| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN004L08 | Sequence | 448 | 000620 (10) | ref|XP_011099736.1| | 4e-55 | PREDICTED: photosystem I reaction center subunit N, chloroplastic [Sesamum indi | |||||
| JMFN035I04 | Sequence | 626 | 000620 (10) | ref|XP_004244730.1| | 2e-70 | PREDICTED: photosystem I reaction center subunit N, chloroplastic [Solanum lyco | |||||
| JMSF002P16 | Sequence | 194 | 000620 (10) | ref|XP_004244730.1| | 4e-04 | PREDICTED: photosystem I reaction center subunit N, chloroplastic [Solanum lyco | 598 | 000620 (10) | ref|XP_004244730.1| | 1e-70 | PREDICTED: photosystem I reaction center subunit N, chloroplastic [Solanum lyco |
| JMSF003C08 | Sequence | 289 | 000620 (10) | ref|XP_004244730.1| | 1e-05 | PREDICTED: photosystem I reaction center subunit N, chloroplastic [Solanum lyco | 659 | 000620 (10) | ref|XP_004244730.1| | 2e-70 | PREDICTED: photosystem I reaction center subunit N, chloroplastic [Solanum lyco |
| JMSF008E05 | Sequence | 460 | 000620 (10) | ref|XP_004244730.1| | 6e-31 | PREDICTED: photosystem I reaction center subunit N, chloroplastic [Solanum lyco | 689 | 000620 (10) | ref|XP_004244730.1| | 3e-70 | PREDICTED: photosystem I reaction center subunit N, chloroplastic [Solanum lyco |
| JMSF042A06 | Sequence | 675 | 000620 (10) | ref|XP_004244730.1| | 3e-70 | PREDICTED: photosystem I reaction center subunit N, chloroplastic [Solanum lyco | 626 | 000620 (10) | ref|XP_004244730.1| | 2e-70 | PREDICTED: photosystem I reaction center subunit N, chloroplastic [Solanum lyco |
This contig is upended
. : . : . : . : . : . :
JMFN035I04+ CATGAAAGAATACG
rJMSF003C08- TAGATTGTGATTACAGATTTTCCATGAAAGAATAGG
rJMSF008E05- TGATTACAGATTTTCCATGAAAGAATAGG
____________________________________________________________
consensus TAGATTGTGATTACAGATTTTCCATGAAAGAATAGG
. : . : . : . : . : . :
JMFN004L08+ CACACTT
JMFN035I04+ TGCATGTTCCATTATGAAAGGAAGAGTATATAAATACATACATTCTTAGCTTACACACTT
rJMSF042A06- TTCCATTATGAAAGGAAGAGTATATAAATACATACATTCTTAGCTTACACACTT
rJMSF002P16- GTATATAAATACATACATTCTTAGCTTACACACTT
JMSF042A06+ CACACTT
rJMSF003C08- TACATGTTCCATTATGAAAGGAAGAGTATATAAATACATACATTCTTAGCTTACACACTT
rJMSF008E05- TACATGTTCCATTATGAAAGGAAGAGTATATAAATACATACATTCTTAGCTTACACACTT
____________________________________________________________
consensus TACATGTTCCATTATGAAAGGAAGAGTATATAAATACATACATTCTTAGCTTACACACTT
. : . : . : . : . : . :
JMFN004L08+ CACCATTTCCAGAAAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCCAAC
