Contig 000676:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024O13Sequence522000676 (4)ref|XP_009800757.1|3e-14PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 isoform X1 [Nicotiana syl771012748 (4)ref|XP_009625987.1|1e-62PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Nicotiana tomentosiformi
JMSF014I16Sequence497000676 (4)ref|XP_009800757.1|1e-08PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 isoform X1 [Nicotiana syl793012748 (4)ref|XP_009625987.1|9e-65PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Nicotiana tomentosiformi
JMSF046D16Sequence786000676 (4)ref|XP_009800759.1|1e-57PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 isoform X2 [Nicotiana syl800012748 (4)ref|XP_009798332.1|6e-29PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like isoform X2 [Nicotian
JMSF047G05Sequence703000676 (4)ref|XP_009800757.1|1e-39PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 isoform X1 [Nicotiana syl755012748 (4)ref|XP_009798332.1|3e-31PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like isoform X2 [Nicotian

Alignment

This contig is upended


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JMSF046D16+                                                                 ACAATC
                      ____________________________________________________________
consensus                                                                   ACAATC
 
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JMSF046D16+           ATAAAAAATTTCTGGGAAAAAGCAATCCCCAGCTTCATCAATCCATGCAATCGATTGCTG
                      ____________________________________________________________
consensus             ATAAAAAATTTCTGGGAAAAAGCAATCCCCAGCTTCATCAATCCATGCAATCGATTGCTG
 
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JMSF046D16+           GAAACCCCTCTTCAAGTCCACCAGCACCATGGAGACAAAGTCAAGCACACAAATGTTACC
JMSF047G05+                            CCACCAGCACCANGGAGACAAAGTCAAGCACACAAATGTTACC
                      ____________________________________________________________
consensus             GAAACCCCTCTTCAAGTCCACCAGCACCATGGAGACAAAGTCAAGCACACAAATGTTACC
 
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JMSF046D16+           ATTAAAGCATACCTCTATTACAGACTTCTCCATCTGCAAATTTTGCTTAACCACTGCAAG
JMSF047G05+           ATTAAAGCATACCTCTATTACAGACTTCTCCATCTGCAAATTTTGCTTAACCACTGCAAG
                      ____________________________________________________________
consensus             ATTAAAGCATACCTCTATTACAGACTTCTCCATCTGCAAATTTTGCTTAACCACTGCAAG
 
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JMSF046D16+           TATGTTTTGAGGAAAGTCAGTCCATTTACCCTTTTTATAATACATCAAGCGGATTGGAGG
JMSF047G05+           TATGTTTTGAGGAAAGTCAGTCCATTTACCCTTTTTATAATACATCAAGCGGATTGGAGG
                      ____________________________________________________________
consensus             TATGTTTTGAGGAAAGTCAGTCCATTTACCCTTTTTATAATACATCAAGCGGATTGGAGG
 
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JMSF046D16+           TCCACTTCTTCTAAAATTCAGATAGTGTTGCACTGGAGATTTTCTGAGGTGAAACCCACC
JMFF024O13+                        AAATTCAGATAGTGTTGCACTGGAGATTTTCTGAGGTGAAACCCACC
JMSF047G05+           TCCACTTCTTCTAAAATTCAGATAGTGTTGCACTGGAGATTTTCTGAGGTGAAACCCACC
JMSF014I16+                                                                     CC
                      ____________________________________________________________
consensus             TCCACTTCTTCTAAAATTCAGATAGTGTTGCACTGGAGATTTTCTGAGGTGAAACCCACC
 
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JMSF046D16+           ACAGCTAGACTTGCTTTTGACTTCATCCAATTTTCTTCGCTTGCCAAACTTTTCTGTGGT
JMFF024O13+           ACAGCTAGACTTGCTTTTGACTTCATCCAATTTTCTTCGCTTGCCAAACTTTTCTGTGGT
JMSF047G05+           ACAGCTAGACTTGCTTTTGACTTCATCCAATTTTCTTCGCTTGCCAAACTTTTCTGTGGT
JMSF014I16+           ACAGCTAGACTTGCTTTTGACTTCATCCAATTTTCTTCGCTTGCCAAACTTTTCTGTGGT
                      ____________________________________________________________
consensus             ACAGCTAGACTTGCTTTTGACTTCATCCAATTTTCTTCGCTTGCCAAACTTTTCTGTGGT
 
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JMSF046D16+           AGAATTATCAGGGCAAGATGTTGGTAGTAACGAGTGGATAGTTCCATTATTATATGTCTC
JMFF024O13+           AGAATTATCAGGGCAAGATGTTGGTAGTAACGAGTGGATAGTTCCATTATTATATGTCTC
JMSF047G05+           AGAATTATCAGGGCAAGATGTTGGTAGTAACGAGTGGATAGTTCCATTATTATATGTCTC
JMSF014I16+           AGAATTATCAGGGCAAGATGTTGGTAGTAACGAGTGGATAGTTCCATTATTATATGTCTC
                      ____________________________________________________________
consensus             AGAATTATCAGGGCAAGATGTTGGTAGTAACGAGTGGATAGTTCCATTATTATATGTCTC
 
