Contig 000680:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015G13Sequence635000680 (7)ref|XP_009785778.1|3e-99PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Nicotiana sylve700000680 (7)gb|KHG20623.1|3e-96DNA-directed RNA polymerase II subunit RPB3-A -like protein [Gossypium arboreum
JMFF037A08Sequence472000680 (7)ref|XP_009785778.1|4e-67PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Nicotiana sylve687000680 (7)ref|XP_009785778.1|2e-120PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Nicotiana sylve
JMSF002K21Sequence313000680 (7)ref|XP_009785778.1|6e-50PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Nicotiana sylve664011236 (72)
JMSF015F14Sequence495000680 (7)ref|XP_009785778.1|6e-91PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Nicotiana sylve734000680 (7)ref|XP_009785778.1|2e-111PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Nicotiana sylve

Alignment

This contig is upended


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rJMFF015G13- GTGTTTTGTCCATTTCCTTGAGAAACAAG
                      ____________________________________________________________
consensus GTGTTTTGTCCATTTCCTTGAGAAACAAG
 
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rJMFF015G13- AATATGCACTGGCAAAACAAACACACTTTGGTCACCAGTTTCATGATTAAATCTAAAGCA
rJMSF015F14- CTTTGGTCACCAGTTTCATGATTAAATCTAAAGCA
                      ____________________________________________________________
consensus AATATGCACTGGCAAAACAAACACACTTTGGTCACCAGTTTCATGATTAAATCTAAAGCA
 
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rJMFF015G13- CAGGTAGAGAAGAAGGACAAGTTATTAGTCTAACATCCAACATACTACACTCATAAGAAA
rJMSF015F14- CAGGTAGAGAAGAAGGACAAGTTATTAGTCTAACATCCAACATACTACACTCATAAGAAA
rJMFF037A08- TCATAAGAAA
                      ____________________________________________________________
consensus CAGGTAGAGAAGAAGGACAAGTTATTAGTCTAACATCCAACATACTACACTCATAAGAAA
 
. : . : . : . : . : . :
rJMFF015G13- TAGAAAAGTTAAGGTCAACTGTCATAACAAAGTACAGAGCACAGGAGTTGATCAGGCTCG
rJMSF015F14- TAGAAAAGTTAAGGTCAACTGTCATAACAAAGTACAGAGCACAGGAGTTGATCAGGCTCG
rJMFF037A08- TAGAAAAGTTAAGGTCAACTGTCATAACAAAGTACAGAGCACAGGAGTTGATCAGGCTCG
                      ____________________________________________________________
consensus TAGAAAAGTTAAGGTCAACTGTCATAACAAAGTACAGAGCACAGGAGTTGATCAGGCTCG
 
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rJMFF015G13- GGTTGCAATTAACCCCCTCGCATGTGTGCACCCAACTCTCCAAATTGGTCATCTGCTTCC
rJMSF015F14- GGTTGCAATTAACCCCCTCGCATGTGTGCACCCAACTCTCCAAATTGGTCATCTGCTTCC
rJMFF037A08- GGTTGCAATTAACCCCCTCGCATGTGTGCACCCAACTCTCCAAATTGGTCATCTGCTTCC
                      ____________________________________________________________
consensus GGTTGCAATTAACCCCCTCGCATGTGTGCACCCAACTCTCCAAATTGGTCATCTGCTTCC
 
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rJMFF015G13- ACCGTATCCTCTGACAGGCGCACTGCGTCTAACTTCCGCTTCAAAACATCGATTGCATTG
rJMSF015F14- ACCGTATCCTCTGACAGGCGCACTGCGTCTAACTTCCGCTTCAAAACATCGATTGCATTG
rJMFF037A08- ACCGTATCCTCTGACAGGCGCACTGCGTCTAACTTCCGCTTCAAAACATCGATTGCATTG
                      ____________________________________________________________
consensus ACCGTATCCTCTGACAGGCGCACTGCGTCTAACTTCCGCTTCAAAACATCGATTGCATTG
 
