| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF015G13 | Sequence | 635 | 000680 (7) | ref|XP_009785778.1| | 3e-99 | PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Nicotiana sylve | 700 | 000680 (7) | gb|KHG20623.1| | 3e-96 | DNA-directed RNA polymerase II subunit RPB3-A -like protein [Gossypium arboreum |
| JMFF037A08 | Sequence | 472 | 000680 (7) | ref|XP_009785778.1| | 4e-67 | PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Nicotiana sylve | 687 | 000680 (7) | ref|XP_009785778.1| | 2e-120 | PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Nicotiana sylve |
| JMSF002K21 | Sequence | 313 | 000680 (7) | ref|XP_009785778.1| | 6e-50 | PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Nicotiana sylve | 664 | 011236 (72) | |||
| JMSF015F14 | Sequence | 495 | 000680 (7) | ref|XP_009785778.1| | 6e-91 | PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Nicotiana sylve | 734 | 000680 (7) | ref|XP_009785778.1| | 2e-111 | PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Nicotiana sylve |
This contig is upended
. : . : . : . : . : . :
rJMFF015G13- GTGTTTTGTCCATTTCCTTGAGAAACAAG
____________________________________________________________
consensus GTGTTTTGTCCATTTCCTTGAGAAACAAG
. : . : . : . : . : . :
rJMFF015G13- AATATGCACTGGCAAAACAAACACACTTTGGTCACCAGTTTCATGATTAAATCTAAAGCA
rJMSF015F14- CTTTGGTCACCAGTTTCATGATTAAATCTAAAGCA
____________________________________________________________
consensus AATATGCACTGGCAAAACAAACACACTTTGGTCACCAGTTTCATGATTAAATCTAAAGCA
. : . : . : . : . : . :
rJMFF015G13- CAGGTAGAGAAGAAGGACAAGTTATTAGTCTAACATCCAACATACTACACTCATAAGAAA
rJMSF015F14- CAGGTAGAGAAGAAGGACAAGTTATTAGTCTAACATCCAACATACTACACTCATAAGAAA
rJMFF037A08- TCATAAGAAA
____________________________________________________________
consensus CAGGTAGAGAAGAAGGACAAGTTATTAGTCTAACATCCAACATACTACACTCATAAGAAA
. : . : . : . : . : . :
rJMFF015G13- TAGAAAAGTTAAGGTCAACTGTCATAACAAAGTACAGAGCACAGGAGTTGATCAGGCTCG
rJMSF015F14- TAGAAAAGTTAAGGTCAACTGTCATAACAAAGTACAGAGCACAGGAGTTGATCAGGCTCG
rJMFF037A08- TAGAAAAGTTAAGGTCAACTGTCATAACAAAGTACAGAGCACAGGAGTTGATCAGGCTCG
____________________________________________________________
consensus TAGAAAAGTTAAGGTCAACTGTCATAACAAAGTACAGAGCACAGGAGTTGATCAGGCTCG
. : . : . : . : . : . :
rJMFF015G13- GGTTGCAATTAACCCCCTCGCATGTGTGCACCCAACTCTCCAAATTGGTCATCTGCTTCC