JMFN035I04+ CACCATTTCCAGAAAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCCAAC
rJMSF042A06- CACCATTTCCAGAAAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCCAAC
rJMSF002P16- CACCATTTCCAGAAAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCCAAC
JMSF042A06+ CACCATTTCCAGAAAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCCAAC
rJMSF003C08- CACCATTTCCAGAAAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCCAAC
rJMSF008E05- CACCATTTCCAGAAAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCCAAC
____________________________________________________________
consensus CACCATTTCCAGAAAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCCAAC
. : . : . : . : . : . :
JMFN004L08+ TCCAAGTCATCACTGATGAATGGCACTTTCTTTTGTTTGGCAAGGTCTTGGCAGCCAGTG
JMFN035I04+ TCCAAGTCATCACTGATGAATGGCACTTTCTTTTGTTTGGCAAGGTCTTGGCAGCCAGTG
rJMSF042A06- TCCAAGTCATCACTGATGAATGGCACTTTCTTTTGTTTGGCAAGGTCTTGGCAGCCAGTG
rJMSF002P16- TCCAAGTCATCACTGATGAATGGCACTTTCTTTTGTTTGGCAAGGTCTTGGCAGCCAGTG
JMSF042A06+ TCCAAGTCATCACTGATGAATGGCACTTTCTTTTGTTTGGCAAGGTCTTGGCAGCCAGTG
rJMSF003C08- TCCAAGTCATCACTGATGAATGGCACTTTCTTTTGTTTGGCAAGGTCTTGGCAGCCAGTG
rJMSF008E05- TCCAAGTCATCACTGATGAATGGCACTTTCTTTTGTTTGGCAAGGTCTTGGCAGCCAGTG
____________________________________________________________
consensus TCCAAGTCATCACTGATGAATGGCACTTTCTTTTGTTTGGCAAGGTCTTGGCAGCCAGTG
. : . : . : . : . : . :
JMFN004L08+ AAGTTTTCAGGGAACTTGCAAGTGCCAAACTGAACAGTGTATGCTCTTGCAAAGTTTGCA
JMFN035I04+ AAGTTTTCAGGGAACTTGCAAGTGCCAAACTGAACAGTGTATGCTCTTGCAAAGTTTGCA
rJMSF042A06- AAGTTTTCAGGGAACTTGCAAGTGCCAAACTGAACAGTGTATGCTCTTGCAAAGTTTGCA
rJMSF002P16- AAGTTTTCAGGGAACTTGCAAGTGCCAAACTGAACAGTGTATGCTCTTGCAAAGTTTGCA
JMSF042A06+ AAGTTTTCAGGGAACTTGCAAGTGCCAAACTGAACAGTGTATGCTCTTGCAAAGTTTGCA
rJMSF003C08- AAGTTTTCAGGGAACTTGCAAGTGCCAAACTGAACAGTGTATGCTCTTGCAAAGTTTGCA
rJMSF008E05- AAGTTTTCAGGGAACTTGCAAGTGCCAAACTGAACAGTGTATGCTCTTGCAAAGTTTGCA
JMSF008E05+ AGTGCCAAACTGAACAGTGTATGCTCTTGCAAAGTTTGCA
____________________________________________________________
consensus AAGTTTTCAGGGAACTTGCAAGTGCCAAACTGAACAGTGTATGCTCTTGCAAAGTTTGCA
. : . : . : . : . : . :
JMFN004L08+ CCACTTGTGGCCAGTCTCTTCTTGTCATTCAATTCCTTGTTGGCTTTGCTTTTCTCAAGA
JMFN035I04+ CCACTTGTGGCCAGTCTCTTCTTGTCATTCAATTCCTTGTTGGCTTTGCTTTTCTCAAGA
rJMSF042A06- CCACTTGTGGCCAGTCTCTTCTTGTCATTCAATTCCTTGTTGGCTTTGCTTTTCTCAAGA
rJMSF002P16- CCACTTGTGGCCAGTCTCTTCTTGTCATTCAATTCCTTGTTGGCTTTGCTTTTCTCAAGA
JMSF042A06+ CCACTTGTGGCCAGTCTCTTCTTGTCATTCAATTCCTTGTTGGCTTTGCTTTTCTCAAGA
