Contig 000665:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013B08Sequence502000665 (5)ref|XP_004251615.1|4e-58PREDICTED: cyclin-dependent kinase F-1 [Solanum lycopersicum]670004398 (2)emb|CAN61169.1|1e-69hypothetical protein VITISV_010446 [Vitis vinifera]
JMSF013D01Sequence449000665 (5)ref|XP_006353467.1|5e-58PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]744007219 (4)ref|XP_006353467.1|4e-91PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]
JMSF032J20Sequence687000665 (5)ref|XP_004251615.1|1e-98PREDICTED: cyclin-dependent kinase F-1 [Solanum lycopersicum]725007219 (4)ref|XP_006353467.1|8e-90PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]
JMSF043L20Sequence737000665 (5)ref|XP_004251615.1|6e-98PREDICTED: cyclin-dependent kinase F-1 [Solanum lycopersicum]753007219 (4)ref|XP_006353467.1|4e-80PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]
JMSF044G13Sequence761000665 (5)ref|XP_004251615.1|6e-98PREDICTED: cyclin-dependent kinase F-1 [Solanum lycopersicum]701007219 (4)ref|XP_006353467.1|2e-55PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF043L20+ GGCCACATTCCG
JMSF044G13+ AATCTGCAAATCGGTCCTCTTTGGCCACATTCCG
                      ____________________________________________________________
consensus AATCTGCAAATCGGTCCTCTTTGGCCACATTCCG
 
. : . : . : . : . : . :
JMSF043L20+ TTGATAATGATGTGATTGACCTTCTCTATAAGCATTCTCCATTACAGGAACGAACTCAGG
JMSF044G13+ TTGATAATGATGTGATTGACCTTCTCTATAAGCATTCTCCATTACAGGAACGAACTCAGG
JMSF032J20+ GG
                      ____________________________________________________________
consensus TTGATAATGATGTGATTGACCTTCTCTATAAGCATTCTCCATTACAGGAACGAACTCAGG
 
. : . : . : . : . : . :
JMSF043L20+ TGTATACATTGGGGTTGGGACATTCGGGGAGGCTTTCCCATAAGGTTGTCCATCATCAAC
JMSF044G13+ TGTATACATTGGGGTTGGGACATTCGGGGAGGCTTTCCCATAAGGTTGTCCATCATCAAC
JMSF032J20+ TGTATACATTGGGGTTGGGACATTCGGGGAGGCTTTCCCATAAGGTTGTCCATCATCAAC
                      ____________________________________________________________
consensus TGTATACATTGGGGTTGGGACATTCGGGGAGGCTTTCCCATAAGGTTGTCCATCATCAAC
 
. : . : . : . : . : . :
JMSF043L20+ AGCAGCAAGCCCAGGTGCCAGTAACATCCTAGCCTGTCCGAAATCGGCTAATTTGAGAAT
JMSF044G13+ AGCAGCAAGCCCAGGTGCCAGTAACATCCTAGCCTGTCCGAAATCGGCTAATTTGAGAAT
JMSF032J20+ AGCAGCAAGCCCAGGTGCCAGTAACATCCTAGCCTGTCCGAAATCGGCTAATTTGAGAAT
                      ____________________________________________________________
consensus AGCAGCAAGCCCAGGTGCCAGTAACATCCTAGCCTGTCCGAAATCGGCTAATTTGAGAAT
 
. : . : . : . : . : . :
JMSF043L20+ CCCATTGTCAGAAATCAACAAATTTGAAGGCTTCAAATCCCTATGCACGATAGAATTCCG
JMSF044G13+ CCCATTGTCAGAAATCAACAAATTTGAAGGCTTCAAATCCCTATGCACGATAGAATTCCG
JMSF032J20+ CCCATTGTCAGAAATCAACAAATTTGAAGGCTTCAAATCCCTATGCACGATAGAATTCCG
                      ____________________________________________________________
consensus CCCATTGTCAGAAATCAACAAATTTGAAGGCTTCAAATCCCTATGCACGATAGAATTCCG
 
