Contig 000657:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN039F23Sequence546000657 (5)ref|XP_009611322.1|1e-13PREDICTED: small acidic protein 1 [Nicotiana tomentosiformis]
JMSF012H23Sequence246000657 (5)ref|XP_009611322.1|1e-15PREDICTED: small acidic protein 1 [Nicotiana tomentosiformis]443000657 (5)ref|XP_009611322.1|3e-14PREDICTED: small acidic protein 1 [Nicotiana tomentosiformis]
JMSF033B08Sequence433000657 (5)ref|XP_009611322.1|2e-13PREDICTED: small acidic protein 1 [Nicotiana tomentosiformis]389000657 (5)ref|XP_009611322.1|1e-13PREDICTED: small acidic protein 1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFN039F23+                                        CAATCAGAAACGACGTAAAATTCTCATACAA
                      ____________________________________________________________
consensus                                          CAATCAGAAACGACGTAAAATTCTCATACAA
 
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JMFN039F23+           CTCAGTAAACACACGGTAATTTCACCTAGAATTCTAGAGAGTAATAGTTTATACTGATGA
                      ____________________________________________________________
consensus             CTCAGTAAACACACGGTAATTTCACCTAGAATTCTAGAGAGTAATAGTTTATACTGATGA
 
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JMFN039F23+           AGTAAATGCAATTAAACCCTAATCAGAACTACTTCAACAAGAGACTGGCAACTGAAAAAC
JMSF033B08+                                                              CTGAAAAAC
rJMSF012H23-                                                             CTGAAAAAC
                      ____________________________________________________________
consensus             AGTAAATGCAATTAAACCCTAATCAGAACTACTTCAACAAGAGACTGGCAACTGAAAAAC
 
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JMFN039F23+           ACAATGAACATAAAATTTTATTTAAACTTTCAATTTCCGGTTAATTCTTCAGCAGAATCC
rJMSF033B08-                                          ATTTCCGGTTAATTCTTCAGCAGAATCC
JMSF033B08+           ACAATGAACATAAAATTTTATTTAAACTTTCAATTTCCGGTTAATTCTTCAGCAGAATCC
rJMSF012H23-          ACAATGAACATAAAATTTTATTTAAACTTTCAATTTCCGGTTAATTCTTCAGCAGAATCC
                      ____________________________________________________________
consensus             ACAATGAACATAAAATTTTATTTAAACTTTCAATTTCCGGTTAATTCTTCAGCAGAATCC
 
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JMFN039F23+           ACTGAGTGGATATTCAGAAACACGACAGATAATAAAGAGTAGAAGGATTGATTTGGCAGG
rJMSF033B08-          ACTGAGTGGATATTCAGAAACACGACAGATAATAAAGAGTAGAAGGATTGATTTGGCAGG
JMSF033B08+           ACTGAGTGGATATTCAGAAACACGACAGATAATAAAGAGTAGAAGGATTGATTTGGCAGG
rJMSF012H23-          ACTGAGTGGATATTCAGAAACACGACAGATAATAAAGAGTAGAAGGATTGATTTGGCAGG
                      ____________________________________________________________
consensus             ACTGAGTGGATATTCAGAAACACGACAGATAATAAAGAGTAGAAGGATTGATTTGGCAGG
 
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JMFN039F23+           GAGAGGAGAGGAGGGGGGACTAAATTCACTAAAACACCGTTTCAGTTGATGTCGGAATCG
rJMSF033B08-          GAGAGGAGAGGAGGGGGGACTAAATTCACTAAAACACCGTTTCAGTTGATGTCGGAATCG
JMSF033B08+           GAGAGGAGAGGAGGGGGGACTAAATTCACTAAAACACCGTTTCAGTTGATGTCGGAATCG
rJMSF012H23-          GAGAGGAGAGGAGGGGGGACTAAATTCACTAAAACACCGTTTCAGTTGATGTCGGAATCG
JMSF012H23+                                                                 GAATCG
                      ____________________________________________________________
consensus             GAGAGGAGAGGAGGGGGGACTAAATTCACTAAAACACCGTTTCAGTTGATGTCGGAATCG
 