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JMSF046D16+           AGATTGAGTCTCAAGTTTTCTTTTCAAATTGACAACAATATGCTTACTGTTATCCAATAC
JMFF024O13+           AGATTGAGTCTCAAGTTTTCTTTTCAAATTGACAACAATATGCTTACTGTTATCCAATAC
JMSF047G05+           AGATTGAGTCTCAAGTTTTCTTTTCAAATTGACAACAATATGCTTACTGTTATCCAATAC
JMSF014I16+           AGATTGAGTCTCAAGTTTTCTTTTCAAATTGACAACAATATGCTTACTGTTATCCAATAC
                      ____________________________________________________________
consensus             AGATTGAGTCTCAAGTTTTCTTTTCAAATTGACAACAATATGCTTACTGTTATCCAATAC
 
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JMSF046D16+           CCTTCCGAATTTTGTTTCCATTTCTTCCTAGAGGATGAATCCCTGTCAACAACTTTAAAT
JMFF024O13+           CCTTCCGAATTTTGTTTCCATTTCTTCCTAGAGGATGAATCCCTGTCAACAACTTTAAAT
JMSF047G05+           CCTTCCGAATTTTGTTTCCATTTCTTCCTAGAGGATGAATCCCTGTCAACAACTTTAAAT
JMSF014I16+           CCTTCCGAATTTTGTTTCCATTTCTTCCTAGAGGATGAATCCCTGTCAACAACTTTAAAT
                      ____________________________________________________________
consensus             CCTTCCGAATTTTGTTTCCATTTCTTCCTAGAGGATGAATCCCTGTCAACAACTTTAAAT
 
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JMSF046D16+           CCAAGATTTCGAAGACAACTTTATACAGTTCAGTCACGGTTCTGTCTCAGAGTGACCGTT
JMFF024O13+           CCAAGATTTCGAAGACAACTTTATACAGTTCAGTCACGGTTCTGTCTCAGAGTGACCGTT
JMSF047G05+           CCAAGATTTCGAAGACAACTTTATACAGTTCAGTCACGGTTCTGTCTCAGAGTGACCGTT
JMSF014I16+           CCAAGATTTCGAAGACAACTTTATACAGTTCAGTCACGGTTCTGTCTCAGAGTGACCGTT
                      ____________________________________________________________
consensus             CCAAGATTTCGAAGACAACTTTATACAGTTCAGTCACGGTTCTGTCTCAGAGTGACCGTT
 
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JMSF046D16+           CCATTGTTAAATCCTTGATCATTGTGGCTAAGTTTGATGCTATGGACCATGGATCTACCT
JMFF024O13+           CCATTGTTAAATCCTTGATCATTGTGGCTAAGTTTGATGCTATGGACCATGGATCTACCT
JMSF047G05+           CCATTGTTAAATCCTTGATCATTGTGGCTAAGTTTGATGCTATGGACCATGGATCTACCT
JMSF014I16+           CCATTGTTAAATCCTTGATCATTGTGGCTAAGTTTGATGCTATGGACCATGGATCTACCT
                      ____________________________________________________________
consensus             CCATTGTTAAATCCTTGATCATTGTGGCTAAGTTTGATGCTATGGACCATGGATCTACCT
 
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JMSF046D16+           GAGTTGCAGAGATTGAAGAGCCGACGAATTAGTTTTCCTCCTACTCCGGCTGCTTTTTCC
JMFF024O13+           GAGTTGCAGAGATTGAAGAGCCGACGAATTAGTTTTCCTCCTACTCCGGCTGCTTTTTCC
JMSF047G05+           GAGTTGCAGAGATTGAAGAGCCGACGAATTAGTTTTCCTCCTACTCCGGCTGCTTTTTCC
JMSF014I16+           GAGTTGCAGAGATTGAAGAGCCGACGAATTAGTTTTCCTCCTACTCCGGCTGCTTTTTCC
                      ____________________________________________________________
consensus             GAGTTGCAGAGATTGAAGAGCCGACGAATTAGTTTTCCTCCTACTCCGGCTGCTTTTTCC
 
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JMSF046D16+           GTCAACGTCGGTGACAAACCCTAAAAGCCTCCGCCCAAAGAAACCTTAGCGGGAC     
JMFF024O13+           GTCAACGTCGGTGACAAACCCTAAAAGCCTCCGCCCAAAGAAACCTTAGCAGGAC     
JMSF047G05+           GTCAACGTCGGTGACAAACCCTAAAAGCCTCCGCCCAAAGAAACCTTAGCGGGAC     
JMSF014I16+           GTCAACGTCGGTGACAAACCCTAAAAGCCTCCGCCCAAAGAAACCTTAGCGGGACAGATC
                      ____________________________________________________________
consensus             GTCAACGTCGGTGACAAACCCTAAAAGCCTCCGCCCAAAGAAACCTTAGCGGGACAGATC