGGGTACGGCCGACGGCGAGACCTGG
JMSF017H24+ TTCTTCTCCGTCTTTGTTTGGTCTTCTATCCGGTGGGGTACGGCCGACGGCGAGACCTGG
____________________________________________________________
consensus TTCTTCTCCGTCTTTGTTTGGTCTTCTATCCGGTGGGGTACGGCCGACGGCGAGACCTGG
. : . : . : . : . : . :
JMFF031I05+ CGGGACGATAGGGCTTCGAGCTATCGGTCTCCGTCTCACTCTCTTCTTCC
JMFF006L10+ CGGGACGATAGGGCTTCGAGCTATCGGTCTCCGTCTCACTCTCTTCTTCC
JMSF030K14+ CGGGACGATAGGGCTTCGAGCTATCGGTCTCCGTCTCACTCTCTTCTTCCGAAGTTCCCC
JMSF017H24+ CGGGACGATAGGGCTTCGAGCTATCGGTCTCCGTCTCACTCTCTTCTTCCGAAGTTCCCC
____________________________________________________________
consensus CGGGACGATAGGGCTTCGAGCTATCGGTCTCCGTCTCACTCTCTTCTTCCGAAGTTCCCC