Contig 000665:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013B08Sequence502000665 (5)ref|XP_004251615.1|4e-58PREDICTED: cyclin-dependent kinase F-1 [Solanum lycopersicum]670004398 (2)emb|CAN61169.1|1e-69hypothetical protein VITISV_010446 [Vitis vinifera]
JMSF013D01Sequence449000665 (5)ref|XP_006353467.1|5e-58PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]744007219 (4)ref|XP_006353467.1|4e-91PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]
JMSF032J20Sequence687000665 (5)ref|XP_004251615.1|1e-98PREDICTED: cyclin-dependent kinase F-1 [Solanum lycopersicum]725007219 (4)ref|XP_006353467.1|8e-90PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]
JMSF043L20Sequence737000665 (5)ref|XP_004251615.1|6e-98PREDICTED: cyclin-dependent kinase F-1 [Solanum lycopersicum]753007219 (4)ref|XP_006353467.1|4e-80PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]
JMSF044G13Sequence761000665 (5)ref|XP_004251615.1|6e-98PREDICTED: cyclin-dependent kinase F-1 [Solanum lycopersicum]701007219 (4)ref|XP_006353467.1|2e-55PREDICTED: cyclin-dependent kinase F-1-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF043L20+                                                           GGCCACATTCCG
JMSF044G13+                                     AATCTGCAAATCGGTCCTCTTTGGCCACATTCCG
                      ____________________________________________________________
consensus                                       AATCTGCAAATCGGTCCTCTTTGGCCACATTCCG
 
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JMSF043L20+           TTGATAATGATGTGATTGACCTTCTCTATAAGCATTCTCCATTACAGGAACGAACTCAGG
JMSF044G13+           TTGATAATGATGTGATTGACCTTCTCTATAAGCATTCTCCATTACAGGAACGAACTCAGG
JMSF032J20+                                                                     GG
                      ____________________________________________________________
consensus             TTGATAATGATGTGATTGACCTTCTCTATAAGCATTCTCCATTACAGGAACGAACTCAGG
 
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JMSF043L20+           TGTATACATTGGGGTTGGGACATTCGGGGAGGCTTTCCCATAAGGTTGTCCATCATCAAC
JMSF044G13+           TGTATACATTGGGGTTGGGACATTCGGGGAGGCTTTCCCATAAGGTTGTCCATCATCAAC
JMSF032J20+           TGTATACATTGGGGTTGGGACATTCGGGGAGGCTTTCCCATAAGGTTGTCCATCATCAAC
                      ____________________________________________________________
consensus             TGTATACATTGGGGTTGGGACATTCGGGGAGGCTTTCCCATAAGGTTGTCCATCATCAAC
 
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JMSF043L20+           AGCAGCAAGCCCAGGTGCCAGTAACATCCTAGCCTGTCCGAAATCGGCTAATTTGAGAAT
JMSF044G13+           AGCAGCAAGCCCAGGTGCCAGTAACATCCTAGCCTGTCCGAAATCGGCTAATTTGAGAAT
JMSF032J20+           AGCAGCAAGCCCAGGTGCCAGTAACATCCTAGCCTGTCCGAAATCGGCTAATTTGAGAAT
                      ____________________________________________________________
consensus             AGCAGCAAGCCCAGGTGCCAGTAACATCCTAGCCTGTCCGAAATCGGCTAATTTGAGAAT
 
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JMSF043L20+           CCCATTGTCAGAAATCAACAAATTTGAAGGCTTCAAATCCCTATGCACGATAGAATTCCG
JMSF044G13+           CCCATTGTCAGAAATCAACAAATTTGAAGGCTTCAAATCCCTATGCACGATAGAATTCCG
JMSF032J20+           CCCATTGTCAGAAATCAACAAATTTGAAGGCTTCAAATCCCTATGCACGATAGAATTCCG
                      ____________________________________________________________
consensus             CCCATTGTCAGAAATCAACAAATTTGAAGGCTTCAAATCCCTATGCACGATAGAATTCCG
 