rJMSF015F14- GGTTGCAATTAACCCCCTCGCATGTGTGCACCCAACTCTCCAAATTGGTCATCTGCTTCC
rJMFF037A08- GGTTGCAATTAACCCCCTCGCATGTGTGCACCCAACTCTCCAAATTGGTCATCTGCTTCC
____________________________________________________________
consensus GGTTGCAATTAACCCCCTCGCATGTGTGCACCCAACTCTCCAAATTGGTCATCTGCTTCC
. : . : . : . : . : . :
rJMFF015G13- ACCGTATCCTCTGACAGGCGCACTGCGTCTAACTTCCGCTTCAAAACATCGATTGCATTG
rJMSF015F14- ACCGTATCCTCTGACAGGCGCACTGCGTCTAACTTCCGCTTCAAAACATCGATTGCATTG
rJMFF037A08- ACCGTATCCTCTGACAGGCGCACTGCGTCTAACTTCCGCTTCAAAACATCGATTGCATTG
____________________________________________________________
consensus ACCGTATCCTCTGACAGGCGCACTGCGTCTAACTTCCGCTTCAAAACATCGATTGCATTG
. : . : . : . : . : . :
rJMFF015G13- AGGAAAAGCTGAGAAGCTTTGATTGCACCCGTGGATTCGACTGTGAAGATGAAGCTATCT
rJMSF015F14- AGGAAGAGCTGAGAAGCTTTGATTGCACCCGTGGATTCGACTGTGAAGATGAAGCTATCT
rJMFF037A08- AGGAAGAGCTGAGAAGCTTTGATTGCACCCGTGGATTCGACTGTGAAGATGAAGCTATCT
____________________________________________________________
consensus AGGAAGAGCTGAGAAGCTTTGATTGCACCCGTGGATTCGACTGTGAAGATGAAGCTATCT
. : . : . : . : . : . :
rJMFF015G13- TCCTTGGCATGGATTTCTATAAGCCCGGGTTTGTCCATAGACGCAATTTTCTTGAGCACC
rJMSF015F14- TCCTTGGCATGGATTTCTATAAGCCCGGGTTTGTCCATAGACGCAATTTTCTTGAGCACC
rJMFF037A08- TCCTTGGCATGGATTTCTATAAGCCCGGGTTTGTCCATAGACGCAATTTTCTTGAGCACC
____________________________________________________________
consensus TCCTTGGCATGGATTTCTATAAGCCCGGGTTTGTCCATAGACGCAATTTTCTTGAGCACC
. : . : . : . : . : . :
rJMFF015G13- TCATCGTCGTAGGTGTATGCCTCAGCATCAACCACAACAATCTGTTGGGTAACAGGGTCG
rJMSF015F14- TCATCGTCGTAGGTGTATGCCTCAGCATCAACCACAACAATCTGTTGGGTAACAGGGTCG
rJMFF037A08- TCATCGTCGTAGGTGTATGCCTCAGCATCAACCACAACAATCTGTTGGGTAACAGGGTCG
____________________________________________________________
consensus TCATCGTCGTAGGTGTATGCCTCAGCATCAACCACAACAATCTGTTGGGTAACAGGGTCG
. : . : . : . : . : . :
rJMFF015G13- ATGTCAAACACTTTGGTGGGACTGCTGTCAACAATACTTCTTTTTTCCTCAAGTGTCAAT
rJMSF015F14- ATGTCAAACACTTTGGTGGGACTGCTGTCAACAATACTTCTTTTTTCCTCAAGTGTCAAT
rJMFF037A08- ATGTCAAACACTTTGGTGGGACTGCTGTCAACAATACTTCTTTTTTCCTCAAGTGTCAAT
____________________________________________________________
consensus ATGTCAAACACTTTGGTGGGACTGCTGTCAACAATACTTCTTTTTTCCTCAAGTGTCAAT
. : . : . : . : . : . :
rJMFF015G13- GTGTCCATCATGTCTTCATTGATATAGATTTCTGGCTCATACATAAATGTCACAGTTGCT
rJMSF015F14- GTGTCCATCATGTCTTCATTGATATAGATTTCTGGCTCATACATAAATGTCACAGTTGCT