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JMFN039F23+           TCGAAATCGTCTTCAAAGGAGTTGAAGAAGTCGGCATCGGCGAGGCGGTGGTGCTCGGTA
rJMSF033B08-          TCGAAATCGTCTTCAAAGGAGTTGAAGAAGTCGGCATCGGCGAGGCGGTGGTGCTCGGTA
JMSF033B08+           TCGAAATCGTCTTCAAAGGAGTTGAAGAAGTCGGCATCGGCGAGGCGGTGGTGCTCGGTA
rJMSF012H23-          TCGAAATCGTCTTCAAAGGAGTTGAAGAAGTCGGCATCGGCGAGGCGGTGGTGCTCGGTA
JMSF012H23+           TCGAAATCGTCTTCAAAGGAGTTGAAGAAGTCGGCATCGGCGAGGCGGTGGTGCTCGGTA
                      ____________________________________________________________
consensus             TCGAAATCGTCTTCAAAGGAGTTGAAGAAGTCGGCATCGGCGAGGCGGTGGTGCTCGGTA
 
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JMFN039F23+           GGGCCGCCGAGGGGACCCTCGCCAAAGATCTCGAGCGCTTCCACGTCGTCTACGTCCATC
rJMSF033B08-          GGGCCGCCGAGGGGACTCTCGCCAAAGATCTCGAGCGCTTCCACGTCGTCTACGTCCATC
JMSF033B08+           GGGCCGCCGAGGGGACTCTCGCCAAAGATCTCGAGCGCTTCCACGTCGTCTACGTCCATC
rJMSF012H23-          GGGCCGCCGAGGGGACCCTCGCCAAAGATCTCGAGCGCTTCCACGTCGTCTACGTCCATC
JMSF012H23+           GGGCCGCCGAGGGGACCCTCGCCAAAGATCTCGAGCGCTTCCACGTCGTCTACGTCCATC
                      ____________________________________________________________
consensus             GGGCCGCCGAGGGGACCCTCGCCAAAGATCTCGAGCGCTTCCACGTCGTCTACGTCCATC
 
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JMFN039F23+           GCCATGGTGGATCCTTGCTCATCCAAATCCGCGAAGTAGTCTACCGCCATAGGCTTCATC
rJMSF033B08-          GCCATGGTGGATCCTTGCTCATCCAAATCCGCGAAGTAGTCTACCGCCATAGGCTTCATC
JMSF033B08+           GCCATGGTGGATCCTTGCTCATCCAAATCCGCGAAGTAGTCTACCGCCATAGGCTTCATC
rJMSF012H23-          GCCATGGTGGATCCTTGCTCATCCAAATCCGCGAAGTAGTCTACCGCCATAGGCTTCATC
JMSF012H23+           GCCATGGTGGATCCTTGCTCATCCAAATCCGCGAAGTAGTCTACCGCCATAGGCTTCATC
                      ____________________________________________________________
consensus             GCCATGGTGGATCCTTGCTCATCCAAATCCGCGAAGTAGTCTACCGCCATAGGCTTCATC
 
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JMFN039F23+           TTTTCAGTTCTCAATTCTCTTCTCAGAAGCCTCTT                         
rJMSF033B08-          TTTTCAGTTCTCAATTCTCTTCTCAGAAGCCTCTTGTTTCCTTCTTGCGTCGC       
JMSF033B08+           TTTTCAGTTCTCAATTCTCTTCTCAGAAGCCTCTTGTTTCCTTCTTGCGTCGC       
rJMSF012H23-          TTTTCAGTTCTCAATTCTCTTCTCAGAAGCCTCTTGTTTCCTTCTTGCGTCGC       
JMSF012H23+           TTTTCAGTTCTCAATTCTCTTCTCAGAAGCCTCTTGTTTCCTTCTTGCGTCGCGCTTCCC
                      ____________________________________________________________
consensus             TTTTCAGTTCTCAATTCTCTTCTCAGAAGCCTCTTGTTTCCTTCTTGCGTCGCGCTTCCC