Contig 000667:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013C05Sequence375000667 (2)ref|XP_009762727.1|1e-31PREDICTED: tyrosine decarboxylase 1-like isoform X2 [Nicotiana sylvestris]771013951 (2)ref|XP_009762727.1|1e-112PREDICTED: tyrosine decarboxylase 1-like isoform X2 [Nicotiana sylvestris]
JMSF019K08Sequence540000667 (2)ref|XP_009762727.1|5e-86PREDICTED: tyrosine decarboxylase 1-like isoform X2 [Nicotiana sylvestris]756013951 (2)ref|XP_009762727.1|5e-78PREDICTED: tyrosine decarboxylase 1-like isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF019K08+                   TNGAAAGAAAAGTATCAGGCAACTTGAGTGCTTTTGCGAGCCAATCCAAAAC
                      ____________________________________________________________
consensus                     TNGAAAGAAAAGTATCAGGCAACTTGAGTGCTTTTGCGAGCCAATCCAAAAC
 
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JMSF019K08+           AATCATTTCAAGTTCTGTTGCTGCCGGAGAAGTTATCCAACTGAAACCCACCATGTTTAT
                      ____________________________________________________________
consensus             AATCATTTCAAGTTCTGTTGCTGCCGGAGAAGTTATCCAACTGAAACCCACCATGTTTAT
 
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JMSF019K08+           TCCGGCACTAAGCATTTCCCCCAAAAATCCAGCCACGCTACTGTTAGAGGGAAAATATGC
                      ____________________________________________________________
consensus             TCCGGCACTAAGCATTTCCCCCAAAAATCCAGCCACGCTACTGTTAGAGGGAAAATATGC
 
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JMSF019K08+           AAAATAATCCGGGCTTTGCCAATGTGTAACTCCAGGTAATATCTTCGTCTGGACATCTTG
JMSF013C05+                                                        CGTCTGGACATCTTG
                      ____________________________________________________________
consensus             AAAATAATCCGGGCTTTGCCAATGTGTAACTCCAGGTAATATCTTCGTCTGGACATCTTG
 
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JMSF019K08+           AAGAACATCCTGCAACGTCTCGGGGTGAGTAGGTGCAGATTCTGGCAGGAGCCCGCGTAG
JMSF013C05+           AAGAACATCCTGCAACGTCTCGGGGTGAGTAGGTGCAGATTCTGGCAGGAGCCCGCGTAG
                      ____________________________________________________________
consensus             AAGAACATCCTGCAACGTCTCGGGGTGAGTAGGTGCAGATTCTGGCAGGAGCCCGCGTAG
 
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JMSF019K08+           ATAACCTGGCTGAACTTGACTGAGAACTGGGAAGCTCTCAATGTTCTTGTAGTAATCGGC
JMSF013C05+           ATAACCTGGCTGAACTTGACTGAGAACTGGGAAGCTCTCAATGTTCTTGTAGTAATCGGC
                      ____________________________________________________________
consensus             ATAACCTGGCTGAACTTGACTGAGAACTGGGAAGCTCTCAATGTTCTTGTAGTAATCGGC
 
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JMSF019K08+           AATGAAATCCACCATCTTGTGACCATATTCCCTCAGTTGCTCTGAATCCATTGGCTTCAA
JMSF013C05+           AATGAAATCCACCATCTTGTGACCATATTCCCTCAGTTGCTCTGAATCCATTGGCTTCAA
                      ____________________________________________________________
consensus             AATGAAATCCACCATCTTGTGACCATATTCCCTCAGTTGCTCTGAATCCATTGGCTTCAA
 
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JMSF019K08+           ATTCGACCCACCTTCCATTTTTGCTCTCTTTTTCCTTTTTCCTTTCTCTTTTTTCTTGCT
JMSF013C05+           ATTCGACCCACCTTCCATTTTTGCTCTCTTTTTCCTTTTTCCTTTCTCTTTTTTCTTGCT
                      ____________________________________________________________
consensus             ATTCGACCCACCTTCCATTTTTGCTCTCTTTTTCCTTTTTCCTTTCTCTTTTTTCTTGCT
 
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JMSF019K08+           GAAGAGTGGTGGTGGAGGTTCCTAGGAGAATACAAATATACAATCTGATAGTGAGCAGTG
JMSF013C05+           GAAGAGTGGTGGTGGAGGTTCCTAGGAGAATACAAATATACAATCTGATAGTGAGCAGTG
                      ____________________________________________________________
consensus             GAAGAGTGGTGGTGGAGGTTCCTAGGAGAATACAAATATACAATCTGATAGTGAGCAGTG
 
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JMSF019K08+           AACCAGT                                                     
JMSF013C05+           AACCAGTAGGAGGTGGGAATGGAGTAATAATAGATAAATAGATGGAAGAATATGAAAGGC
                      ____________________________________________________________
consensus             AACCAGTAGGAGGTGGGAATGGAGTAATAATAGATAAATAGATGGAAGAATATGAAAGGC