Contig 000627:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF008P01-                                                                     T
                      ____________________________________________________________
consensus                                                                        T
 
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rJMSF008P01-          GGAGTTCATAGTGGTTGNGCNNTGTCATCCTCCACAAAAATCAGATTCTTTANCTAATAC
                      ____________________________________________________________
consensus             GGAGTTCATAGTGGTTGNGCNNTGTCATCCTCCACAAAAATCAGATTCTTTANCTAATAC
 
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JMFN025G09+                       GGGAAAGGTATGGAAAAGAAGAAATTTTCNATGGTAATTAGACATAGA
rJMSF008P01-          AATCTAAAACATGGGAAAGGTATGGAAAANAAGANATTTTTCNTGGTAATTAGACATAGA
                      ____________________________________________________________
consensus             AATCTAAAACATGGGAAAGGTATGGAAAAGAAGAAATTTTTCATGGTAATTAGACATAGA
 
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JMFN025G09+           CAAATGAAAGGCAGGCTCAGAAAGCAATGCTTCTCACTAGATCAACGGGTAGGATAACTA
rJMSF008P01-          CAAATGNAAGGCAGGCTCAGAAAGCAATGCTTCTCACTAGATCAACGGGTAGGATAACTA
                      ____________________________________________________________
consensus             CAAATGAAAGGCAGGCTCAGAAAGCAATGCTTCTCACTAGATCAACGGGTAGGATAACTA
 
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JMFN025G09+           TGTCTTCCTTCTGAGGCGCTTCCTCAGCTTCTGCAGTTTGTGCTTGTTCATCTTCCTCTT
rJMSF008P01-          TGTCTTCCTTCTGAGGCGCTTCCTCAGCTTCTGCAGTTTGTGCTTGTTCATCTTCCTCTT
                      ____________________________________________________________
consensus             TGTCTTCCTTCTGAGGCGCTTCCTCAGCTTCTGCAGTTTGTGCTTGTTCATCTTCCTCTT
 
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JMFN032F24+               TTCTTCTTCACACTGTCGGCCCACATTTTGGGAGATTCTGGGGACGTAACGCCAGC
JMFN025G09+           CCTCTTCTTCTTCACACTGTCGGCCCACATTTTGGGAGATTCTGGGGACGTAACGCCAGC
rJMSF008P01-          CCTCTTCTTCTTCACACTGTCGGCCCACATTTTGGGAGATTCTGGGGACGTAACGCCAGC
                      ____________________________________________________________
consensus             CCTCTTCTTCTTCACACTGTCGGCCCACATTTTGGGAGATTCTGGGGACGTAACGCCAGC
 
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JMFN032F24+           ATCCTCGGACGGAATGATGAACCCAGGCTGAGAAATTGGGTTTAAGAAATACTCAAAAGA
JMFN025G09+           ATCCTCGGACGGAATGATGAACCCAGGCTGAGAAATTGGGTTTAAGAAATACTCAAAAGA
rJMSF008P01-          ATCCTCGGACGGAATGATGAACCCAGGCTGAGAAATTGGGTTTAAGAAATACTCAAAAGA
                      ____________________________________________________________
consensus             ATCCTCGGACGGAATGATGAACCCAGGCTGAGAAATTGGGTTTAAGAAATACTCAAAAGA
 
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JMFN032F24+           AAAGGTTGGGTAGAACCGCGAGCAAGCGTTCGGATTTGAATCTTCTCTTTTGGGTTCGAG
JMFN025G09+           AAAGGTTGGGTAGAACCGCGAGCAAGCGTTCGGATTTGAATCTTCTCTTTTGGGTTCGAG
rJMSF008P01-          AAAGGTTGGGTAGAACCGCGAGCAAGCGTTCGGATTTGAATCTTCTCTTTTGGGTTCNAG
JMSF008P01+                                                                     AG
                      ____________________________________________________________
consensus             AAAGGTTGGGTAGAACCGCGAGCAAGCGTTCGGATTTGAATCTTCTCTTTTGGGTTCGAG
 
