Contig 000699:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF012H04-                                                               AAACAAT
rJMSF017B05-                                                 TTTGGATGAGGGAAAAACAAT
rJMSF038H14-                                GCCGTCCTAAATTTTCATTTGGATGAGGGAAAAACAAT
                      ____________________________________________________________
consensus                                   GCCGTCCTAAATTTTCATTTGGATGAGGGAAAAACAAT
 
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rJMSF012H04-          CAAAGGAAAACATTTTACAAAAATTCTCCAATATATTGGTAAATCACCTTTGCTAGCTTT
rJMSF017B05-          CAAAGGAAAACATTTTACAAAAATTCTCCAATATATTGGTAAATCACCTTTGCTAGCTTT
rJMSF038H14-          CAAAGGAAAACATTTTACAAAAATTCTCCAATATATTGGTAAATCACCTTTGCTAGCTTT
                      ____________________________________________________________
consensus             CAAAGGAAAACATTTTACAAAAATTCTCCAATATATTGGTAAATCACCTTTGCTAGCTTT
 
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rJMSF012H04-          AAAGTTTAAACCTATCACTAAACTCTACTCAAGTAATGTGAGTTAGGAAGCATGAGATGA
rJMSF017B05-          AAAGTTTAAACCTATCACTAAACTCTACTCAAGTAATGTGAGTTAGGAAGCATGAGATGA
rJMSF038H14-          AAAGTTTAAACCTATCACTAAACTCTACTCAAGTAATGTGAGTTAGGAAGCATGAGATGA
                      ____________________________________________________________
consensus             AAAGTTTAAACCTATCACTAAACTCTACTCAAGTAATGTGAGTTAGGAAGCATGAGATGA
 
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rJMSF012H04-          CTCGTCACTCGAATCTTCTGAATCTGAGCCATCAACCATCTTTTCCAGAGAATCCAAATC
rJMSF017B05-          CTCGTCACTCGAATCTTCTGAATCTGAGCCATCAACCATCTTTTCCAGAGAATCCAAATC
rJMSF038H14-          CTCGTCACTCGAATCTTCTGAATCTGAGCCATCAACCATCTTTTACAGAGAATCCAAATC
                      ____________________________________________________________
consensus             CTCGTCACTCGAATCTTCTGAATCTGAGCCATCAACCATCTTTTCCAGAGAATCCAAATC
 
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rJMSF012H04-          CCCGGCATCGGAGATAGTATGCAACCTAAGCTTTTCCGCATCCTCATCTGCTACCCCAAA
rJMSF017B05-          CCCGGCATCGGAGATAGTATGCAACCTAAGCTTTTCCGCATCCTCATCTGCTACCCCAAA
rJMSF038H14-          CCCGGCATCGGAGATAGTATGCAACCTAAGCTTTTCCGCATCCTCATCTGCTACCCCAAA
                      ____________________________________________________________
consensus             CCCGGCATCGGAGATAGTATGCAACCTAAGCTTTTCCGCATCCTCATCTGCTACCCCAAA
 
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rJMSF012H04-          TATTTCTTTAACTGTTAAAGAGCTATCCCTTGAACAAAACTCAGGCATCTCTGACAAATA
rJMSF017B05-          TATTTCTTTAACTGTTAAAGAGCTATCCCTTGAACAAAACTCAGGCATCTCTGACAAATA
rJMSF038H14-          TATTTCTTTAACTGTTAAAGAGCTATCCCTTGAACAAAACTCAGGCATCTCTGACAAATA
                      ____________________________________________________________
consensus             TATTTCTTTAACTGTTAAAGAGCTATCCCTTGAACAAAACTCAGGCATCTCTGACAAATA
 
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rJMSF012H04-          ATAAACCTTTCCAAAAAGTGCTTGCACCGCGAGTTTTCTCTTGAACCCCTTCTCAGAATA
rJMSF017B05-          ATAAACCTTTCCAAAAAGTGCTTGCACCGCGAGTTTTCTCTTGAACCCCTTCTCAGAATA
rJMSF038H14-          ATAAACCTTTCCAAAAAGTGCTTGCACCGCGAGTTTTCTCTTGAACCCCTTCTCAGAATA
                      ____________________________________________________________
consensus             ATAAACCTTTCCAAAAAGTGCTTGCACCGCGAGTTTTCTCTTGAACCCCTTCTCAGAATA
 
