Contig 000645:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019P07Sequence280000645 (5)gb|ACN31349.1|3e-19unknown [Zea mays]
JMFN009K22Sequence616000645 (5)ref|XP_009620036.1|9e-116PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596
JMSF010O04Sequence272000645 (5)ref|XP_009620036.1|1e-22PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596
JMSF024F23Sequence661000645 (5)ref|XP_009620036.1|6e-124PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596719000645 (5)ref|XP_009620036.1|7e-133PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis] ref|XP_009782596

Alignment

This contig is upended


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rJMFF019P07-                   TGAGCATTAAAAATCTCTAAACATTTGTCCACAATCCTTAATGGNNATAAT
                      ____________________________________________________________
consensus                      TGAGCATTAAAAATCTCTAAACATTTGTCCACAATCCTTAATGGNNATAAT
 
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rJMFF019P07-          AAAACAACAAAACTGCAAAACACAATGTTGGCGAAACATGGGAGGGAGCAGTTTGGCTTG
                      ____________________________________________________________
consensus             AAAACAACAAAACTGCAAAACACAATGTTGGCGAAACATGGGAGGGAGCAGTTTGGCTTG
 
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rJMFF019P07-          AGAAACTCTCTAACGGTTANCCTTGGCTACACGCTCAATCTCATCCTTCTTCTTGATTGC
rJMSF024F23-                     AACGGTTAGCCTTGGCTACACGCTCAATCTCATCCTTCTTCTTGATTGC
JMSF024F23+                                                           CTTCTTGATTGC
                      ____________________________________________________________
consensus             AGAAACTCTCTAACGGTTAGCCTTGGCTACACGCTCAATCTCATCCTTCTTCTTGATTGC
 
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rJMFF019P07-          ATAANTGTTTGAGGATCCCTTGGNAGCATTAATGANTTCATCANCAANGCATTCTGCTAT
rJMSF024F23-          ATAACTGTTTGAGGATCCCTTGGCAGCATTAATGAGTTCATCAGCAAGGCATTCTGCTAT
JMFN009K22+                               TGGCAGCATTAATGAGTTCATCAGCAAGGCATTCTGCTAT
JMSF024F23+           ATAACTGTTTGAGGATCCCTTGGCAGCATTAATGAGTTCATCAGCAAGGCATTCTGCTAT
                      ____________________________________________________________
consensus             ATAACTGTTTGAGGATCCCTTGGCAGCATTAATGAGTTCATCAGCAAGGCATTCTGCTAT
 
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rJMFF019P07-          TGNCTTTATGTTCCTAAAANNACTTTGGCGGGCACCTGATGTCAATAGG           
rJMSF024F23-          TGTCTTTATGTTCCTAAAAGCACTTTGGCGGGCACCTGATGTCAATAGGTAGATAGCCTG
JMFN009K22+           TGTCTTTATGTTCCTAAAAGCACTTTGGCGGGCACCTGATGTCAATAGGTAGATAGCCTG
JMSF024F23+           NGTCTTTATGTTCCTAAAAGCACTTTGGCGGGCACCTGATGTCAATAGGTAGATAGCCTG
                      ____________________________________________________________
consensus             TGTCTTTATGTTCCTAAAAGCACTTTGGCGGGCACCTGATGTCAATAGGTAGATAGCCTG
 
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rJMSF024F23-          GTTGACACGACGGAGTGGAGAAATATCAACAGCTTGACGCCTCACAACACCAGCTGACCC
JMFN009K22+           GTTGACACGACGGAGTGGAGAAATATCAACAGCTTGACGCCTCACAACACCAGCTGACCC
JMSF024F23+           GTTGACACGACGGAGTGGAGAAATATCAACAGCTTGACGCCTCACAACACCAGCTGACCC
                      ____________________________________________________________
consensus             GTTGACACGACGGAGTGGAGAAATATCAACAGCTTGACGCCTCACAACACCAGCTGACCC
 
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rJMSF024F23-          AATACGGGTAGCATCTTCTCTTGGTCCACTGTTGATGACAGCATCCACAATCACTTGGAT
JMFN009K22+           AATACGGGTAGCATCTTCTCTTGGTCCACTGTTGATGACAGCATCCACAATCACTTGGAT
JMSF024F23+           AATACGGGTAGCATCTTCTCTTGGTCCACTGTTGATGACAGCATCCACAATCACTTGGAT
                      ____________________________________________________________
consensus             AATACGGGTAGCATCTTCTCTTGGTCCACTGTTGATGACAGCATCCACAATCACTTGGAT
 
