Contig 000668:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005J18Sequence375000668 (4)ref|XP_009761857.1|4e-12PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana syl
JMSF009N23Sequence330000668 (4)ref|XP_009761857.1|3e-12PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana syl673005669 (4)ref|XP_009606738.1|3e-114PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana tom
JMSF013G08Sequence196000668 (4)648005669 (4)ref|XP_009606738.1|2e-114PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana tom
JMSF020G15Sequence704000668 (4)ref|XP_009761857.1|2e-76PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana syl753005669 (4)ref|XP_009606738.1|1e-113PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana tom

Alignment

This contig is upended


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JMSF020G15+                                        TATCACTGCTTGAATTTACACCATTCAAAGG
                      ____________________________________________________________
consensus                                          TATCACTGCTTGAATTTACACCATTCAAAGG
 
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JMSF020G15+           GAAAACTTGGGAGAGTATTGGAAGAAGATATGCCAATGTTTTTCCTGAACCAGTGTAGGA
                      ____________________________________________________________
consensus             GAAAACTTGGGAGAGTATTGGAAGAAGATATGCCAATGTTTTTCCTGAACCAGTGTAGGA
 
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JMSF020G15+           CTGAATAACAACATCATGATTTTTAAGAATAGTTGGAATTGCAGCAGCCTGAACGTCTGT
                      ____________________________________________________________
consensus             CTGAATAACAACATCATGATTTTTAAGAATAGTTGGAATTGCAGCAGCCTGAACGTCTGT
 
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JMSF020G15+           TGGAACTGTAAATCCTTCCTTCTCAAGTCTGTCAACCAGTAAAGATGGCAGGCCAAGCTC
                      ____________________________________________________________
consensus             TGGAACTGTAAATCCTTCCTTCTCAAGTCTGTCAACCAGTAAAGATGGCAGGCCAAGCTC
 
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JMSF020G15+           AGAAAAGGATTTTGCAGCAAAAGGTGCTGCCCCTATGTCTATGGACTTCATCTCTTTCAC
                      ____________________________________________________________
consensus             AGAAAAGGATTTTGCAGCAAAAGGTGCTGCCCCTATGTCTATGGACTTCATCTCTTTCAC
 
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JMSF020G15+           TCCATTGTTTCTTTTCTGGTTCACCTTTTTCTTGGTATTGTTCTTGGGGACTTCAATTGT
                      ____________________________________________________________
consensus             TCCATTGTTTCTTTTCTGGTTCACCTTTTTCTTGGTATTGTTCTTGGGGACTTCAATTGT
 
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JMSF020G15+           GGAAACACCCTCCTGGAGCTTATTTTTAGCATTCCTGCTTATCGTTTCAACATCATTCTT
JMSF009N23+                                                         TCAACATCATTCTT
JMSF005J18+                                                         TCAACATCATTCTT
                      ____________________________________________________________
consensus             GGAAACACCCTCCTGGAGCTTATTTTTAGCATTCCTGCTTATCGTTTCAACATCATTCTT
 
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JMSF020G15+           CAATCCAAGGCTAGCTAGTGTAAGAGGACCAAAGTCACTTAAAAACCTTACTCTGCCATT
JMSF009N23+           CAATCCAAGGCTAGCTAGTGTAAGAGGACCAAAGTCACTTAAAAACCTTACTCTGCCATT
JMSF005J18+           CAATCCAAGGCTAGCTAGTGTAAGAGGACCAAAGTCACTTAAAAACCTTACTCTGCCATT
                      ____________________________________________________________
consensus             CAATCCAAGGCTAGCTAGTGTAAGAGGACCAAAGTCACTTAAAAACCTTACTCTGCCATT
 
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JMSF020G15+           AAGTGGAGGTATTCTAGTAAGCCCAGAAAGATTTCTCAGTGATAAGGAGTCCCCAAAATG
JMSF009N23+           AAGTGGAGGTATTCTAGTAAGCCCAGAAAGATTTCTCAGTGATAAGGAGTCCCCAAAATG
JMSF005J18+           AAGTGGAGGTATTCTAGTAAGCCCAGAAAGATTTCTCAGTGATAAGGAGTCCCCAAAATG
                      ____________________________________________________________
consensus             AAGTGGAGGTATTCTAGTAAGCCCAGAAAGATTTCTCAGTGATAAGGAGTCCCCAAAATG
 
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JMSF020G15+           TAGAAATGCCCTTGTTGCAGATAGAGCAGGCATGATTTTGCAATTTCCAGTTTGACTGAG
JMSF009N23+           TAGAAATGCCCTTGTTGCAGATAGAGCAGGCATGATTTTGCAATTTCCAGTTTGACTGAG
JMSF005J18+           TAGAAATGCCCTTGTTGCAGATAGAGCAGGCATGATTTTGCAATTTCCAGTTTGACTGAG
JMSF013G08+                                                       TTCCAGTTTGACTGAG
                      ____________________________________________________________
consensus             TAGAAATGCCCTTGTTGCAGATAGAGCAGGCATGATTTTGCAATTTCCAGTTTGACTGAG
 
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JMSF020G15+           AGTGGCTATTTCATTCCTTATTGCCAACTAAGTGTAACGGAACAAGCCAAAAAGGTCTAA
JMSF009N23+           AGTGGCTATTTCATTCCTTATTGCCAACTAAGTGTAACGGAACAAGCCAAAAAGGTCTAA
JMSF005J18+           AGTGGCTATTTCATTCCTTATTGCCAACTAAGTGTAACGGAACAAGCCAAAAAGGTCTAA
JMSF013G08+           AGTGGCTATTTCATTCCTTATTGCCAACTAAGTGTAACGGAACAAGCCAAAAAGGTCTAA
                      ____________________________________________________________
consensus             AGTGGCTATTTCATTCCTTATTGCCAACTAAGTGTAACGGAACAAGCCAAAAAGGTCTAA
 
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JMSF020G15+           AGCCCACTAGCAATGCAGTAGTTGGTCGTTTTAAAGCTTCACTAAGCATCAGCGCCCGGC
JMSF009N23+           AGCCCACTAGCAATGCAGTAGTTGGTCGTTTTAAAGCTTCACTAAGCATCAGCGCCCGGC
JMSF005J18+           AGCCCACTAGCAATGCAGTAGTTGGTCGTTTTAAAGCTTCACTAAGCATCAGCGCCCGGC
JMSF013G08+           AGCCCACTAGCAATGCAGTAGTTGGTCGTTTTAAAGCTTCACTAAGCATCAGCGCCCGGC
                      ____________________________________________________________
consensus             AGCCCACTAGCAATGCAGTAGTTGGTCGTTTTAAAGCTTCACTAAGCATCAGCGCCCGGC
 
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JMSF020G15+           GGCGTTCTTGCG                                                
JMSF009N23+           GGCGTTCTTGCG                                                
JMSF005J18+           GGCGTTCTTGCGGATGAGAACAGAATGCCTTATCACACTTATCACTTTAAACTTACGCCC
JMSF013G08+           GGCGTTCTTGCGGATGAGAACAGAATGCCTTATCACACTTATCACTTTAAACTTACGCCC
                      ____________________________________________________________
consensus             GGCGTTCTTGCGGATGAGAACAGAATGCCTTATCACACTTATCACTTTAAACTTACGCCC