Contig 000626:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008M21Sequence321000626 (3)ref|XP_009613154.1|8e-28PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2-like [Nico764021379ref|XP_009791821.1|3e-89PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2-like [Nico
JMSF047D09Sequence720000626 (3)ref|XP_009791821.1|7e-137PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2-like [Nico792000626 (3)ref|XP_009769753.1|1e-94PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2-like [Nico

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047D09-                                                     AATCATGTGTCTATGGA
                      ____________________________________________________________
consensus                                                        AATCATGTGTCTATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047D09-          ACATCATCTCTTTCTTGAGCTGTTGTGTTTACATCTTTCAACTGTGAAGTACATGTCAGA
                      ____________________________________________________________
consensus             ACATCATCTCTTTCTTGAGCTGTTGTGTTTACATCTTTCAACTGTGAAGTACATGTCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047D09-          TCACTTCTTCTAAAAACATGAGTTCTATGGTTGGCATAGCCAGAAAAATAATTCTTGCCA
                      ____________________________________________________________
consensus             TCACTTCTTCTAAAAACATGAGTTCTATGGTTGGCATAGCCAGAAAAATAATTCTTGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047D09-          TCTTTAACACAGAAACTCCCCAACAGAAGTCATCATGTGGTGTTGCGACGCTTTGTAATC
                      ____________________________________________________________
consensus             TCTTTAACACAGAAACTCCCCAACAGAAGTCATCATGTGGTGTTGCGACGCTTTGTAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047D09-          TTGACTGCCGGCTGTGAAGTCAAGTGACACCTGTCCCAACGAAATTTCCCTAATCGGTTT
                      ____________________________________________________________
consensus             TTGACTGCCGGCTGTGAAGTCAAGTGACACCTGTCCCAACGAAATTTCCCTAATCGGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047D09-          TCTTCTCCTTCTTTGGGTTTGGCTTCTGATACAGGATAATTTGGCTCAAGAGGGTTCCGT
JMSF047D09+                                                               GGTTCCGT
                      ____________________________________________________________
consensus             TCTTCTCCTTCTTTGGGTTTGGCTTCTGATACAGGATAATTTGGCTCAAGAGGGTTCCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047D09-          TCATCAGTACACCGAGCACAGAACCCATGGCAACGCTTGTTGGAGCCTTTTCTTGGATGC
JMSF047D09+           TCATCAGTACACCGAGCACAGAACCCATGGCAACGCTTGTNGGAGCCTTTTCTTGGATGC
                      ____________________________________________________________
consensus             TCATCAGTACACCGAGCACAGAACCCATGGCAACGCTTGTTGGAGCCTTTTCTTGGATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047D09-          TTGTAAATACTCTAACCATTGAACCTCCAAAGTTCATAAAAAACGTTAAGAAGCTCAACT
JMSF047D09+           TTGTAAATACTCTAACCATTGAACCTCCAAAGTTCATAAAAAACGTTAAGAAGCTCAACT
                      ____________________________________________________________
consensus             TTGTAAATACTCTAACCATTGAACCTCCAAAGTTCATAAAAAACGTTAAGAAGCTCAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047D09-          GTCCAGTACTCTTGTTCTTAAAGTTCGCCCATATCTGTGGAATTCTTGCAAAAAGAAAAA
JMSF047D09+           GTCCAGTACTCTTGTTCTTAAAGTTCGCCCATATCTGTGGAATTCTTGCAAAAAGAAAAA
                      ____________________________________________________________
consensus             GTCCAGTACTCTTGTTCTTAAAGTTCGCCCATATCTGTGGAATTCTTGCAAAAAGAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047D09-          TTGCATGCTGGGAAGCATATAGAGCCTCGAAAAGGATGGGATCAACTTTGCCTGCTAAAA