. : . : . : . : . : . :
JMSF043L20+ GTGACAGGCATCGACGGCGCTCAGAATCTGAACCATCCACCGCTTGATCTCGCCGACGGT
JMSF044G13+ GTGACAGGCATCGACGGCGCTCAGAATCTGAACCATCCACCGCTTGATCTCGCCGACGGT
JMSF013D01+ ACCGCTTGATCTCGCCGACGGT
JMSF032J20+ GTGACAGGCATCGACGGCGCTCAGAATCTGAACCATCCACCGCTTGATCTCGCCGACGGT
JMSF013B08+ ACCGCTTGATCTCGCCGACNGT
                      ____________________________________________________________
consensus GTGACAGGCATCGACGGCGCTCAGAATCTGAACCATCCACCGCTTGATCTCGCCGACGGT
 
. : . : . : . : . : . :
JMSF043L20+ CAAGCCGTTGTCCCAATTCTTCTTGGCTGCTTTGATCACAGCTCCCAAGTCTGTGGGGAG
JMSF044G13+ CAAGCCGTTGTCCCAATTCTTCTTGGCTGCTTTGATCACAGCTCCCAAGTCTGTGGGGAG
JMSF013D01+ CAAGCCGTTGTCCCAATTCTTCTTGGCTGCTTTGATCACAGCTCCCAAGTCTGTGGGGAG
JMSF032J20+ CAAGCCGTTGTCCCAATTCTTCTTGGCTGCTTTGATCACAGCTCCCAAGTCTGTGGGGAG
JMSF013B08+ CAAGCCGTTGTCCCAATTCTTCTTGGCTGCTTTGATCACAGCTCCCAAGTCTGTGGGGAG
                      ____________________________________________________________
consensus CAAGCCGTTGTCCCAATTCTTCTTGGCTGCTTTGATCACAGCTCCCAAGTCTGTGGGGAG
 
. : . : . : . : . : . :
JMSF043L20+ GAACTCCAGGACCAGCACGGAGTCCTCGTCCTCGCTCCAGAAGAACTCGTGCATTACGAC
JMSF044G13+ GAACTCCAGGACCAGCACGGAGTCCTCGTCCTCGCTCCAGAAGAACTCGTGCATTACGAC
JMSF013D01+ GAACTCCAGGACCAGCACGGAGTCCTCGTCCTCGCTCCAGAAGAACTCGTGCATTACGAC
JMSF032J20+ GAACTCCAGGACCAGCACGGAGTCCTCGTCCTCGCTCCAGAAGAACTCGTGCATTACGAC
JMSF013B08+ GAACTCCAGGACCAGCACGGAGTCCTCGTCCTCGCTCCAGAAGAACTCGTGCATTACGAC
                      ____________________________________________________________
consensus GAACTCCAGGACCAGCACGGAGTCCTCGTCCTCGCTCCAGAAGAACTCGTGCATTACGAC
 
. : . : . : . : . : . :
JMSF043L20+ GACGTTTGGGCAGTTCTGGAGGGTCTGCAGGGCCTCGATTTCGCGGAGGGCCGACTGGTA
JMSF044G13+ GACGTTTGGGCAGTTCTGGAGGGTCTGCAGGGCCTCGATTTCGCGGAGGGCCGACTGGTA
JMSF013D01+ GACGTTTGGGCAGTTCTGGAGGGTCTGCAGGGCCTCGATTTCGCGGAGGGCCGACTGGTA
JMSF032J20+ GACGTTTGGGCAGTTCTGGAGGGTCTGCAGGGCCTCGATTTCGCGGAGGGCCGACTGGTA
JMSF013B08+ GACGTTTGGGCAGTTCTGGAGGGTCTGCAGGGCCTCGATTTCGCGGAGGGCCGACTGGTA
                      ____________________________________________________________
consensus GACGTTTGGGCAGTTCTGGAGGGTCTGCAGGGCCTCGATTTCGCGGAGGGCCGACTGGTA
 