rJMSF003C08- CCACTTGTGGCCAGTCTCTTCTTGTCATTCAATTCCTTGTTGGCTTTGCTTTTCTCAAGA
rJMSF008E05- CCACTTGTGGCCAGTCTCTTCTTGTCATTCAATTCCTTGTTGGCTTTGCTTTTCTCAAGA
JMSF008E05+ CCACTTGTGGCCAGTCTCTTCTTGTCATTCAATTCCTTGTTGGCTTTGCTTTTCTCAAGA
____________________________________________________________
consensus CCACTTGTGGCCAGTCTCTTCTTGTCATTCAATTCCTTGTTGGCTTTGCTTTTCTCAAGA
. : . : . : . : . : . :
JMFN004L08+ TAGTCCTCAATGACACCAGCATTTGCAGAAGAAGAAGTGGCAAAAAGGGCAGCTGCAAGG
JMFN035I04+ TAGTCCTCAATGACACCAGCATTTGCAGAAGAAGAAGTGGCAAAAAGGGCAGCTGCAAGG
rJMSF042A06- TAGTCCTCAATGACACCAGCATTTGCAGAAGAAGAAGTGGCAAAAAGGGCAGCTGCAAGG
rJMSF002P16- TAGTCCTCAATGACACCAGCATTTGCAGAAGAAGAAGTGGCAAAAAGGGCAGCTGCAAGG
JMSF042A06+ TAGTCCTCAATGACACCAGCATTTGCAGAAGAAGAAGTGGCAAAAAGGGCAGCTGCAAGG
JMSF003C08+ AAGTGGCAAAAAGGGCAGCTGCAAGG
rJMSF003C08- TAGTCCTCAATGACACCAGCATTTGCAGAAGAAGAAGTGGCAAAAAGGGCAGCTGCAAGG
rJMSF008E05- TAGTCCTCAATGACACCAGCATTTGCAGAAGAAGAAGTGGCAAAAAGGGCAGCTGCAAGG
JMSF008E05+ TAGTCCTCAATGACACCAGCATTTGCAGAAGAAGAAGTGGCAAAAAGGGCAGCTGCAAGG
____________________________________________________________
consensus TAGTCCTCAATGACACCAGCATTTGCAGAAGAAGAAGTGGCAAAAAGGGCAGCTGCAAGG
. : . : . : . : . : . :
JMFN004L08+ CCAAGAAGGGCAGCTCTTCTGCCATTAATCCCATTTGCAGTCTCCA
JMFN035I04+ CCAAGAAGGGCAGCTCTTCTGCCATTAATCCCATTTGCAGTCTCCACTACAGATCTCACT
rJMSF042A06- CCAAGAAGGGCAGCTCTTCTGCCATTAATCCCATTTGCAGTCTCCACTACAGATCTCACT
rJMSF002P16- CCAAGAAGGGCAGCTCTTCTGCCATTAATCCCATTTGCAGTCTCCACTACAGATCTCACT
JMSF042A06+ CCAAGAAGGGCAGCTCTTCTGCCATTAATCCCATTTGCAGTCTCCACTACAGATCTCACT
JMSF003C08+ CCAAGAAGGGCAGCTCTTCTGCCATTAATCCCATTTGCAGTCTCCACTACAGATCTCACT
rJMSF003C08- CCAAGAAGGGCAGCTCTTCTGCCATTAATCCCATTTGCAGTCTCCACTACAGATCTCACT
rJMSF008E05- CCAAGAAGGGCAGCTCTTCTGCCATTAATCCCATTTGCAGTCTCCACTACAGATCTCACT
JMSF008E05+ CCAAGAAGGGCAGCTCTTCTGCCATTAATCCCATTTGCAGTCTCCACTACAGATCTCACT
____________________________________________________________
consensus CCAAGAAGGGCAGCTCTTCTGCCATTAATCCCATTTGCAGTCTCCACTACAGATCTCACT
. : . : . : . : . : . :
JMFN035I04+ TCTTGTTTCTGACACTTGATTGCGGCAGGGAGCTTGGAAGAAGAAGTAGTTGAGATTGGG
rJMSF042A06- TCTTGTTTCTGACACTTGATTGCGGCAGGGAGCTTGGAAGAAGAAGTAGTTGAGATTGGG
rJMSF002P16- TCTTGTTTCTGACACTTGATTGCGGCAGGGAGCTTGGAAGAAGAAGTAGTTGAGATTGGG
JMSF042A06+ TCTTGTTTCTGACACTTGATTGCGGCAGGGAGCTTGGAAGAAGAAGTAGTTGAGATTGGG
JMSF003C08+ TCTTGTTTCTGACACTTGATTGCGGCAGGGAGCTTGGAAGAAGAAGTAGTTGAGATTGGG
JMSF002P16+ TGACACTTGATTGCGGCAGGGAGCTTGGAAGAAGAAGTAGTTGAGATTGGG
rJMSF003C08- TCTTGTTTCTGACACTTGATTGCGGCAGGGAGCTTGGAAGAAGAAGTAGTTGAGATTGGG
