| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS026F11 | Sequence | 626 | 000664 (8) | ref|XP_004246564.1| | 1e-72 | PREDICTED: pre-mRNA cleavage complex 2 protein Pcf11-like [Solanum lycopersicum | |||||
| JMFS026F12 | Sequence | 629 | 000664 (8) | ref|XP_004246564.1| | 3e-73 | PREDICTED: pre-mRNA cleavage complex 2 protein Pcf11-like [Solanum lycopersicum | |||||
| JMFS041F04 | Sequence | 621 | 000664 (8) | ref|XP_004246564.1| | 5e-08 | PREDICTED: pre-mRNA cleavage complex 2 protein Pcf11-like [Solanum lycopersicum | |||||
| JMSF012J18 | Sequence | 388 | 000664 (8) | 801 | 000664 (8) | ref|XP_004246564.1| | 4e-17 | PREDICTED: pre-mRNA cleavage complex 2 protein Pcf11-like [Solanum lycopersicum | |||
| JMSF013A16 | Sequence | 367 | 000664 (8) | 786 | 000664 (8) | ref|XP_004246564.1| | 2e-18 | PREDICTED: pre-mRNA cleavage complex 2 protein Pcf11-like [Solanum lycopersicum | |||
| JMSF045K03 | Sequence | 778 | 000664 (8) | gb|EYU34365.1| | 5e-25 | hypothetical protein MIMGU_mgv1a0238131mg, partial [Erythranthe guttata] | 708 | 019434 | ref|XP_010654041.1| | 3e-39 | PREDICTED: polyadenylation and cleavage factor homolog 4 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMFS026F12+ TTCATTCAATTGACCTTTCTGAACACGGTGAATATTCTTG
JMFS026F11+ ATTCAATTGACCTTTCTGAACACGGTGAATATTCTTG
____________________________________________________________
consensus TTCATTCAATTGACCTTTCTGAACACGGTGAATATTCTTG
. : . : . : . : . : . :
JMFS026F12+ ATAGAAGGATCCACCCATGATCTTCCCGGAGGACCAGAACTAACACTAGCTGTTCTCTCC
JMFS026F11+ ATAGAAGGATCCACCCATGATCTTCCCGGAGGACCAGAACTAACACTAGCTGTTCTCTCC
____________________________________________________________
consensus ATAGAAGGATCCACCCATGATCTTCCCGGAGGACCAGAACTAACACTAGCTGTTCTCTCC
. : . : . : . : . : . :
JMFS026F12+ AGTCTCTCTACATCCTCAGATGAGCTTACAAGTGTTGCACTAATGCCACCAGCATTTCCC
JMFS026F11+ AGTCTCTCTACATCCTCAGATGAGCTTACAAGTGTTGCACTAATGCCACCAGCATTTCCC
____________________________________________________________
consensus AGTCTCTCTACATCCTCAGATGAGCTTACAAGTGTTGCACTAATGCCACCAGCATTTCCC
. : . : . : . : . : . :
JMFS026F12+ TTTGCCCTAGCTGGCTGCTGCAGGCTCTGCCTAGCCTCCAAATACTTGGGATTGACATGA
JMFS026F11+ TTTGCCCTAGCTGGCTGCTGCAGGCTCTGCCTAGCCTCCAAATACTTGGGATTGACATGA
____________________________________________________________
consensus TTTGCCCTAGCTGGCTGCTGCAGGCTCTGCCTAGCCTCCAAATACTTGGGATTGACATGA
. : . : . : . : . : . :
JMFS026F12+ ATACTACGTGCAGGACGTGGAGTCTGTGATTCATTTCTAGAAGTTGTTCCTGAAGATGAA
JMFS026F11+ ATACTACGTGCAGGACGTGGAGTCTGTGATTCATTTCTAGAAGTTGTTCCTGAAGATGAA
____________________________________________________________
consensus ATACTACGTGCAGGACGTGGAGTCTGTGATTCATTTCTAGAAGTTGTTCCTGAAGATGAA
