Contig 000663:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038E24Sequence556000663 (5)ref|XP_011092875.1|6e-72PREDICTED: 50S ribosomal protein L5, chloroplastic [Sesamum indicum]752000663 (5)ref|XP_004246669.1|2e-128PREDICTED: 50S ribosomal protein L5, chloroplastic [Solanum lycopersicum]
JMSF010N04Sequence374000663 (5)ref|XP_011092875.1|7e-15PREDICTED: 50S ribosomal protein L5, chloroplastic [Sesamum indicum]762016038emb|CDP08770.1|2e-62unnamed protein product [Coffea canephora]
JMSF012O14Sequence411000663 (5)ref|XP_009612573.1|2e-35PREDICTED: 50S ribosomal protein L5, chloroplastic [Nicotiana tomentosiformis]740000663 (5)ref|XP_004246669.1|3e-130PREDICTED: 50S ribosomal protein L5, chloroplastic [Solanum lycopersicum]

Alignment

This contig is upended


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rJMFF038E24-                                                  CAGCAATGTGCTAGTTGATT
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consensus                                                     CAGCAATGTGCTAGTTGATT
 
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rJMFF038E24-          GGTTTAACTACACATCATTCATGTTGAATGATTAATTAACAAACAAACAGAAGTACAGAA
rJMSF012O14-          GGTTTAACTACACATCATTCATGTTGAATGATTAATTAACAAACAAACAGAAGTACAGAA
                      ____________________________________________________________
consensus             GGTTTAACTACACATCATTCATGTTGAATGATTAATTAACAAACAAACAGAAGTACAGAA
 
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rJMFF038E24-          CGTGTTACAACTTCTTGATCCCTCGGGAAAAAGAACCATACTCATTTCCTTGCTTTTTGC
rJMSF012O14-          CGTGTTACAACTTCTTGATCCCTCGGGAAAAAGAACCATACTCATTTCCTTGCTTTTTGC
                      ____________________________________________________________
consensus             CGTGTTACAACTTCTTGATCCCTCGGGAAAAAGAACCATACTCATTTCCTTGCTTTTTGC
 
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rJMFF038E24-          TTTGCTTTTGAGTCGAAGTGGTGAGACTTGAGCTTCTTCTTTCGGACATCAGTTAATTGG
rJMSF012O14-          TTTGCTTTTGAGTCGAAGTGGTGAGACTTGAGCTTCTTCTTTCGGACATCAGTTAATTGG
                      ____________________________________________________________
consensus             TTTGCTTTTGAGTCGAAGTGGTGAGACTTGAGCTTCTTCTTTCGGACATCAGTTAATTGG
 
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rJMFF038E24-          CCACCGCCACCCTCCCTGAATGGCATTCCCATCAGAGCCAGCAACCGCTGCCCTTCTTTA
rJMSF012O14-          CCACCGCCACCCTCCCTGAATGGCATTCCCATCAGAGCCAGCAATCGCTGCCCTTCTTTA
                      ____________________________________________________________
consensus             CCACCGCCACCCTCCCTGAATGGCATTCCCATCAGAGCCAGCAATCGCTGCCCTTCTTTA
 
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rJMFF038E24-          TCAGTTTTGGCAGTTGTAGTAATGCAAACATCCATTCCTCTTGCCTTCCCAAGTATATCA
rJMSF012O14-          TCAGTTTTGGCAGTTGTAGTAATGCAAACATCCATTCCTCTTGCCTTCCCAAGTATATCA
                      ____________________________________________________________
consensus             TCAGTTTTGGCAGTTGTAGTAATGCAAACATCCATTCCTCTTGCCTTCCCAAGTATATCA
 
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rJMFF038E24-          GAGGTTAGCTCTGGGAACACACTCTGGTCACGAAATCCAATGCTGTAATTCCCGTGGCCA
rJMSF012O14-          GAGGTTAGCTCTGGGAACACACTCTGGTCACGAAATCCAATGCTGTAATTCCCGTGGCCA
                      ____________________________________________________________
consensus             GAGGTTAGCTCTGGGAACACACTCTGGTCACGAAATCCAATGCTGTAATTCCCGTGGCCA
 
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rJMFF038E24-          TCAAAACTGTTGGGGCTAACACCTTGGAAATCCCTTGTCCTAGGAAGCCCCAGATTGATG
rJMSF012O14-          TCAAAACTGTTGGGGCTAACACCTTGGAAATCCCTTGTCCTAGGAAGCCCCAGATTGATG
JMFF038E24+                                                 CCTAGGAAGCCCCAGATTGATG
                      ____________________________________________________________
consensus             TCAAAACTGTTGGGGCTAACACCTTGGAAATCCCTTGTCCTAGGAAGCCCCAGATTGATG
 
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rJMFF038E24-          AGGCGATCTAGAAATGCATACATTACCTTTCCTCTAAGAGTGACAGCAATTCCAAGAGGC
rJMSF012O14-          AGGCGATCTAGAAATGCATACATTACCTTTCCTCTAAGAGTGACAGCAATTCCAAGAGGC
JMFF038E24+           AGGCGATCTAGAAATGCATACATTACCTTTCCTCTAAGAGTGACAGCAATTCCAAGAGGC
                      ____________________________________________________________
consensus             AGGCGATCTAGAAATGCATACATTACCTTTCCTCTAAGAGTGACAGCAATTCCAAGAGGC
 