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rJMSF012H04-          CCCTGACATGTCCATGACAACAGGACCTTTATCTTTAACAATACGACTTGAGATCTCATT
rJMSF017B05-          CCCTGACATGTCCATGACAACAGGACCTTTATCTTTAACAATACGACTTGAGATCTCATT
rJMSF038H14-          CCCTGACATGTCCATGACAACAGGACCTTTATCTTTAACAATACGACTTGAGATCTCATT
                      ____________________________________________________________
consensus             CCCTGACATGTCCATGACAACAGGACCTTTATCTTTAACAATACGACTTGAGATCTCATT
 
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rJMSF012H04-          AAGGATTTCAGCTACTTGAGAATCACTTAAAAGTGAGGCCTTCCTGAGTTGAATCAAATC
rJMSF017B05-          AAGGATTTCAGCTACTTGAGAATCACTTAAAAGTGAGGCCTTCCTGAGTTGAATCAAATC
rJMSF038H14-          AAGGATTTCAGCTACTTGAGAATCACTTAAAAGTGAGGCCTTCCTGAGTTGAATCAAATC
                      ____________________________________________________________
consensus             AAGGATTTCAGCTACTTGAGAATCACTTAAAAGTGAGGCCTTCCTGAGTTGAATCAAATC
 
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rJMSF012H04-          AGCTACCAAATCAGGGTTAAACGGTTTCTCATTCAAGGCATATCGAATATATTTGCGCAA
rJMSF017B05-          AGCTACCAAATCAGGGTTAAACGGTTTCTCATTCAAGGCATATCGAATATATTTGCGCAA
rJMSF038H14-          AGCTACCAAATCAGGGTTAAACGGTTTCTCATTCAAGGCATATCGAATATATTTGCGCAA
                      ____________________________________________________________
consensus             AGCTACCAAATCAGGGTTAAACGGTTTCTCATTCAAGGCATATCGAATATATTTGCGCAA
 
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rJMSF012H04-          AATATCCTCCATTTCAAAATTTGTCTTTTTCATCAGGTCCTTCAACTCTGACTCATCAAC
rJMSF017B05-          AATATCCTCCATTTCAAAATTTGTCTTTTTCATCAGGTCCTTCAACTCTGACTCATCAAC
rJMSF038H14-          AATATCCTCCATTTCAAAATTTGTCTTTTTCATCAGGTCCTTCAACTCTGACTCATCAAC
                      ____________________________________________________________
consensus             AATATCCTCCATTTCAAAATTTGTCTTTTTCATCAGGTCCTTCAACTCTGACTCATCAAC
 
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rJMSF012H04-          ACTTTGCCGTCCTTTCTCAAAGAGCTCATCAATTGATGTACACAGGAAAGCATTTTTATT
rJMSF017B05-          ACTTTGCCGTCCTTTCTCAAAGAGCTCATCAATTGATGTACACAGGAAAGCATTTTTATT
rJMSF038H14-          ACTTTGCCGTCCTTTCTCAAAGAGCTCATCAATTGATGTACACAGGAAAGCATTTTTATT
                      ____________________________________________________________
consensus             ACTTTGCCGTCCTTTCTCAAAGAGCTCATCAATTGATGTACACAGGAAAGCATTTTTATT
 
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rJMSF012H04-          GACCAATTTTCGACGCTTTGCTCTAGGGGAATTGAACTTCCGGACGGTCTTAACGAAGGC
rJMSF017B05-          GACCAATTTTCGACGCTTTGCTCTAGGGGAATTGAACTTCCGGACGGTCTTAACGAAGGC
rJMSF038H14-          GACCAATTTTCGACGCTTTGCTCTAGGGGAATTGAACTTCCGGACGGTCTTAACGAAGGC
JMSF038H14+                              GCTCTAGGGGAATTGAACTTCCGGACGGTCTTAACGAAGGC
                      ____________________________________________________________
consensus             GACCAATTTTCGACGCTTTGCTCTAGGGGAATTGAACTTCCGGACGGTCTTAACGAAGGC
 