. : . : . : . : . : . :
JMFS026F12+ CCATTGACCCCAGTTGTAAATCCAAGCTCCTTCTCAATTAATTGAAGTGTTTGTGGAGGG
JMFS026F11+ CCATTGACCCCAGTTGTAAATCCAAGCTCCTTCTCAATTAATTGAAGTGTTTGTGGAGGG
____________________________________________________________
consensus CCATTGACCCCAGTTGTAAATCCAAGCTCCTTCTCAATTAATTGAAGTGTTTGTGGAGGG
. : . : . : . : . : . :
JMFS026F12+ AACACCCCTTTCCATGTTCCAAAAAGATGCCGCATGCCAGAATGTATTGATGGATCAACC
JMFS026F11+ AACACCCCTTTCCATGTTCCAAAAAGATGCCGCATGCCAGAATGTATTGATGGATCAACC
____________________________________________________________
consensus AACACCCCTTTCCATGTTCCAAAAAGATGCCGCATGCCAGAATGTATTGATGGATCAACC
. : . : . : . : . : . :
JMFS026F12+ TGTCTGTACACCTTGCAAAAAACCTCTGGTAGCCTGGTAGCAAAATACTTAATATAATCC
JMFS026F11+ TGTCTGTACACCTTGCAAAAAACCTCTGGTAGCCTGGTAGCAAAATACTTAATATAATCC
____________________________________________________________
consensus TGTCTGTACACCTTGCAAAAAACCTCTGGTAGCCTGGTAGCAAAATACTTAATATAATCC
. : . : . : . : . : . :
JMFS026F12+ CTCCCAATATTCTTCACAATACTGTCCAAAAGATAGAGAGATGGCAACTTTTGATCACTG
JMFS026F11+ CTCCCAATATTCTTCACAATACTGTCCAAAAGATAGAGAGATGGCAACTTTTGATCACTG
____________________________________________________________
consensus CTCCCAATATTCTTCACAATACTGTCCAAAAGATAGAGAGATGGCAACTTTTGATCACTG
. : . : . : . : . : . :
JMFS026F12+ GGAACCTCAATAATGTTGGCACAGATCGTGGCTGCAATAGCCTTGGCAGCTGGTATACTC
JMFS026F11+ GGAACCTCAATAATGTTGGCACAGATCGTGGCTGCAATAGCCTTGGCAGCTGGTATACTC
rJMSF013A16- ACCTCAATAATGTTGGCACAGATCGTGGCTGCAATAGCCTTGGCAGCTGGTATACTC
rJMSF012J18- ACCTCAATAATGTTGGCACAGATCGTGGCTGCAATAGCCTTGGCAGCTGGTATACTC
JMSF045K03+ ACCTCAATAATGTTGGCACAGATCGTGGCTGCAATAGCCTTGGCAGCTGGTATACTC
____________________________________________________________
consensus GGAACCTCAATAATGTTGGCACAGATCGTGGCTGCAATAGCCTTGGCAGCTGGTATACTC
. : . : . : . : . : . :
JMFS026F12+ TCGCCGGCAATGATAGTCAAGTTGGTGATTATTGGCTTCGAATTGAAGG
JMFS026F11+ TCGCCGGCAATGATAGTCAAGTTGGTGATTATTGGCTTCGAATTGAAGG
rJMSF013A16- TCGCCGGCAATGATAGTCAAGTTGGTGATTATTGGCTTCGAATTGAAGGTCAGCTCAGCC
rJMSF012J18- TAGCCGGCAATGATAGTCAAGTTGGTGATTATTGGCTTCGAATTGAAGGTCAGCTCAGCC
JMFS041F04+ CAGCC
JMSF045K03+ TCGCCGGCAATGATAGTCAAGTTGGTGATTATTGGCTTCGAATTGAAGGTCAGCTCAGCC
____________________________________________________________
consensus TCGCCGGCAATGATAGTCAAGTTGGTGATTATTGGCTTCGAATTGAAGGTCAGCTCAGCC
. : . : . : . : . : . :
rJMSF013A16- AAAGCCGTCTTATACTGACTGACCAGCTCCTGATGATTCTGTTGCTGCTGTTGTTGTGGA
rJMSF012J18- AAAGCCGTCTTATACTGACTGACCAGCTCCTGATGATTCTGTTGCTGCTGTTGTTGTGGA
JMFS041F04+ AAAGCCGTCTTATACTGACTGACCAGCTCCTGATGATTCTGTGNCTGCTGTTGTTGTGGA
JMSF045K03+ AAAGCCGTCTTATACTGACTGACCAGCTCCTGATGATTCTGTTGCTGCTGTTGTTGTGGA