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rJMFF015G13- AGGAAAAGCTGAGAAGCTTTGATTGCACCCGTGGATTCGACTGTGAAGATGAAGCTATCT
rJMSF015F14- AGGAAGAGCTGAGAAGCTTTGATTGCACCCGTGGATTCGACTGTGAAGATGAAGCTATCT
rJMFF037A08- AGGAAGAGCTGAGAAGCTTTGATTGCACCCGTGGATTCGACTGTGAAGATGAAGCTATCT
                      ____________________________________________________________
consensus AGGAAGAGCTGAGAAGCTTTGATTGCACCCGTGGATTCGACTGTGAAGATGAAGCTATCT
 
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rJMFF015G13- TCCTTGGCATGGATTTCTATAAGCCCGGGTTTGTCCATAGACGCAATTTTCTTGAGCACC
rJMSF015F14- TCCTTGGCATGGATTTCTATAAGCCCGGGTTTGTCCATAGACGCAATTTTCTTGAGCACC
rJMFF037A08- TCCTTGGCATGGATTTCTATAAGCCCGGGTTTGTCCATAGACGCAATTTTCTTGAGCACC
                      ____________________________________________________________
consensus TCCTTGGCATGGATTTCTATAAGCCCGGGTTTGTCCATAGACGCAATTTTCTTGAGCACC
 
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rJMFF015G13- TCATCGTCGTAGGTGTATGCCTCAGCATCAACCACAACAATCTGTTGGGTAACAGGGTCG
rJMSF015F14- TCATCGTCGTAGGTGTATGCCTCAGCATCAACCACAACAATCTGTTGGGTAACAGGGTCG
rJMFF037A08- TCATCGTCGTAGGTGTATGCCTCAGCATCAACCACAACAATCTGTTGGGTAACAGGGTCG
                      ____________________________________________________________
consensus TCATCGTCGTAGGTGTATGCCTCAGCATCAACCACAACAATCTGTTGGGTAACAGGGTCG
 
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rJMFF015G13- ATGTCAAACACTTTGGTGGGACTGCTGTCAACAATACTTCTTTTTTCCTCAAGTGTCAAT
rJMSF015F14- ATGTCAAACACTTTGGTGGGACTGCTGTCAACAATACTTCTTTTTTCCTCAAGTGTCAAT
rJMFF037A08- ATGTCAAACACTTTGGTGGGACTGCTGTCAACAATACTTCTTTTTTCCTCAAGTGTCAAT
                      ____________________________________________________________
consensus ATGTCAAACACTTTGGTGGGACTGCTGTCAACAATACTTCTTTTTTCCTCAAGTGTCAAT
 
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rJMFF015G13- GTGTCCATCATGTCTTCATTGATATAGATTTCTGGCTCATACATAAATGTCACAGTTGCT
rJMSF015F14- GTGTCCATCATGTCTTCATTGATATAGATTTCTGGCTCATACATAAATGTCACAGTTGCT
rJMFF037A08- GTGTCCATCATGTCTTCATTGATATAGATTTCTGGCTCATACATAAATGTCACAGTTGCT
JMFF015G13+ ATTGATATAGATTTCTGGCTCATACATAAATGTCACAGTTGCT
                      ____________________________________________________________
consensus GTGTCCATCATGTCTTCATTGATATAGATTTCTGGCTCATACATAAATGTCACAGTTGCT
 