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JMSF043L20+           GTGACAGGCATCGACGGCGCTCAGAATCTGAACCATCCACCGCTTGATCTCGCCGACGGT
JMSF044G13+           GTGACAGGCATCGACGGCGCTCAGAATCTGAACCATCCACCGCTTGATCTCGCCGACGGT
JMSF013D01+                                                 ACCGCTTGATCTCGCCGACGGT
JMSF032J20+           GTGACAGGCATCGACGGCGCTCAGAATCTGAACCATCCACCGCTTGATCTCGCCGACGGT
JMSF013B08+                                                 ACCGCTTGATCTCGCCGACNGT
                      ____________________________________________________________
consensus             GTGACAGGCATCGACGGCGCTCAGAATCTGAACCATCCACCGCTTGATCTCGCCGACGGT
 
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JMSF043L20+           CAAGCCGTTGTCCCAATTCTTCTTGGCTGCTTTGATCACAGCTCCCAAGTCTGTGGGGAG
JMSF044G13+           CAAGCCGTTGTCCCAATTCTTCTTGGCTGCTTTGATCACAGCTCCCAAGTCTGTGGGGAG
JMSF013D01+           CAAGCCGTTGTCCCAATTCTTCTTGGCTGCTTTGATCACAGCTCCCAAGTCTGTGGGGAG
JMSF032J20+           CAAGCCGTTGTCCCAATTCTTCTTGGCTGCTTTGATCACAGCTCCCAAGTCTGTGGGGAG
JMSF013B08+           CAAGCCGTTGTCCCAATTCTTCTTGGCTGCTTTGATCACAGCTCCCAAGTCTGTGGGGAG
                      ____________________________________________________________
consensus             CAAGCCGTTGTCCCAATTCTTCTTGGCTGCTTTGATCACAGCTCCCAAGTCTGTGGGGAG
 
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JMSF043L20+           GAACTCCAGGACCAGCACGGAGTCCTCGTCCTCGCTCCAGAAGAACTCGTGCATTACGAC
JMSF044G13+           GAACTCCAGGACCAGCACGGAGTCCTCGTCCTCGCTCCAGAAGAACTCGTGCATTACGAC
JMSF013D01+           GAACTCCAGGACCAGCACGGAGTCCTCGTCCTCGCTCCAGAAGAACTCGTGCATTACGAC
JMSF032J20+           GAACTCCAGGACCAGCACGGAGTCCTCGTCCTCGCTCCAGAAGAACTCGTGCATTACGAC
JMSF013B08+           GAACTCCAGGACCAGCACGGAGTCCTCGTCCTCGCTCCAGAAGAACTCGTGCATTACGAC
                      ____________________________________________________________
consensus             GAACTCCAGGACCAGCACGGAGTCCTCGTCCTCGCTCCAGAAGAACTCGTGCATTACGAC
 
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JMSF043L20+           GACGTTTGGGCAGTTCTGGAGGGTCTGCAGGGCCTCGATTTCGCGGAGGGCCGACTGGTA
JMSF044G13+           GACGTTTGGGCAGTTCTGGAGGGTCTGCAGGGCCTCGATTTCGCGGAGGGCCGACTGGTA
JMSF013D01+           GACGTTTGGGCAGTTCTGGAGGGTCTGCAGGGCCTCGATTTCGCGGAGGGCCGACTGGTA
JMSF032J20+           GACGTTTGGGCAGTTCTGGAGGGTCTGCAGGGCCTCGATTTCGCGGAGGGCCGACTGGTA
JMSF013B08+           GACGTTTGGGCAGTTCTGGAGGGTCTGCAGGGCCTCGATTTCGCGGAGGGCCGACTGGTA
                      ____________________________________________________________
consensus             GACGTTTGGGCAGTTCTGGAGGGTCTGCAGGGCCTCGATTTCGCGGAGGGCCGACTGGTA
 