____________________________________________________________
consensus AAAGCCGTCTTATACTGACTGACCAGCTCCTGATGATTCTGTTGCTGCTGTTGTTGTGGA
. : . : . : . : . : . :
rJMSF013A16- TAAGATCCACGAACTGAGTCACTACTCTCTGAGTCTCCTCCTCCCCTCTCGCTAGCTCGA
rJMSF012J18- TAAGATCCACGAACTGAGTCACTACTCTCTGAGTCTCCTCCTCCCCTCTCGCTAGCTCGA
JMFS041F04+ TAAGATCCACGAACTGAGTCACTACTCTNTGAGTCTCCTCCTCCCCTCTCGCTAGCTCGA
JMSF045K03+ TAAGATCCACGAACTGAGTCACTACTCTCTGAGTCTCCTCCTCCCCTCTCGCTAGCTCGA
____________________________________________________________
consensus TAAGATCCACGAACTGAGTCACTACTCTCTGAGTCTCCTCCTCCCCTCTCGCTAGCTCGA
. : . : . : . : . : . :
rJMSF013A16- AATCTTGAGCCTACTGAGCCTGAAGCCATCGGCCGTTGCTGAACAACACTCCGTACATTC
rJMSF012J18- AATCTTGAGCCTACTGAGCCTGAAGCCATCGGCCGTTGCTGAACAACACTCCGTACATTC
JMFS041F04+ AATCTTGAGCCTACTGAGCCTGAAGCCATCGGCCGTTGCTGAACAACACTCCGTACATTC
JMSF045K03+ AATCTTGAGCCTACTGAGCCTGAAGCCATCGGCCGTTGCTGAACAACACTCCGTACATTC
____________________________________________________________
consensus AATCTTGAGCCTACTGAGCCTGAAGCCATCGGCCGTTGCTGAACAACACTCCGTACATTC
. : . : . : . : . : . :
rJMSF013A16- AGCGTACGATTCATAGCAGGATCTTCAGCTAATCTCGGTTTCTTCAGCCCCGGCTCGATT
rJMSF012J18- AGCGTACGATTCATAGCAGGATCTTCAGCTAATCTCGGTTTCTTCAGCCCCGGCTCGATT
JMFS041F04+ AGCGTACGATTCATAGCAGGATCTTCAGCTAATCTCGGTTTCTTCAGCCCCGGCTCGATT
JMSF045K03+ AGCGTACGATTCATAGCAGGATCTTCAGCTAATCTCGGTTTCTTCAGCCCCGGCTCGATT
JMSF012J18+ TT
____________________________________________________________
consensus AGCGTACGATTCATAGCAGGATCTTCAGCTAATCTCGGTTTCTTCAGCCCCGGCTCGATT
. : . : . : . : . : . :
rJMSF013A16- CTCGATCTGTCAAATGGTCTACGAGAATTCTCCATCTCCATCAATTATTCTCACCACTCA
rJMSF012J18- CTCGATCTGTCAAATGGTCTACGAGAATTCTCCATCTCCATCAATTATTCTCACCACTCA
JMFS041F04+ CTCGATCTGTCAAATGGTCTACGAGAATTCTCCATCTCCATCAATTATTCTCACCACTCA
JMSF045K03+ CTCGATCTGTCAAATGGTCTACGAGAATTCTCCATCTCCATCAATTATTCTCACCACTCA
JMSF012J18+ CTCGATCTGTCAAATGGTCTACGAGAATTCTCCATCTCCATCAATTATTCTCACCACTCA
JMSF013A16+ CCACTCA
____________________________________________________________
consensus CTCGATCTGTCAAATGGTCTACGAGAATTCTCCATCTCCATCAATTATTCTCACCACTCA
. : . : . : . : . : . :
rJMSF013A16- AACAAACCCTAATCCGCTCTATGGTACATCAATTACAGGGTTACAAAAAAAACCACAATA
rJMSF012J18- AACAAACCCTAATCCGCTCTATGGTACATCAATTACAGGGTTACAAAAAAAACCACAATA
JMFS041F04+ AACAAACCCTAATCCGCTCTATGGTACATCAATTACAGGGTTACAAAAAAAACCACAATA
JMSF045K03+ AACAAACCCTAATCCGCTCTATGGTACATCAATTACAGGGTTACAAAAAAAACCACAATA
JMSF012J18+ AACAAACCCTAATCCGCTCTATGGTACATCAATTACAGGGTTACAAAAAAAACCACAATA
JMSF013A16+ AACAAACCCTAATCCGCTCTATGGTACATCAATTACAGGGTTACAAAAAAAACCACAATA