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rJMSF012H04-          AATAACAAATGTGATA                                            
rJMSF017B05-          AATAACAAATGTGATACCNAAAATAAGCCAAGGGCACGGCGAGAA               
rJMSF038H14-          AATAACAAATGTGATACC-AAAATAAGCCAAGGGCACGGCGAGAATCCATGGCAAGGAGC
JMSF038H14+           AATAACAAATGTGATACC-AAAATAAGCCAAGGGCACGGCGAGAATCCATGGCAAGGAGC
                      ____________________________________________________________
consensus             AATAACAAATGTGATACC-AAAATAAGCCAAGGGCACGGCGAGAATCCATGGCAAGGAGC
 
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rJMSF038H14-          TCCCACCGACACGAGGCCCAGGAATTGCCTGAGTGACGGAGCCCGTGAATTCAACGAGGT
JMSF038H14+           TCCCACCGACACGAGGCCCAGGAATTGCCTGAGTGACGGAGCCCGTGAATTCAACGAGGT
                      ____________________________________________________________
consensus             TCCCACCGACACGAGGCCCAGGAATTGCCTGAGTGACGGAGCCCGTGAATTCAACGAGGT
 
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rJMSF038H14-          CCAATGCCTTTTCCTGTATCCACGGTAGTTCTTCCTCCACC                   
JMSF038H14+           CCAATGCCTTTTCCTGTATCCACGGTAGTTCTTCCTCCACCTCTCCTACTTCTTCTTCTT
JMSF017H15+                            ATCCACGGTAGTTCTTCCTCCACCTCTTCTACTTCTTCTTCTT
                      ____________________________________________________________
consensus             CCAATGCCTTTTCCTGTATCCACGGTAGTTCTTCCTCCACCTCTTCTACTTCTTCTTCTT
 
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JMSF017B05+                                                           CGCCGCCGTTTC
JMSF038H14+           CTTCTTCTTCTCCTTGTTTCTCTTGTTTCTTCTCACTATTATCGCCGCCGCCGCCGTTTC
JMSF008D20+                                                                      C
JMSF017H15+           CTTCTTCTTCTCCTTGTTTCTCTTGTTTCTTCTCACTATNATCGCCGCCGCCGCCGTTTC
                      ____________________________________________________________
consensus             CTTCTTCTTCTCCTTGTTTCTCTTGTTTCTTCTCACTATTATCGCCGCCGCCGCCGTTTC
 
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JMSF017B05+           TCGTAGCGGCCGCCGCTCGGGCGAAGGCCGATGAGCGGCCTGTGGAAGGTAAGGGGAAGA
JMSF038H14+           TCGTAGCGGCCGCCGCTCGGGCGAAGGCCGATGAGCGGCCTGTGGAAGGTAAGGGGAAGA
JMSF008D20+           TCGTAGCGGCCGCCGCTCGGGCGAAGGCCGATGAGCGGCCTGTGGAAGGTAAGGGGAAGA
JMSF017H15+           TCGTAGCGGCCGCCGCTCGGGCGAAGGCCGATGAGCGGCCTGTGGAAGGTAAGGGGAAGA
                      ____________________________________________________________
consensus             TCGTAGCGGCCGCCGCTCGGGCGAAGGCCGATGAGCGGCCTGTGGAAGGTAAGGGGAAGA
 
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JMSF017B05+           AAATATGATTGAATTTGCAGCTGTTTAAGTGTGGTATTTTCAATTTTGGGAAATGGGAAG
JMSF038H14+           AAATATGATTGAATTTGCAGCTGTTTAAGTGTGGTATTTTCAATTTTGGGAAATGGGAAG
JMSF008D20+           AAATATGATTGAATTTGCAGCTGTTTAAGTGTGGTATTTTCAATTTTGGGAAATGGGAAG
JMSF012H04+                                                       TTTGGGAAATGGGAAG
JMSF017H15+           AAATATGATTGAATTNGCAGCTGTTTAAGTGTGGTATTTTCAATTTTGGGAAATGGGAAG
                      ____________________________________________________________
consensus             AAATATGATTGAATTTGCAGCTGTTTAAGTGTGGTATTTTCAATTTTGGGAAATGGGAAG
 