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rJMSF024F23-          TGGGTTTTGGTCAGTCAGCAAATGGATGATTTCCATAGCATGCTTCACAATGCGGACAGC
JMFN009K22+           TGGGTTTTGGTCAGTCAGCAAATGGATGATTTCCATAGCATGCTTCACAATGCGGACAGC
JMSF024F23+           TGGGTTTTGGTCAGTCAGCAAATGGATGATTTCCATAGCATGCTTCACAATGCGGACAGC
                      ____________________________________________________________
consensus             TGGGTTTTGGTCAGTCAGCAAATGGATGATTTCCATAGCATGCTTCACAATGCGGACAGC
 
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rJMSF024F23-          CATAAGCTTTTTACCATTGTTCCTTCCGTGCATCATCAATGAGTTAACCAACCTCTCCAC
JMFN009K22+           CATAAGCTTTTTACCATTGTTCCTTCCGTGCATCATCAATGAGTTAACCAACCTCTCCAC
JMSF024F23+           CATAAGCTTTTTACCATTGTTCCTTCCGTGCATCATCAATGAGTTAACCAACCTCTCCAC
                      ____________________________________________________________
consensus             CATAAGCTTTTTACCATTGTTCCTTCCGTGCATCATCAATGAGTTAACCAACCTCTCCAC
 
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rJMSF024F23-          AATAGGGCACTGGGCCTTCCTGAACCTCTTCTGTTGATACCTACCAGCAGTGTGGGGAGT
JMFN009K22+           AATAGGGCACTGGGCCTTCCTGAACCTCTTCTGTTGATACCTACCAGCAGTGTGGGGAGT
JMSF024F23+           AATAGGGCACTGGGCCTTCCTGAACCTCTTCTGTTGATACCTACCAGCAGTGTGGGGAGT
JMSF010O04+                                       TTCTGTTGATACCTACCAGCAGTGTGGGGAGT
                      ____________________________________________________________
consensus             AATAGGGCACTGGGCCTTCCTGAACCTCTTCTGTTGATACCTACCAGCAGTGTGGGGAGT
 
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rJMSF024F23-          GTAGGTAGGATGCTTACCAGATGTAGCAGTAATGTAATCATCAACAGAAAGGTCATTAAC
JMFN009K22+           GTAGGTAGGATGCTTACCAGATGTAGCAGTAATGTAATCATCAACAGAAAGGTCATTAAC
JMSF024F23+           GTAGGTAGGATGCTTACCAGATGTAGCAGTAATGTAATCATCAACAGAAAGGTCATTAAC
JMSF010O04+           GTAGGTAGGATGCTTACCAGATGTAGCAGTAATGTAATCATCAACAGAAAGGTCATTAAC
                      ____________________________________________________________
consensus             GTAGGTAGGATGCTTACCAGATGTAGCAGTAATGTAATCATCAACAGAAAGGTCATTAAC
 
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rJMSF024F23-          CTGCACATCATCGTAGCTCCATCGATTGAAGAGCAAGATATCGCTGCGAGCCTTTTCTTC
JMFN009K22+           CTGCACATCATCGTAGCTCCATCGATTGAAGAGCAAGATATCGCTGCGAGCCTTTTCTTC
JMSF024F23+           CTGCACATCATCGTAGCTCCATCGATTGAAGAGCAAGATATCGCTGCGAGCCTTTTCTTC
JMSF010O04+           CTGCACATCATCGTAGCTCCATCGATTGAAGAGCAAGATATCGCTGCGAGCCTTTTCTTC
                      ____________________________________________________________
consensus             CTGCACATCATCGTAGCTCCATCGATTGAAGAGCAAGATATCGCTGCGAGCCTTTTCTTC
 
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rJMSF024F23-          CTGA                                                        
JMFN009K22+           CTGAGGAAGAAGACTGGCCGGAGCCACCGGTACTGCTACTGCTTCAGCTTCCATCTTCGG
JMSF024F23+           CTGAGGAAGAAGACTGGCCGGAGCCACCGGTACTGCTACTGCTTCCGCTTCCATCTTCGG
JMSF010O04+           CTGAGGAAGAAGACTGGCCGGAGCCACCGGTACTGCTACTGCTTCCGCTTCCATCTTCGG
                      ____________________________________________________________
consensus             CTGAGGAAGAAGACTGGCCGGAGCCACCGGTACTGCTACTGCTTCCGCTTCCATCTTCGG
 
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JMFN009K22+           GGTTCTGCCGCTACTACAGCCGCGATCTCTCTCTCT                        
JMSF024F23+           GGTTCTGCCGCTACTACAGCCGCGATCTCTCTCTCTGTGAGGGGGAGT            
JMSF010O04+           GGTTCTGCCGCTACTACAGCCGCGATCTCTCTCTCTGTGAGGGGGAGTGGAGTTTGTAGC
                      ____________________________________________________________
consensus             GGTTCTGCCGCTACTACAGCCGCGATCTCTCTCTCTGTGAGGGGGAGTGGAGTTTGTAGC