____________________________________________________________
consensus AACAAACCCTAATCCGCTCTATGGTACATCAATTACAGGGTTACAAAAAAAACCACAATA
. : . : . : . : . : . :
rJMSF013A16- AATTAAATTAAATTAAATTAAATTAAATTAAAAAGTCTATAACTCATTCATCATTATTAT
rJMSF012J18- AATTAAATTAAATTAAATTAAATTAAATTAAAAAGTCTATAACTCATTCATCATTATTAT
JMFS041F04+ AATTAAATTAAATTAAATTAAATTAAATTAAAAAGTCTATAACTCATTCATCATTATTAT
JMSF045K03+ AATTAAATTAAATTAAATTAAATTAAATTAAAAAGTCTATAACTCATTCATCATTATTAT
JMSF012J18+ AATTAAATTAAATTAAATTAAATTAAATTAAAAAGTCTATAACTCATTCATCATTATTAT
JMSF013A16+ AATTAAATTAAATTAAATTAAATTAAATTAAAAAGTCTATAACTCATTCATCATTATTAT
____________________________________________________________
consensus AATTAAATTAAATTAAATTAAATTAAATTAAAAAGTCTATAACTCATTCATCATTATTAT
. : . : . : . : . : . :
rJMSF013A16- GTAAATGAGAATTACAAGAATGAAAGACTATGAAACTAAATCCGATCTATGCATCTTCNC
rJMSF012J18- GTAAATGAGAATTACAAGAATGAAAGACTATGAAACTAAATCCGATCTATGCATCTTCAC
JMFS041F04+ GTAAATGAGAATTACAAGAATGAAAGACTATGAAACTAAATCCGATCTATGCATCTTCAC
JMSF045K03+ GTAAATGAGAATTACAAGAATGAAAGACTATGAAACTAAATCCGATCTATGCATCTTCAC
JMSF012J18+ GTAAATGAGAATTACAAGAATGAAAGACTATGAAACTAAATCCGATCTATGCATCTTCAC
JMSF013A16+ GTAAATGAGAATTACAAGAATGAAAGACTATGAAACTAAATCCGATCTATGCATCTTCAC
____________________________________________________________
consensus GTAAATGAGAATTACAAGAATGAAAGACTATGAAACTAAATCCGATCTATGCATCTTCAC
. : . : . : . : . : . :
rJMSF013A16- ATAAAAACCTGAAGCTGGTAAACTGCATCT
rJMSF012J18- ATAGAAACCTGAAGCTGGTAAACTGCATCTCAA
JMFS041F04+ ATAGAAACCTGAAGCTGGTAAACTGCATCTCAAATCTCAAAGTATACAATGACAAATCTG
JMSF045K03+ ATAGAAACCTGAAGCTGGTAAACTGCATCTCAAATCTCAAAGTATACAATGACAAATCTG
JMSF012J18+ ATAGAAACCTGAAGCTGGTAAACTGCATCTCAAATCTCAAAGTATACAATGACAAATCTG
JMSF013A16+ ATAGAAACCTGAAGCTGGTAAACTGCATCTCAAATCTCAAAGTATACAATGACAAATCTG
____________________________________________________________
consensus ATAGAAACCTGAAGCTGGTAAACTGCATCTCAAATCTCAAAGTATACAATGACAAATCTG
. : . : . : . : . : . :
JMFS041F04+ AGACCCGGTAGCCGAATTGATTATCGGTTATCGGTTGGGTATGGGTAGATTGATTCGGGT
JMSF045K03+ AGACCCGGTAGCCGAATTGATTATCGGTTATCGGTTGGGTATGGGTAGATTGATTCGGGT
JMSF012J18+ AGACCCGGTAGCCGAATTGATTATCGGTTATCGGTTGGGTATGGGTAGATTGATTCGGGT
JMSF013A16+ AGACCCGGTAGCCGAATTGATTATCGGTTATCGGTTGGGTATGGGTAGATTGATTCGGGT
____________________________________________________________
consensus AGACCCGGTAGCCGAATTGATTATCGGTTATCGGTTGGGTATGGGTAGATTGATTCGGGT
. : . : . : . : . : . :
JMFS041F04+ GGAAATCTAGGGTTTC
JMSF045K03+ GGAAATCTAGGGTTTC
JMSF012J18+ GGAAATCTAGGGTTTCCTC
JMSF013A16+ GGAAATCTAGGGTTTCCTCTCGGTTGGGAAGAGTCCCTCTGGCCTGCACCTCTTAATATC
____________________________________________________________
consensus GGAAATCTAGGGTTTCCTCTCGGTTGGGAAGAGTCCCTCTGGCCTGCACCTCTTAATATC