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JMSF017B05+           GTCTCTTGATGACGGAAGCGGCGGCGGCGGCGGCAGGAGGAGATAGACTGGGTAGGCATT
JMSF038H14+           GTCTCTTGATGACGGAAGCGGCGGCGGCGGCGGCAGGAGGAGATAGACTGGGTAGGCATT
JMSF008D20+           GTCTCTTGATGACGGAAGCGGCGGCGGCGGCGGCAGGAGGAGATAGACTGGGTAGGCATT
JMSF012H04+           GTCTCTTGATGACGGAAGCGGCGGCGGCGGCGGCAGGAGGAGATAGACTGGGTAGGCATT
JMSF017H15+           GTCTCTTGATGACGGAAGCGGCGGCGGCGGCGGCAGGAGGAGATAGACTGGGTAGGCATT
                      ____________________________________________________________
consensus             GTCTCTTGATGACGGAAGCGGCGGCGGCGGCGGCAGGAGGAGATAGACTGGGTAGGCATT
 
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JMSF017B05+           GGGAATTACGAACGAGAGAACAGTTGTAAACGCTAGTACAAGAAGAAGACGCCATTGCAG
JMSF038H14+           GGGAATTACGAACGAGAGAACAGTTGTAAACGCTAGTACAAGAAGAAGACGCCATTGCAG
JMSF008D20+           GGGAATTACGAACGAGAGAACAGTTGTAAACGCTAGTACAAGAAGAAGACGCCATTGCAG
JMSF012H04+           GGGAATTACGAACGAGAGAACAGTTGTAAACGCTAGTACAAGAAGAAGACGCCATTGCAG
JMSF017H15+           GGGAATTACGAACGAGAGAACAGTTGTAAACGCTAGTACAAGAAGAAGACGCCATTGCAG
                      ____________________________________________________________
consensus             GGGAATTACGAACGAGAGAACAGTTGTAAACGCTAGTACAAGAAGAAGACGCCATTGCAG
 
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JMSF017B05+           AGAAGGGAAGCAGCTCTTTGAGATTAATGTTTAAGCGGCGGCGAATGTATTTGCGGCAGC
JMSF038H14+           AGAAGGGAAGCAGCTCTTTGAGATTAATGTTTAAGCGGCGGCGAATGTATTTGCGGCAGC
JMSF008D20+           AGAAGGGAAGCAGCTCTTTGAGATTAATGTTTAAGCGGCGGCGAATGTATTTGCGGCAGC
JMSF012H04+           AGAAGGGAAGCAGCTCTTTGAGATTAATGTTTAAGCGGCGGCGAATGTATTTGCGGCAGC
JMSF017H15+           AGAAGGGAAGCAGCTCTTTGAGATTAATGTTTAAGCGGCGGCGAATGTATTTGCGGCAGC
                      ____________________________________________________________
consensus             AGAAGGGAAGCAGCTCTTTGAGATTAATGTTTAAGCGGCGGCGAATGTATTTGCGGCAGC
 
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JMSF017B05+           AAAGCAGGCCGGCGAGAATCAATCTGGGCTCTAGTTTTCTGGGACGTTTGCTATCCT   
JMSF038H14+           AAAGCAGGCCGGCGAGAATCAATCTGGGCTCTAGTTTTCTGGGACGTTTGCTATCCTT  
JMSF008D20+           AAAGCAGGCCGGGGAGAATCAATCTGGGCTCTAGTTTTCTGGGACGTTTGCTATCCTT  
JMSF012H04+           AAAGCAGGCCGGCGAGAATCAATCTGGGCTCTAGTTTTCTGGGACGTTTGCTATCCTT  
JMSF017H15+           AAAGCAGGCCGGGGAGAATCAATCTGGGCTCTAGTTTTCTGGGACGTTTGCTATCCTTCC
                      ____________________________________________________________
consensus             AAAGCAGGCCGGCGAGAATCAATCTGGGCTCTAGTTTTCTGGGACGTTTGCTATCCTTCC