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JMSF043L20+           ATCGTGGATTTCCTTCAAGGCGACGGTGAGTGAGTCGGATCGACGACGGCCTCGATACAC
JMSF044G13+           ATCGTGGATTTCCTTCAAGGCGACGGTGAGTGAGTCGGATCGACGACGGCCTCGATACAC
JMSF013D01+           ATCGTGGATTTCCTTCAAGGCGACGGTGAGTGAGTCGGATCGACGACGGCCTCGATACAA
JMSF032J20+           ATCGTGGATTTCCTTCAAGGCGACGGTGAGTGAGTCGGATCGACGACGGCCTCGATACAC
JMSF013B08+           ATCGTGGATTTCCTTCAAGGCGACGGTGAGTGAGTCGGATCGACGACGGCCTCGATACAC
                      ____________________________________________________________
consensus             ATCGTGGATTTCCTTCAAGGCGACGGTGAGTGAGTCGGATCGACGACGGCCTCGATACAC
 
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JMSF043L20+           GTCCGAATACGCACCCGACCCGACCCGCTCGAAGATCTCGTATTTGATCGTGATTTCTTT
JMSF044G13+           GTCCGAATACGCACCCGACCCGACCCGCTCGAAGATCTCGTATTTGATCGTGATTTCTTT
JMSF013D01+           GTCCGAATACGCACCCGACCCGACCCGCTCGAAGATCTCGTATTTGATCGTGATTTCTTT
JMSF032J20+           GTCCGAATACGCACCCGACCCGACCCGCTCGAAGATCTCGTATTTGATCGTGATTTCTTT
JMSF013B08+           GTCCGAATACGCACCCGACCCGACCCGCTCGAAGATCTCGTATTTGATCGTGATTTCTTT
                      ____________________________________________________________
consensus             GTCCGAATACGCACCCGACCCGACCCGCTCGAAGATCTCGTATTTGATCGTGATTTCTTT
 
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JMSF043L20+           ACGAGTGTGGATGCTCCAGCTCTTGGAGGGCGGAGAATCCATTGGGGTTTCTTTCTCTCT
JMSF044G13+           ACGAGTGTGGATGCTCCAGCTCTTGGAGGGCGGAGAATCCATTGGGGTTTCTTTCTCTCT
JMSF013D01+           ACGAGTGTGGATGCTCCAGCTCTTGGAGGGCGGAGAATCCATTGGGGTTTCTTTCTCTCT
JMSF032J20+           ACGAGTGTGGATGCTCCAGCTCTTGGAGGGCGGAGAATCCATTGGGGTTTCTTTCTCTCT
JMSF013B08+           ACGAGTGTGGATGCTCCAGCTCTTGGAGGGCGGAGAATCCATTGGGGTTTCTTTCTCTCT
                      ____________________________________________________________
consensus             ACGAGTGTGGATGCTCCAGCTCTTGGAGGGCGGAGAATCCATTGGGGTTTCTTTCTCTCT
 
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JMSF043L20+           CTCTTGTTTCGTTATAAGTGGCGGTGCTCACGGTGGTCGTCGTCGGCGAGGGAATGATTC
JMSF044G13+           CTCTTGTTTCGTTATAAGTGGCGGTGCTCACGGTGGTCGTCGTCGGCGAGGGAATGATTC
JMSF013D01+           CTCTTGTTTCGTTATAAGTGGCGGTGCTCACGGTGGTCGTCGTCGGCGAGGGAATGATTC
JMSF032J20+           CTCTTGTTTCGTTATAAGTGGCGGTGCTCACGGTGGTCGTCGTCGGCGAGGGAATGATTC
JMSF013B08+           CTCTTGTTTCGTTATAAGTGGCGGTGCTCACGGTGGTCGTCGTCGGCGAGGGAATGATTC
                      ____________________________________________________________
consensus             CTCTTGTTTCGTTATAAGTGGCGGTGCTCACGGTGGTCGTCGTCGGCGAGGGAATGATTC
 
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JMSF043L20+           TTTC                                                        
JMSF044G13+           TTTC                                                        
JMSF013D01+           TTTC                                                        
JMSF032J20+           TTTCTCCGATTCTAGAACGTCTTCC                                   
JMSF013B08+           TTTCTCCGATTCTAGAACGTCTTCCGACGAATTTAAGAATGAAAGATGTTATTTCCACCC
                      ____________________________________________________________
consensus             TTTCTCCGATTCTAGAACGTCTTCCGACGAATTTAAGAATGAAAGATGTTATTTCCACCC