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rJMFF015G13- GCAGGTGACCACTTTGCATGATCCTTGCCAATTCCTTTCCGTGCAATTGCTCTGAGCCTC
rJMSF015F14- GCAGGTGACCACTTTGCATGATCCTTGCCAATTCCTTTCCGTGCAATTGCTCTGAGCCTC
rJMFF037A08- GCAGGTGACCACTTTGCATGATCCTTGCCAATTCCTTTCCGTGCAATTGCTCTGAGCCTC
JMFF015G13+ GCAGGTGACCACTTTGCATGATCCTTGCCAATTCCTTTCCGTGCAATTGCTCTGAGCCTC
                      ____________________________________________________________
consensus GCAGGTGACCACTTTGCATGATCCTTGCCAATTCCTTTCCGTGCAATTGCTCTGAGCCTC
 
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rJMFF015G13- AACTCTTGTCC
rJMSF015F14- AACTCTTGTCCACGGCGTAGCTTAACAATAATTATCCCCTTAGACTCGGAATTACCGAAG
rJMFF037A08- AACTCTTGTCCACGGCGTAGCTTAACAATAATTATCCCCTTAGACTCGGAATTACCGAAG
JMFF015G13+ AACTCTTGTCCACGGCGTAGCTTAACAATAATTATCCCCTTAGACTCGGAATTACCGAAG
JMSF015F14+ CTCGGAATTACCGAAG
                      ____________________________________________________________
consensus AACTCTTGTCCACGGCGTAGCTTAACAATAATTATCCCCTTAGACTCGGAATTACCGAAG
 
. : . : . : . : . : . :
rJMSF015F14- CCGGACGAAGGATCAGAGTAATCGACGGGAACGACGGTG
rJMFF037A08- CCGGACGAANGATCAGAGTAATCGACGGGAACGACGGTGTGGTCGGAGCTGAAGAGGTCC
JMFF015G13+ CCGGACGAAGGATCAGAGTAATCGACGGGAACGACGGTGTGGTCGGAGCTGAGGAGGTCC
JMFF037A08+ CCGGACGAAGGATCAGAGTAATCGACGGGAACGACGGTGTGGTCGGAGCTGAGGAGGTCC
JMSF015F14+ CCGGACGAAGGATCAGAGTAATCGACGGGAACGACGGTGTGGGCGGAGCTGAGGAGGTCC
                      ____________________________________________________________
consensus CCGGACGAAGGATCAGAGTAATCGACGGGAACGACGGTGTGGTCGGAGCTGAGGAGGTCC
 
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rJMFF037A08- TTGCTGGTGACATCTA
JMFF015G13+ TTGCTGGTGACATCTAGGGTTTGGTCAGTGATGCACTTGACGCGGAGGTAGAACTCGACG
JMFF037A08+ TTGCTGGTGACATCTAGGGTTTGGTCAGTGATGCACTTGACGCGGAGGTAGAACTCGACG
JMSF015F14+ TTGCTGGTGACATCTAGGGTTTGGTCAGTGATGCACTTGACGCGGAGGTAGAACTCGACG
                      ____________________________________________________________
consensus TTGCTGGTGACATCTAGGGTTTGGTCAGTGATGCACTTGACGCGGAGGTAGAACTCGACG
 
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JMFF015G13+ GAGCAATACTCGCACTGGCCGTCGCCGTACGCAGGCGTCGCAGTCACGCGAGAAGCGCAT
JMFF037A08+ GAGCAATACTCGCACTGGCCGTCGCCGTACGCAGGCGTCGCAGTCACGCGAGAAGCGCAT
JMSF002K21+ ACGCGAGAAGCGCAT
JMSF015F14+ GAGCAATACTCGCACTGGCCGTCGCCGT-CGCAGGCGTCGCAGTCACGCGAGAAGCGCAT
                      ____________________________________________________________
consensus GAGCAATACTCGCACTGGCCGTCGCCGTACGCAGGCGTCGCAGTCACGCGAGAAGCGCAT
 