JMSF047D09+           TTGCATGCTGGGAAGCATATAGAGCCTCGAAAAGGATGGGATCAACTTTGCCTGCTAAAA
                      ____________________________________________________________
consensus             TTGCATGCTGGGAAGCATATAGAGCCTCGAAAAGGATGGGATCAACTTTGCCTGCTAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047D09-          TAGTTGGCGCAATACCACAGTATAGTAATGCTATCATTCATGTCTTTGTGCCCAAAGGTT
JMSF047D09+           TAGTTGGCGCAATACCACAGTATAGTAATGCTATCATTCATGTCTTTGTGCCCAAAGGTT
                      ____________________________________________________________
consensus             TAGTTGGCGCAATACCACAGTATAGTAATGCTATCATTCATGTCTTTGTGCCCAAAGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047D09-          GAGAAAAATAGTAGATGGTTGAAACTAAGATTATTGCTTGGACCAAGAGAAATGCATACT
JMSF047D09+           GAGAAAAATAGTAGATGGTTGAAACTAAGATTATTGCTTGGACCAAGAGAAATGCATACT
                      ____________________________________________________________
consensus             GAGAAAAATAGTAGATGGTTGAAACTAAGATTATTGCTTGGACCAAGAGAAATGCATACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047D09-          CGCCATAAGCTGAAAACGGTAGCCCTTTGTGAAGACAATATGCCAAAGCAATGGTATAAC
JMSF047D09+           CGCCATAAGCTGAAAACGGTAGCCCTTTGTGAAGACAATATGCCAAAGCAATGGTATAAC
                      ____________________________________________________________
consensus             CGCCATAAGCTGAAAACGGTAGCCCTTTGTGAAGACAATATGCCAAAGCAATGGTATAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047D09-          CAANCTACTTCAAGTTCAAAGGCTACCACACTGAGCCCACTAACACTT            
JMSF047D09+           CAA-CTACTTCAAGTTCAAAGGCTACCACACTGAGCCCACTAACACTTCTGTGTCGCAAA
JMSF008M21+                                                                      A
                      ____________________________________________________________
consensus             CAANCTACTTCAAGTTCAAAGGCTACCACACTGAGCCCACTAACACTTCTGTGTCGCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047D09+           ATCTTTAATATCTGCGGAAGCTTGACGGTGGTGGAGGCAGCCACGATGGCGTAGCCCAAG
JMSF008M21+           ATCTTTAATATCTGAGGAAGCTTGACAGTCATGGAGGCGGCGACTATAGCGTAGCCCAGT
                      ____________________________________________________________
consensus             ATCTTTAATATCTGCGGAAGCTTGACGGTGGTGGAGGCGGCGACTATGGCGTAGCCCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047D09+           AGCTTCGATATTAACGGAAGCAAACAGTCCTTCGCTGGGAATTCACCCTTGCTAAGAGAT
JMSF008M21+           AGCTTTGATATTAATGGAAGCAAACAGTCCTTCTCGGGGAATTCGCCTTTGCTAAGAGAT
                      ____________________________________________________________
consensus             AGCTTTGATATTAATGGAAGCAAACAGTCCTTCTCTGGGAATTCGCCTTTGCTAAGAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047D09+           CCCAGCGCGCAACTAAAGTCCATTCCAAGAAACTTCAACTCCA                 
JMSF008M21+           CCAAACGCACAGCTAAAGTCCATCCCAAGAAACTTCATCTCCATTGCGGGTCACCTGAAG
                      ____________________________________________________________
consensus             CCCAGCGCGCAGCTAAAGTCCATTCCAAGAAACTTCATCTCCATTGCGGGTCACCTGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008M21+           ACACCCCAATCTTCAGTCTCCGAACTTCAAAGAAAGATTGAACCTTTCGAATCTGCAACG
                      ____________________________________________________________
consensus             ACACCCCAATCTTCAGTCTCCGAACTTCAAAGAAAGATTGAACCTTTCGAATCTGCAACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008M21+           AAACAATAATGAAGGGGAAGAACGCTTCAGAGCGCGGCAAATTATATATACTTCTCCTTC
                      ____________________________________________________________
consensus             AAACAATAATGAAGGGGAAGAACGCTTCAGAGCGCGGCAAATTATATATACTTCTCCTTC