| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS153B02 | Sequence | 621 | 000660 (4) | gb|KJB55756.1| | 6e-73 | hypothetical protein B456_009G092400 [Gossypium raimondii] | |||||
| JMSF012J14 | Sequence | 534 | 000660 (4) | ref|XP_002525631.1| | 1e-43 | villin 1-4, putative [Ricinus communis] gb|EEF36749.1| villin 1-4, putative [Ric | 792 | 008236 (5) | ref|XP_010650910.1| | 3e-61 | PREDICTED: villin-1 isoform X1 [Vitis vinifera] emb|CBI15965.3| unnamed protein |
| JMSF028M04 | Sequence | 610 | 000660 (4) | ref|XP_002525631.1| | 6e-57 | villin 1-4, putative [Ricinus communis] gb|EEF36749.1| villin 1-4, putative [Ric | 701 | 008236 (5) | ref|XP_010650910.1| | 1e-55 | PREDICTED: villin-1 isoform X1 [Vitis vinifera] emb|CBI15965.3| unnamed protein |
| JMSF048E23 | Sequence | 681 | 000660 (4) | ref|XP_007016120.1| | 9e-66 | Villin-like 1 [Theobroma cacao] gb|EOY33739.1| Villin-like 1 [Theobroma cacao] | 740 | 008236 (5) | ref|XP_010650910.1| | 8e-60 | PREDICTED: villin-1 isoform X1 [Vitis vinifera] emb|CBI15965.3| unnamed protein |
This contig is upended
. : . : . : . : . : . :
JMFS153B02+ GTTCAAGGATGCCCGAGTAAAAGGAACTTCTTTAACATGAACAACGTGATC
JMSF048E23+ TTTAACATGAACAACGTGATC
____________________________________________________________
consensus GTTCAAGGATGCCCGAGTAAAAGGAACTTCTTTAACATGAACAACGTGATC
. : . : . : . : . : . :
JMFS153B02+ TCCCTTGCACGTTAACATGCTGATCGGGTATTCCTTGCTCTTTTCATTTGCTTGGCCTCT
JMSF028M04+ CTTGGCCTCT
JMSF048E23+ TCCCTTGCACGTTAACATGCTGATCGGGTATTCCTTGCTCTTTTCATTTGCTTGGCCTCT
____________________________________________________________
consensus TCCCTTGCACGTTAACATGCTGATCGGGTATTCCTTGCTCTTTTCATTTGCTTGGCCTCT
. : . : . : . : . : . :
JMFS153B02+ CGAAAACGTGCCTTCAATCGGGATAATACAAGGCTTAAAATACGACAAGAACTTCTCGGT
JMSF028M04+ CGAAAACGTGCCTTCAATCGGGATAATACAAGGCTTAAAATACGACAAGAACTTCTCGGT
JMSF048E23+ CGAAAACGTGCCTTCAATCGGGATAATACAAGGCTTAAAATACGACAAGAACTTCTCGGT
____________________________________________________________
consensus CGAAAACGTGCCTTCAATCGGGATAATACAAGGCTTAAAATACGACAAGAACTTCTCGGT
. : . : . : . : . : . :
JMFS153B02+ TTCTTCCCCTTGAACTTCTCGATATTGTACAGTGTAGGACCCGAGAGCTGCATCGAGCTC
JMSF028M04+ TTCTTCCCCTTGAACTTCTCGATATTGTACAGTGTAGGACCCGAGAGCTGCATCGAGCTC
JMSF048E23+ TTCTTCCCCTTGAACTTCTCGATATTGTACAGTGTAGGACCCGAGAGCTGCATCGAGCTC
JMSF012J14+ CCCTTGAACTTCTCGATATTGTACAGTGTAGGACCCGAGAGCTGCATCGAGCTC
____________________________________________________________
consensus TTCTTCCCCTTGAACTTCTCGATATTGTACAGTGTAGGACCCGAGAGCTGCATCGAGCTC
. : . : . : . : . : . :
JMFS153B02+ AAGAGCTTTGTCTGACACCAACTTCGAATCTACCTGTTTAGCATTAGTTCCGATCCAATA
JMSF028M04+ AAGAGCTTTGTCTGACACCAACTTCGAATCTACCTGTTTAGCATTAGTTCCGATCCAATA
JMSF048E23+ AAGAGCTTTGTCTGACACCAACTTCGAATCTACCTGTTTAGCATTAGTTCCGATCCAATA
JMSF012J14+ AAGAGCTTTGTCTGACACCAACTTCGAATCTACCTGTTTAGCATTAGTTCCGATCCAATA
____________________________________________________________
consensus AAGAGCTTTGTCTGACACCAACTTCGAATCTACCTGTTTAGCATTAGTTCCGATCCAATA
. : . : . : . : . : . :