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JMFF015G13+ GCTCATAGCGCGCTCGCTGGTGAGGGGGATGAGGCCGAGGCGGTGGGCGATGAACTCGTC
JMFF037A08+ GCTCATAGCGCGCTCGCTGGTGAGGGGGATGAGGCCGAGGCGGTGGGCGATGAACTCGTC
JMSF002K21+ GCTCATAGCGCGCTCGCTGGTGAGGGGGATGAGGCCGAGGCGGTGGGCGATGAACTCGTC
JMSF015F14+ GCTCATAGCGCGCTCGCTGGTGAGGGGGATGAGGCCGAGGCGGTGGGCGATGAACTCGTC
                      ____________________________________________________________
consensus GCTCATAGCGCGCTCGCTGGTGAGGGGGATGAGGCCGAGGCGGTGGGCGATGAACTCGTC
 
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JMFF015G13+ GTTGAGGACGGTGGAGTTGCACTCGATTTCGACGAGGTCGATGGCGATGGTGGGCACCTC
JMFF037A08+ GTTGAGGACGGTGGAGTTGCACTCGATTTCGACGAGGTCGATGGCGATGGTGGGCACCTC
JMSF002K21+ GTTGAGGACGGTGGAGTTGCACTCGATTTCGACGAGGTCGATGGCGATGGTGGGCACCTC
JMSF015F14+ GTTGAGGACGGTGGAGTTGCACTCGATTTCGACGAGGTCGATGGCGATGGTGGGCACCTC
                      ____________________________________________________________
consensus GTTGAGGACGGTGGAGTTGCACTCGATTTCGACGAGGTCGATGGCGATGGTGGGCACCTC
 
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JMFF015G13+ GGCGATCATCACGCGCCGAAGCGCGTTGGCCACGCTAGCGTCGGTGTCGCGAAGCTCAAA
JMFF037A08+ GGCGATCATCACGCGCCGAAGCGCGTTGGCCACGCTAGCGTCGGTGTCGCGAAGCTCAAA
JMSF002K21+ GGCGATCATCACGCGCCGAAGCGCGTTGGCCACGCTAGCGTCGGTGTCGCGAAGCTCAAA
JMSF015F14+ GGCGATCATCACGCGCCGAAGCGCGTNGGCCACGCTAGCGTCGGTGTCGCGAAGCTCAAA
                      ____________________________________________________________
consensus GGCGATCATCACGCGCCGAAGCGCGTTGGCCACGCTAGCGTCGGTGTCGCGAAGCTCAAA
 
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JMFF015G13+ CTTCATGTAGTCGTCCTTCACTTCCCGGATTTTTATCTTTGGGAACCTCTGGTACGATGC
JMFF037A08+ CTTCATGTAGTCGTCCTTCACTTCCCGGATTTTTATCTTTGGGAACCTCTGGTACGATGC
JMSF002K21+ CTTCATGTAGTCGTCCTTCACTTCCCGGATTTTTATCTTTGGGAACCTCTGGTACGATGC
JMSF015F14+ CTTCANGTAGTCGTCNTTCACTTCCCGGATTTTTATCTTTGGGAACCTCTGGTACGATGC
                      ____________________________________________________________
consensus CTTCATGTAGTCGTCCTTCACTTCCCGGATTTTTATCTTTGGGAACCTCTGGTACGATGC
 
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JMFF015G13+ ACCCTCCATTGTTGTCTTCCTCGTTCCTCTCTCACTTCTCAGCAAATACTCT
JMFF037A08+ ACCCTCCATTGTTGTCTTCCTCGTTCCTCTCTCACTTCTCAGCAAATACTCT
JMSF002K21+ ACCCTCCATTGTTGTCTTCCTCGTTCCTCTCTCACTTCTCAGCAAATACTCT
JMSF015F14+ ACCCTCCATTGTTGTNTTCCTCGTTCCTCTCTCACTTCTCAGCAAATACTCTAAAACCCC
                      ____________________________________________________________
consensus ACCCTCCATTGTTGTCTTCCTCGTTCCTCTCTCACTTCTCAGCAAATACTCTAAAACCCC