rJMFF037A08- GTGTCCATCATGTCTTCATTGATATAGATTTCTGGCTCATACATAAATGTCACAGTTGCT
JMFF015G13+ ATTGATATAGATTTCTGGCTCATACATAAATGTCACAGTTGCT
____________________________________________________________
consensus GTGTCCATCATGTCTTCATTGATATAGATTTCTGGCTCATACATAAATGTCACAGTTGCT
. : . : . : . : . : . :
rJMFF015G13- GCAGGTGACCACTTTGCATGATCCTTGCCAATTCCTTTCCGTGCAATTGCTCTGAGCCTC
rJMSF015F14- GCAGGTGACCACTTTGCATGATCCTTGCCAATTCCTTTCCGTGCAATTGCTCTGAGCCTC
rJMFF037A08- GCAGGTGACCACTTTGCATGATCCTTGCCAATTCCTTTCCGTGCAATTGCTCTGAGCCTC
JMFF015G13+ GCAGGTGACCACTTTGCATGATCCTTGCCAATTCCTTTCCGTGCAATTGCTCTGAGCCTC
____________________________________________________________
consensus GCAGGTGACCACTTTGCATGATCCTTGCCAATTCCTTTCCGTGCAATTGCTCTGAGCCTC
. : . : . : . : . : . :
rJMFF015G13- AACTCTTGTCC
rJMSF015F14- AACTCTTGTCCACGGCGTAGCTTAACAATAATTATCCCCTTAGACTCGGAATTACCGAAG
rJMFF037A08- AACTCTTGTCCACGGCGTAGCTTAACAATAATTATCCCCTTAGACTCGGAATTACCGAAG
JMFF015G13+ AACTCTTGTCCACGGCGTAGCTTAACAATAATTATCCCCTTAGACTCGGAATTACCGAAG
JMSF015F14+ CTCGGAATTACCGAAG
____________________________________________________________
consensus AACTCTTGTCCACGGCGTAGCTTAACAATAATTATCCCCTTAGACTCGGAATTACCGAAG
. : . : . : . : . : . :
rJMSF015F14- CCGGACGAAGGATCAGAGTAATCGACGGGAACGACGGTG
rJMFF037A08- CCGGACGAANGATCAGAGTAATCGACGGGAACGACGGTGTGGTCGGAGCTGAAGAGGTCC
JMFF015G13+ CCGGACGAAGGATCAGAGTAATCGACGGGAACGACGGTGTGGTCGGAGCTGAGGAGGTCC
JMFF037A08+ CCGGACGAAGGATCAGAGTAATCGACGGGAACGACGGTGTGGTCGGAGCTGAGGAGGTCC
JMSF015F14+ CCGGACGAAGGATCAGAGTAATCGACGGGAACGACGGTGTGGGCGGAGCTGAGGAGGTCC
____________________________________________________________
consensus CCGGACGAAGGATCAGAGTAATCGACGGGAACGACGGTGTGGTCGGAGCTGAGGAGGTCC
. : . : . : . : . : . :
rJMFF037A08- TTGCTGGTGACATCTA
JMFF015G13+ TTGCTGGTGACATCTAGGGTTTGGTCAGTGATGCACTTGACGCGGAGGTAGAACTCGACG
JMFF037A08+ TTGCTGGTGACATCTAGGGTTTGGTCAGTGATGCACTTGACGCGGAGGTAGAACTCGACG
JMSF015F14+ TTGCTGGTGACATCTAGGGTTTGGTCAGTGATGCACTTGACGCGGAGGTAGAACTCGACG
____________________________________________________________
consensus TTGCTGGTGACATCTAGGGTTTGGTCAGTGATGCACTTGACGCGGAGGTAGAACTCGACG
. : . : . : . : . : . :
JMFF015G13+ GAGCAATACTCGCACTGGCCGTCGCCGTACGCAGGCGTCGCAGTCACGCGAGAAGCGCAT
JMFF037A08+ GAGCAATACTCGCACTGGCCGTCGCCGTACGCAGGCGTCGCAGTCACGCGAGAAGCGCAT
JMSF002K21+ ACGCGAGAAGCGCAT
JMSF015F14+ GAGCAATACTCGCACTGGCCGTCGCCGT-CGCAGGCGTCGCAGTCACGCGAGAAGCGCAT