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JMFN032F24+           AAAGATCGGGTGTTGGACTAGTCTACCGTCGAAGAGAGGCGGAAGGAGGGGCGGTGGTGG
JMFN025G09+           AAAGATCGGGTGTTGGACTAGTCTACCGTCGAAGAGAGGCGGAAGGAGGGGCGGTGGTGG
rJMSF008P01-          AAAGATCGGGTGTTGGACTAGTCTACCGTCGAAGAGAGGCGGAAGGAGGGGCGGTGGTGG
JMSF008P01+           AAAGATCGGGTGTTGGACTAGTCTACCGTCGAAGAGAGGCGGAAGGAGGGGCGGTGGTGG
                      ____________________________________________________________
consensus             AAAGATCGGGTGTTGGACTAGTCTACCGTCGAAGAGAGGCGGAAGGAGGGGCGGTGGTGG
 
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JMFN032F24+           TGGCGGAGTTGCGGCGAGGATCTGTGTCTGGGATTTGCTGAACTGAGTGATGAGTGTTGA
JMFN025G09+           TGGCGGAGTTGCGGCGAGGATCTGTGTCTGGGATTTGCTGAACTGAGTGATGAGTGTTGA
rJMSF008P01-          TGGCGGAGTTGCNGCGAGGATCTGTGTCTGGGATTTGCTGAACTGAGTGATGAGTGTTGA
JMSF008P01+           TGGCGGAGTTGCGGCGAGGATCTGTGTCTGGGATTTGCTGAACTGAGTGATGAGTGTTGA
                      ____________________________________________________________
consensus             TGGCGGAGTTGCGGCGAGGATCTGTGTCTGGGATTTGCTGAACTGAGTGATGAGTGTTGA
 
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JMFN032F24+           GGCAGATTGAGATCGGTTTCTCAGAACCTTTCCCAGAAAAGAAGCCATTTTGATTCGGCG
JMFN025G09+           GGCAGATTGAGATCGGTTTCTCAGAACCTTTCCCAGAAAAGAAGCCATTTTGATTCGGCG
rJMSF008P01-          GGCAGATTGAGATCGGTTTCTCAGAACCTTTCCCAGAAAAGAAGCCATTTTGATTCGGCG
JMSF008P01+           GGCAGATTGAGATCGGTTTCTCAGAACCTTTCCCAGAAAAGAAGCCATTTTGATTCGGCG
                      ____________________________________________________________
consensus             GGCAGATTGAGATCGGTTTCTCAGAACCTTTCCCAGAAAAGAAGCCATTTTGATTCGGCG
 
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JMFN032F24+           GAGTGCACAATTGCGATTTGCAAAGCTCAGCCAAAAAAAAAGAAAGAAAGATGAACTGCT
JMFN025G09+           GAGTGCACAATTGCGATTTGCAAAGCTCAGCC-AAAAAAAAGAAAGAAAGATGAACTGCT
rJMSF008P01-          GAGTGCACAATTGCGATTTGCAAAGCTCAGCC-AAAAAAAAGAAAGAAAGATGAACTGCT
JMSF008P01+           GAGTGCACAATTGCGATTTGCAAAGCTCAGCC-AAAAAAAAGAAAGAAAGATGAACTGCT
                      ____________________________________________________________
consensus             GAGTGCACAATTGCGATTTGCAAAGCTCAGCC-AAAAAAAAGAAAGAAAGATGAACTGCT
 
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JMFN032F24+           TACTTGATTAGGGCTCGTTGAG                                      
JMFN025G09+           TACTTGATTAGGGCTCGTTGAGGGTTTAGATTCTACGGGCTA                  
rJMSF008P01-          TACTTGATTAGGGCTCGTTGAGGGTTTAGATTCTACGGGCTACCGAATTGCA        
JMSF008P01+           TACTTGATTAGGGCTCGTTGAGGGTTTAGATTCTACGGGCTACCGAATTGCAATTCAATC
                      ____________________________________________________________
consensus             TACTTGATTAGGGCTCGTTGAGGGTTTAGATTCTACGGGCTACCGAATTGCAATTCAATC