JMFS153B02+ GTGTATATCGTGCTGACAGATTCCAGTTTTAAGCAGCACCGTATGTAAAACTAGGTAAGT
JMSF028M04+ GTGTATATCGTGCTGACAGATTCCAGTTTTAAGCAGCACCGTATGTAAAACTAGGTAAGT
JMSF048E23+ GTGTATATCGTGCTGACAGATTCCAGTTTTAAGCAGCACCGTATGTAAAACTAGGTAAGT
JMSF012J14+ GTGTATATCGTGCTGACAGATTCCAGTTTTAAGCAGCACCGTATGTAAAACTAGGTAAGT
____________________________________________________________
consensus GTGTATATCGTGCTGACAGATTCCAGTTTTAAGCAGCACCGTATGTAAAACTAGGTAAGT
. : . : . : . : . : . :
JMFS153B02+ GCTTCCAGAATAGAATTTCCCATGGAATGATTTCGGGACTGGGACTAATTGAAGATTCTC
JMSF028M04+ GCTTCCAGAATAGAATTTCCCATGGAATGATTTCGGGACTGGGACTAATTGAAGATTCTC
JMSF048E23+ GCTTCCAGAATAGAATTTCCCATGGAATGATTTCGGGACTGGGACTAATTGAAGATTCTC
JMSF012J14+ GCTTCCAGAATAGAATTTCCCATGGAATGATTTCGGGACTGGGACTAATTGAAGATTCTC
____________________________________________________________
consensus GCTTCCAGAATAGAATTTCCCATGGAATGATTTCGGGACTGGGACTAATTGAAGATTCTC
. : . : . : . : . : . :
JMFS153B02+ TACGCCCCAGATATCCAAACCAGGTTTGGCTCCTGCTCCCTGAAACGCTGGATCCACGTC
JMSF028M04+ TACGCCCCAGATATCCAAACCAGGTTTGGCTCCTGCTCCCTGAAACGCTGGATCCACGTC
JMSF048E23+ TACGCCCCAGATATCCAAACCAGGTTTGGCTCCTGCTCCCTGAAACGCTGGATCCACGTC
JMSF012J14+ TACGCCCCAGATATCCAAACCAGGTTTGGCTCCTGCTCCCTGAAACGCTGGATCCACGTC
____________________________________________________________
consensus TACGCCCCAGATATCCAAACCAGGTTTGGCTCCTGCTCCCTGAAACGCTGGATCCACGTC
. : . : . : . : . : . :
JMFS153B02+ TTTACCAAACAGTGCCATTGCCTTTCAATTTTCAAACATCTGATTCTCAACAATCCATTA
JMSF028M04+ TTTACCAAACAGTGCCATTGCCTTTCAATTTTCAAACATCTGATTCTCAACAATCCATTA
JMSF048E23+ TTTACCAAACAGTGCCATTGCCTTTCAATTTTCAAACATCTGATTCTCAACAATCCACTA
JMSF012J14+ TTTACCAAACAGTGCCATTGCCTTTCAATTTTCAAACATCTGATTCTCAACAATCCATTA
____________________________________________________________
consensus TTTACCAAACAGTGCCATTGCCTTTCAATTTTCAAACATCTGATTCTCAACAATCCATTA
. : . : . : . : . : . :
JMFS153B02+ CAGAATAACTTGAAATCAGCC
JMSF028M04+ CAGAATAACTTGAAATCAGCCCATCATGCTCAGAACCACATATCAAATCAGAAATGCTGA
JMSF048E23+ CAGAATAACTTGAAATCAGCCCATCATGCTCAGAACCACATATCAAATCAGAAATGCTGA
JMSF012J14+ CAGAATAACTTGAAATCAGCCCATCATGCTCAGAACCACATATCAAATCAGAAATGCTGA
____________________________________________________________
consensus CAGAATAACTTGAAATCAGCCCATCATGCTCAGAACCACATATCAAATCAGAAATGCTGA
. : . : . : . : . : . :
JMSF028M04+ TAAAAGCTAAACCCAAACTGTATAACATAACAAAGATTCAAACTTTAGCCGCCCAGATTC
JMSF048E23+ TAAAAGCTAAACCCAAACTGTATAACATAACAAAGATTCAAACTTTAGCCGCCCAGATTC
JMSF012J14+ TAAAAGCTAAACCCAAACTGTATAACATAACAAAGATTCAAACTTTAGCCGCCCAGATTC
____________________________________________________________
consensus TAAAAGCTAAACCCAAACTGTATAACATAACAAAGATTCAAACTTTAGCCGCCCAGATTC
. : . : . : . : . : . :
JMSF028M04+ TTCTTACGCAGAGTTCAGACCAGCAAAGAAACATTCTATCGATTCTAGCAAGCTTTTACC
JMSF048E23+ TTCTTACGCAGAGTTCAGACCAGCAAAGAAACATTCTATCGATTCTAGCAAGCTTTTACC
JMSF012J14+ TTCTTACGCAGAGTTCAGACCAGCAAAGAAACATTCTATCGATTCTAGCAAGCTTTTACC
____________________________________________________________
consensus TTCTTACGCAGAGTTCAGACCAGCAAAGAAACATTCTATCGATTCTAGCAAGCTTTTACC