____________________________________________________________
consensus GAGCAATACTCGCACTGGCCGTCGCCGTACGCAGGCGTCGCAGTCACGCGAGAAGCGCAT
. : . : . : . : . : . :
JMFF015G13+ GCTCATAGCGCGCTCGCTGGTGAGGGGGATGAGGCCGAGGCGGTGGGCGATGAACTCGTC
JMFF037A08+ GCTCATAGCGCGCTCGCTGGTGAGGGGGATGAGGCCGAGGCGGTGGGCGATGAACTCGTC
JMSF002K21+ GCTCATAGCGCGCTCGCTGGTGAGGGGGATGAGGCCGAGGCGGTGGGCGATGAACTCGTC
JMSF015F14+ GCTCATAGCGCGCTCGCTGGTGAGGGGGATGAGGCCGAGGCGGTGGGCGATGAACTCGTC
____________________________________________________________
consensus GCTCATAGCGCGCTCGCTGGTGAGGGGGATGAGGCCGAGGCGGTGGGCGATGAACTCGTC
. : . : . : . : . : . :
JMFF015G13+ GTTGAGGACGGTGGAGTTGCACTCGATTTCGACGAGGTCGATGGCGATGGTGGGCACCTC
JMFF037A08+ GTTGAGGACGGTGGAGTTGCACTCGATTTCGACGAGGTCGATGGCGATGGTGGGCACCTC
JMSF002K21+ GTTGAGGACGGTGGAGTTGCACTCGATTTCGACGAGGTCGATGGCGATGGTGGGCACCTC
JMSF015F14+ GTTGAGGACGGTGGAGTTGCACTCGATTTCGACGAGGTCGATGGCGATGGTGGGCACCTC
____________________________________________________________
consensus GTTGAGGACGGTGGAGTTGCACTCGATTTCGACGAGGTCGATGGCGATGGTGGGCACCTC
. : . : . : . : . : . :
JMFF015G13+ GGCGATCATCACGCGCCGAAGCGCGTTGGCCACGCTAGCGTCGGTGTCGCGAAGCTCAAA
JMFF037A08+ GGCGATCATCACGCGCCGAAGCGCGTTGGCCACGCTAGCGTCGGTGTCGCGAAGCTCAAA
JMSF002K21+ GGCGATCATCACGCGCCGAAGCGCGTTGGCCACGCTAGCGTCGGTGTCGCGAAGCTCAAA
JMSF015F14+ GGCGATCATCACGCGCCGAAGCGCGTNGGCCACGCTAGCGTCGGTGTCGCGAAGCTCAAA
____________________________________________________________
consensus GGCGATCATCACGCGCCGAAGCGCGTTGGCCACGCTAGCGTCGGTGTCGCGAAGCTCAAA
. : . : . : . : . : . :
JMFF015G13+ CTTCATGTAGTCGTCCTTCACTTCCCGGATTTTTATCTTTGGGAACCTCTGGTACGATGC
JMFF037A08+ CTTCATGTAGTCGTCCTTCACTTCCCGGATTTTTATCTTTGGGAACCTCTGGTACGATGC
JMSF002K21+ CTTCATGTAGTCGTCCTTCACTTCCCGGATTTTTATCTTTGGGAACCTCTGGTACGATGC
JMSF015F14+ CTTCANGTAGTCGTCNTTCACTTCCCGGATTTTTATCTTTGGGAACCTCTGGTACGATGC
____________________________________________________________
consensus CTTCATGTAGTCGTCCTTCACTTCCCGGATTTTTATCTTTGGGAACCTCTGGTACGATGC
. : . : . : . : . : . :
JMFF015G13+ ACCCTCCATTGTTGTCTTCCTCGTTCCTCTCTCACTTCTCAGCAAATACTCT
JMFF037A08+ ACCCTCCATTGTTGTCTTCCTCGTTCCTCTCTCACTTCTCAGCAAATACTCT
JMSF002K21+ ACCCTCCATTGTTGTCTTCCTCGTTCCTCTCTCACTTCTCAGCAAATACTCT
JMSF015F14+ ACCCTCCATTGTTGTNTTCCTCGTTCCTCTCTCACTTCTCAGCAAATACTCTAAAACCCC
____________________________________________________________
consensus ACCCTCCATTGTTGTCTTCCTCGTTCCTCTCTCACTTCTCAGCAAATACTCTAAAACCCC