. : . : . : . : . : . :
JMSF043L20+ ATCGTGGATTTCCTTCAAGGCGACGGTGAGTGAGTCGGATCGACGACGGCCTCGATACAC
JMSF044G13+ ATCGTGGATTTCCTTCAAGGCGACGGTGAGTGAGTCGGATCGACGACGGCCTCGATACAC
JMSF013D01+ ATCGTGGATTTCCTTCAAGGCGACGGTGAGTGAGTCGGATCGACGACGGCCTCGATACAA
JMSF032J20+ ATCGTGGATTTCCTTCAAGGCGACGGTGAGTGAGTCGGATCGACGACGGCCTCGATACAC
JMSF013B08+ ATCGTGGATTTCCTTCAAGGCGACGGTGAGTGAGTCGGATCGACGACGGCCTCGATACAC
                      ____________________________________________________________
consensus ATCGTGGATTTCCTTCAAGGCGACGGTGAGTGAGTCGGATCGACGACGGCCTCGATACAC
 
. : . : . : . : . : . :
JMSF043L20+ GTCCGAATACGCACCCGACCCGACCCGCTCGAAGATCTCGTATTTGATCGTGATTTCTTT
JMSF044G13+ GTCCGAATACGCACCCGACCCGACCCGCTCGAAGATCTCGTATTTGATCGTGATTTCTTT
JMSF013D01+ GTCCGAATACGCACCCGACCCGACCCGCTCGAAGATCTCGTATTTGATCGTGATTTCTTT
JMSF032J20+ GTCCGAATACGCACCCGACCCGACCCGCTCGAAGATCTCGTATTTGATCGTGATTTCTTT
JMSF013B08+ GTCCGAATACGCACCCGACCCGACCCGCTCGAAGATCTCGTATTTGATCGTGATTTCTTT
                      ____________________________________________________________
consensus GTCCGAATACGCACCCGACCCGACCCGCTCGAAGATCTCGTATTTGATCGTGATTTCTTT
 
. : . : . : . : . : . :
JMSF043L20+ ACGAGTGTGGATGCTCCAGCTCTTGGAGGGCGGAGAATCCATTGGGGTTTCTTTCTCTCT
JMSF044G13+ ACGAGTGTGGATGCTCCAGCTCTTGGAGGGCGGAGAATCCATTGGGGTTTCTTTCTCTCT
JMSF013D01+ ACGAGTGTGGATGCTCCAGCTCTTGGAGGGCGGAGAATCCATTGGGGTTTCTTTCTCTCT
JMSF032J20+ ACGAGTGTGGATGCTCCAGCTCTTGGAGGGCGGAGAATCCATTGGGGTTTCTTTCTCTCT
JMSF013B08+ ACGAGTGTGGATGCTCCAGCTCTTGGAGGGCGGAGAATCCATTGGGGTTTCTTTCTCTCT
                      ____________________________________________________________
consensus ACGAGTGTGGATGCTCCAGCTCTTGGAGGGCGGAGAATCCATTGGGGTTTCTTTCTCTCT
 
. : . : . : . : . : . :
JMSF043L20+ CTCTTGTTTCGTTATAAGTGGCGGTGCTCACGGTGGTCGTCGTCGGCGAGGGAATGATTC
JMSF044G13+ CTCTTGTTTCGTTATAAGTGGCGGTGCTCACGGTGGTCGTCGTCGGCGAGGGAATGATTC
JMSF013D01+ CTCTTGTTTCGTTATAAGTGGCGGTGCTCACGGTGGTCGTCGTCGGCGAGGGAATGATTC
JMSF032J20+ CTCTTGTTTCGTTATAAGTGGCGGTGCTCACGGTGGTCGTCGTCGGCGAGGGAATGATTC
JMSF013B08+ CTCTTGTTTCGTTATAAGTGGCGGTGCTCACGGTGGTCGTCGTCGGCGAGGGAATGATTC
                      ____________________________________________________________
consensus CTCTTGTTTCGTTATAAGTGGCGGTGCTCACGGTGGTCGTCGTCGGCGAGGGAATGATTC
 
. : . : . : . : . : . :
JMSF043L20+ TTTC
JMSF044G13+ TTTC
JMSF013D01+ TTTC
JMSF032J20+ TTTCTCCGATTCTAGAACGTCTTCC
JMSF013B08+ TTTCTCCGATTCTAGAACGTCTTCCGACGAATTTAAGAATGAAAGATGTTATTTCCACCC
                      ____________________________________________________________
consensus TTTCTCCGATTCTAGAACGTCTTCCGACGAATTTAAGAATGAAAGATGTTATTTCCACCC