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rJMFF038E24-          TGATCTTCTCTTATCTTGAATGTGGCAATAGCCTTCTTTGCCCTAGTCTTCACAGGCCTT
rJMSF012O14-          TGATCTTCTCTTATCTTGAATGTGGCAATAGCCTTCTTTGCCCTAGTCTTCACAGGCCTT
JMFF038E24+           TGATCTTCTCTTATCTTGAATGTGGCAATAGCCTTCTTTGCCCTAGTCTTCACAGGCCTT
                      ____________________________________________________________
consensus             TGATCTTCTCTTATCTTGAATGTGGCAATAGCCTTCTTTGCCCTAGTCTTCACAGGCCTT
 
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rJMFF038E24-          TGCCCTGTAATTTGAGCCAAATCACTCAATGCAGCATCCAGACCCTTGGAATTTTGTGCA
rJMSF012O14-          TGCCCTGTAATTTGAGCCAAATCACTCAATGCAGCATCCAGACCCTTGGAATTTTGTGCA
JMFF038E24+           TGCCCTGTAATTTGAGCCAAATCACTCAATGCAGCATCCAGACCCTTGGAATTTTGTGCA
JMSF012O14+                    ATTTGAGCCAAATCACTCAATGCAGCATCCAGACCCTTGGAATTTTGTGCA
                      ____________________________________________________________
consensus             TGCCCTGTAATTTGAGCCAAATCACTCAATGCAGCATCCAGACCCTTGGAATTTTGTGCA
 
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rJMFF038E24-          GCATCCCCGATTCCACAGTTCACTACTATCTTTTCAACCTTCGGAACCTCGAGAATATTC
rJMSF012O14-          GCATCCCCGATTCCACAGTTCACTACTATCTTTTCAACCTTCGGAACCTCGAGAATATTC
JMFF038E24+           GCATCCCCGATTCCACAGTTCACTACTATCTTTTCAACCTTCGGAACCTCGAGAATATTC
JMSF010N04+                                                       AACCTCGAGAATATTC
JMSF012O14+           GCATCCCCGATTCCACAGTTCACTACTATCTTTTCAACCTTCGGAACCTCGAGAATATTC
                      ____________________________________________________________
consensus             GCATCCCCGATTCCACAGTTCACTACTATCTTTTCAACCTTCGGAACCTCGAGAATATTC
 
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rJMFF038E24-          TTGTAATTGAATTCCTCTTTAAGCAGAGGAACGATTTTTTCGACGTANGAAGTCTTGAGC
rJMSF012O14-          TTGTAATTGAATTCCTCTTTAAGCAGAGGAACGATTTTTTCGACGTAGGAAGTCTTGAGC
JMFF038E24+           TTGTAATTGAATTCCTCTTTAAGCAGAGGAACGATTTTTTCGACGTAGGAAGTCTTGAGC
JMSF010N04+           TTGTAATTGAATTCCTCTTTAAGCAGAGGAACGATTTTTTCGACGTAGGAAGTCTTGAGC
JMSF012O14+           TTGTAATTGAATTCCTCTTTAAGCAGAGGAACGATTTTTTCGACGTAGGAAGTCTTGAGC
                      ____________________________________________________________
consensus             TTGTAATTGAATTCCTCTTTAAGCAGAGGAACGATTTTTTCGACGTAGGAAGTCTTGAGC
 
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rJMFF038E24-          CGGTTAGTCTTT                                                
rJMSF012O14-          CGGTTAGTCTTTTCCGATTC                                        
JMFF038E24+           CGGTTAGTCTTTTCCGATTCCGTTTTGTCCACCAGAACTATCCCTGTGGACCCTGACGCA
JMSF010N04+           CGGTTAGTCTTTTCCGATTCCGTTTTGTCCACCAGAACTATCCCTGTGGACCCTGACGCA
JMSF012O14+           CGGTTAGTCTTTTCCGATTCCGTTTTGTCCACCAGAACTATCCCTGTGGACCCTGACGCA
                      ____________________________________________________________
consensus             CGGTTAGTCTTTTCCGATTCCGTTTTGTCCACCAGAACTATCCCTGTGGACCCTGACGCA
 
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JMFF038E24+           GCCTTCACACATAGGCCGCGACGCCAACACTTCAGGTTTCCGGCCGGCAAGGGGACGGAA
JMSF010N04+           GCCTTCACACATAGGCCGCGACGCCAACACTTCAGGTTTCCGGCCGGCAAGGGGACGGAA
JMSF012O14+           GCCTTCACACATAGGCCGCGACGCCAACACTTCAGGTTTCCGGCCGGCAAGGGGACGGAA
                      ____________________________________________________________
consensus             GCCTTCACACATAGGCCGCGACGCCAACACTTCAGGTTTCCGGCCGGCAAGGGGACGGAA
 
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JMFF038E24+           TGCACTGGTAATCGGGAGTGGAATGAGGAGGCGCTGGAGTGGAGAAGCGCTGGAGAAGAC
JMSF010N04+           TGCACTGGTAATCGGGAGTGGAATGAGGAGGCGCTGGAGTGGAGAAGCGCTGGAGAAGAC
JMSF012O14+           TGCACTGGTAATCGGGAGTGGAATGAGGAGGCGCTGGAGTGGAGAAGCGCTGGAGAAGAC
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consensus             TGCACTGGTAATCGGGAGTGGAATGAGGAGGCGCTGGAGTGGAGAAGCGCTGGAGAAGAC
 
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JMFF038E24+           GCCATTAGTGGCGACGGCGAAGCTTTGAGGGTGGAGGATGATGAAGTGAAATGC      
JMSF010N04+           GCCATTAGTGGCGACGGCGAAGCTTTGAGGGTGGAGGATGAT                  
JMSF012O14+           GCCATTAGTGGCGACGGCGAAGCTTTGAGGGTGGAGGATGATGAAGTGAAATGCTCGGTC
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consensus             GCCATTAGTGGCGACGGCGAAGCTTTGAGGGTGGAGGATGATGAAGTGAAATGCTCGGTC