Contig 000614:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS120E09+                                                                   GCCT
                      ____________________________________________________________
consensus                                                                     GCCT
 
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JMFS120E09+           CCTTTCAAATAATAGAACAATTCTCGAGCCCTATCATAAACACTAGTCAATGACCCCAAA
                      ____________________________________________________________
consensus             CCTTTCAAATAATAGAACAATTCTCGAGCCCTATCATAAACACTAGTCAATGACCCCAAA
 
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JMFS120E09+           TCAGGCACAAGAACCCTTTCATCCTTCTTCTCTGCCCCAGCAAAATAAGACAGGCCACCT
JMSF023M10+                                            GCCCCAGCAAAATAAGACAGGCCACCT
                      ____________________________________________________________
consensus             TCAGGCACAAGAACCCTTTCATCCTTCTTCTCTGCCCCAGCAAAATAAGACAGGCCACCT
 
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JMFS120E09+           AATCTCCCTTTACCAAAACCAAAGATTCCATGTACCAGAACAATGGGAGACAAATCTTTG
JMSF023M10+           AATCTCCCTTTACCAAAACCAAAGATTCCATGTACCAGAACAATGGGAGACAAATCTTTG
                      ____________________________________________________________
consensus             AATCTCCCTTTACCAAAACCAAAGATTCCATGTACCAGAACAATGGGAGACAAATCTTTG
 
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JMFS120E09+           GAGCTGGTTGTCTTGTTTGACTCTTCTGCTCTCAACCCATTCTCCAGATTGGGCTTGAAA
JMSF023M10+           GAGCTGGTTGTCTTGTTTGACTCTTCTGCTCTCAACCCATTCTCCAGATTGGGCTTGAAA
                      ____________________________________________________________
consensus             GAGCTGGTTGTCTTGTTTGACTCTTCTGCTCTCAACCCATTCTCCAGATTGGGCTTGAAA
 
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JMFS120E09+           AACCAATCACTCAAGGCCAGAGAGAGATCACCAGCCACAGCTGTGCTGAATATGTAAAAC
JMSF023M10+           AACCAATCACTCAAGGCCAGAGAGAGATCACCAGCCACAGCTGTGCTGAATATGTAAAAC
                      ____________________________________________________________
consensus             AACCAATCACTCAAGGCCAGAGAGAGATCACCAGCCACAGCTGTGCTGAATATGTAAAAC
 
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JMFS120E09+           CCATATGCCAAATGAACCACGGAGGTCACGAAAAGCTCTGCTAATTGCAGTGATAGTATC
JMSF023M10+           CCATATGCCAAATGAACCACGGAGGTCACGAAAAGCTCTGCTAATTGCAGTGATAGTATC
                      ____________________________________________________________
consensus             CCATATGCCAAATGAACCACGGAGGTCACGAAAAGCTCTGCTAATTGCAGTGATAGTATC
 
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JMFS120E09+           CCCCATCTTATCATTTTCATAAAATCCCAAAGATATATTTGCTTATTATCCCAGAAAGCC
JMSF023M10+           CCCCATCTTATCATTTTCATAAAATCCCAAAGATATATTTGCTTATTATCCCAGAAAGCC
                      ____________________________________________________________
consensus             CCCCATCTTATCATTTTCATAAAATCCCAAAGATATATTTGCTTATTATCCCAGAAAGCC
 
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JMFS120E09+           TTCTTCTAGACAAGAGAAGAAGACTCGTTGGGACAGAAACTCTATATCCGTCAGCAGAAA
JMSF023M10+           TTCTTCTAGACAAGAGAAGAAGACTCGTTGGGACAGAAACTCTATATCCGTCAGCAGAAA
JMSF007M11+              TTCTAGACAAGAGAAGAAGACTCGTTGGGACAGAAACTCTATATCCGTCAGCAGAAA
                      ____________________________________________________________
consensus             TTCTTCTAGACAAGAGAAGAAGACTCGTTGGGACAGAAACTCTATATCCGTCAGCAGAAA
 
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JMFS120E09+           ATGAAATGGAAATGGAAATGGAAGACGCAACTCGGAATCCACCAAACCCCCCCAATAATT
JMSF023M10+           ATGAAATGGAAATGGAAATGGAAGACGCAACTCGGAATCCACCAAACCCCCCCAATAATT
JMSF007M11+           ATGAAATGGAAATGGAAATGGAAGACGCAACTCGGAATCCACCAAACCCCCCCAATAATT
                      ____________________________________________________________
consensus             ATGAAATGGAAATGGAAATGGAAGACGCAACTCGGAATCCACCAAACCCCCCCAATAATT
 
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JMFS120E09+           CAACTTTCAATTCAAGTTTCTCCAAAGGGTTGAAGTTGAGCCTCGAAAGAATGGGCAGAA
JMSF023M10+           CAACTTTCAATTCAAGTTTCTCCAAAGGGTTGAAGTTGAGCCTCGAAAGAATGGGCAGAA
JMSF007M11+           CAACTTTCAATTCAAGTTTCTCCAAAGGGTTGAAGTTGAGCCTCGAAAGAATGGGCAGAA
                      ____________________________________________________________
consensus             CAACTTTCAATTCAAGTTTCTCCAAAGGGTTGAAGTTGAGCCTCGAAAGAATGGGCAGAA
 
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JMFS120E09+           AAGCGAGGAATTTCGTGA                                          
JMSF023M10+           AAGCGAGGAATTTCGTGACCCCCTCCCTACCCTGTGAATTTCAAATGGAGTCGTTTGCTC
JMSF007M11+           AAGCGAGGAATTTCGTGACCCCCTCCCTACCCTGTGAATTTCAAATGGAGTCGTTTGCTC
                      ____________________________________________________________
consensus             AAGCGAGGAATTTCGTGACCCCCTCCCTACCCTGTGAATTTCAAATGGAGTCGTTTGCTC
 
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JMSF023M10+           CTATGGGTAGAAGAAAGGGGAAACAAATTTCTCAATTTTCCACAAATTTCTCGTT     
JMSF007M11+           CTATGGGTAGAAGAAAGGGGAAACAAATTTCTCAATTTTCCACAAATTTCTCGTTGGCCC
                      ____________________________________________________________
consensus             CTATGGGTAGAAGAAAGGGGAAACAAATTTCTCAATTTTCCACAAATTTCTCGTTGGCCC