rJMSF008E05- TCTTGTTTCTGACACTTGATTGCGGCAGGGAGCTTGGAAGAAGAAGTAGTTGAGATTGGG
JMSF008E05+ TCTTGTTTCTGACACTTGATTGCGGCAGGGAGCTTGGAAGAAGAAGTAGTTGAGATTGGG
____________________________________________________________
consensus TCTTGTTTCTGACACTTGATTGCGGCAGGGAGCTTGGAAGAAGAAGTAGTTGAGATTGGG
. : . : . : . : . : . :
JMFN035I04+ GTTGCCGCCATTGAAGCATGCTTTGCGATCAGCTCAGATGAAGCAGCACCTGATAGGGCA
rJMSF042A06- GTTGCCGCCATTGAAGCATGCTTTGCGATCAGCTCAGATGAAGCAGCACCTGATAGGGCA
rJMSF002P16- GTTGCCGCCATTGAAGCATGCTTTGCGATCAGCTCAGATGAAGCAGCACCTGATAGGGCA
JMSF042A06+ GTTGCCGCCATTGAAGCATGCTTTGCGATCAGCTCAGATGAAGCAGCACCTGATAGGGCA
JMSF003C08+ GTTGCCGCCATTGAAGCATGCTTTGCGATCAGCTCAGATGAAGCAGCACCTGATAGGGCA
JMSF002P16+ GTTGCCGCCATTGAAGCATGCTTTGCGATCAGCTCAGATGAAGCAGCACCTGATAGGGCA
rJMSF003C08- GTTGCCGCCATTGAAGCATGCTTTGCGATCAGCTCAGATGAAGCAGCACCTGATAGGGCA
rJMSF008E05- GTTGCCGCCATTGAAGCATGCTTTGCGATCAGCTCAGATGAAGCAGCACCTGATAGGGCA
JMSF008E05+ GTTGCCGCCATTGAAGCATGCTTTGCGATCAGCTCAGATGAAGCAGCACCTGATAGGGCA
____________________________________________________________
consensus GTTGCCGCCATTGAAGCATGCTTTGCGATCAGCTCAGATGAAGCAGCACCTGATAGGGCA
. : . : . : . : . : . :
JMFN035I04+ TAGCTGCTGCATGCCAACACACTAGAGTTCGTGGCAGCCATTGTTGCTAGCTAGCTGCTA
rJMSF042A06- TAGCTGCTGCATGCCAACACACTAGAGTTCGTGGCAGCCATTGTTGCTAGCTAGCTGCTA
rJMSF002P16- TAGCTGCTGCATGCCAACACACTAGAGTTCGTGGCAGCCATTGTTGCTAGCTAGCTGCTA
JMSF042A06+ TAGCTGCTGCATGCCAACACACTAGAGTTCGTGGCAGCCATTGTTGCTAGCTAGCTGCTA
JMSF003C08+ TAGCTGCTGCATGCCAACACACTAGAGTTCGTGGCAGCCATTGTTGCTAGCTAGCTGCTA
JMSF002P16+ TAGCTGCTGCATGCCAACACACTAGAGTTCGTGGCAGCCATTGTTGCTAGCTAGCTGCTA
rJMSF003C08- TAGCTGCTGCATGCCAACACACTAGAGTTCGTGGCAGCCATTGTTGCTAGCTAGCTGCTA
rJMSF008E05- TAGCTGCTGCATGCCAACACACTAGAGTTCGTGGCAGCCATTGTTGCTAGCTAGCTGCTA
JMSF008E05+ TAGCTGCTGCATGCCAACACACTAGAGTTCGTGGCAGCCATTGTTGCTAGCTAGCTGCTA
____________________________________________________________
consensus TAGCTGCTGCATGCCAACACACTAGAGTTCGTGGCAGCCATTGTTGCTAGCTAGCTGCTA
. : . : . : . : . : . :
JMFN035I04+ TTTGGAGAATGA
rJMSF042A06- TTTGGAGAATGAATTAATTCTTC
rJMSF002P16- TTTGGAGAATGAATTAATTCTTC
JMSF042A06+ TTTGGAGAATGAATTAATTCTTC
JMSF003C08+ TTTGGAGAATGAATTAATTCTTC
JMSF002P16+ TTTGGAGAATGAATTAATTCTTC
rJMSF003C08- TTTGGAGAATGAATTAATTCTTC
rJMSF008E05- TTTGGAGAATGAATTAATTCTTACCTGGTATTTTGGAGAAAGCAAAAATAAACTAGATCC
JMSF008E05+ TTTGGAGAATGAATTAATTCTTACCTGGTATTTTGGAGAAAGCAAAAATAAACTAGATCC
____________________________________________________________
consensus TTTGGAGAATGAATTAATTCTTCCCTGGTATTTTGGAGAAAGCAAAAATAAACTAGATCC