Contig 000607:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015A11Sequence423000607 (11)ref|XP_009608415.1|1e-22PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Nicotiana tomentosiformis]670000607 (11)ref|XP_009608415.1|7e-41PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Nicotiana tomentosiformis]
JMSF006O06Sequence304000607 (11)ref|XP_009608415.1|6e-06PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Nicotiana tomentosiformis]237016011
JMSF020A06Sequence686000607 (11)ref|XP_009608415.1|3e-61PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Nicotiana tomentosiformis]644000607 (11)ref|XP_009608415.1|7e-59PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Nicotiana tomentosiformis]
JMSF021M08Sequence653000607 (11)ref|XP_009608415.1|2e-61PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Nicotiana tomentosiformis]639000607 (11)ref|XP_009608415.1|1e-56PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Nicotiana tomentosiformis]
JMSF033E17Sequence686000607 (11)ref|XP_009608415.1|2e-60PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Nicotiana tomentosiformis]639000607 (11)ref|XP_009608415.1|4e-57PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Nicotiana tomentosiformis]
JMSF035B22Sequence689000607 (11)ref|XP_009608415.1|3e-61PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Nicotiana tomentosiformis]569000607 (11)ref|XP_009608415.1|3e-42PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF021M08-                                           AAAATTCTGAAAAAGGATCTTACAACT
rJMSF033E17-                                           AAAATTCTGAAAAAGGATCTTACAACT
rJMSF020A06-                                           AAAATTCTGAAAAAGGATCTTACAACT
rJMSF035B22-                                           AAAATTCTGAAAAAGGATCTTACAACT
rJMFF015A11-                 GCTGCTGCATCATCATCACATGCTACAAAATTCTGAAAAAGGATCTTACAACT
                      ____________________________________________________________
consensus                    GCTGCTGCATCATCATCACATGCTACAAAATTCTGAAAAAGGATCTTACAACT
 
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rJMSF021M08-          ACTCTAATAAAGCCTAATTTACAATAATTATATTTTTTAAAAAATTAAGAAATTAGGAAA
rJMSF033E17-          ACTCTAATAAAGCCTAATTTACAATAATTATATTTTTTAAAAAATTAAGAAATTAGGAAA
rJMSF020A06-          ACTCTAATAAAGCCTAATTTACAATAATTATATTTTTTAAAAAATTAAGAAATTAGGAAA
rJMSF035B22-          ACTCTAATAAAGCCTAATTTACAATAATTATATTTTTTAAAAAATTAAGAAATTAGGAAA
rJMFF015A11-          ACTCTAATAAAGCCTAATTTACAATAATTATATTTTTTAAAAAATTAAGAAATTAGGAAA
                      ____________________________________________________________
consensus             ACTCTAATAAAGCCTAATTTACAATAATTATATTTTTTAAAAAATTAAGAAATTAGGAAA
 
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rJMSF021M08-          AAAATAAAGAAAATTCCTAGCCTAATGTTCTACACTGTCTAAAACTCTTCTTTCTTTTTT
rJMSF033E17-          AAAATAAAGAAAATTCCTAGCCTAATGTTCTACACTGTCTAAAACTCTTCTTTCTTTTTT
rJMSF020A06-          AAAATAAAGAAAATTCCTAGCCTAATGTTCTACACTGTCTAAAACTCTTCTTTCTTTTTT
rJMSF035B22-          AAAATAAAGAAAATTCCTAGCCTAATGTTCTACACTGTCTAAAACTCTTCTTTCTTTTTT
rJMFF015A11-          AAAATAAAGAAAATTCCTAGCCTAATGTTCTACACTGTCTAAAACTCTTCTTTCTTTTTT
                      ____________________________________________________________
consensus             AAAATAAAGAAAATTCCTAGCCTAATGTTCTACACTGTCTAAAACTCTTCTTTCTTTTTT
 
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rJMSF021M08-          GTTTTTTAATTTTTTTTTTCCTAAGACCTAAAATACGATTAAAATGAATTACCATTTACC
rJMSF033E17-          GTTTTTTAATTTTTTTTTTCCTAAGACCTAAAATACGATTAAAATGAATTACCATTTACC
rJMSF020A06-          GTTTTTTAATTTTTTTTTTCCTAAGACCTAAAATACGATTAAAATGAATTACCATTTACC
rJMSF035B22-          GTTTTTTAATTTTTTTTTTCCTAAGACCTAAAATACGATTAAAATGAATTACCATTTACC
rJMFF015A11-          GTTTTTTAATTTTTTTTTTCCTAANACCTAAAATACGATTAAAATGAATTACCATTTACC
JMSF035B22+                                         AAATACGATTAAAATGAATTACCATTTACC
JMSF033E17+                                            TACGATTAAAATGAATTACCATTTACC
JMSF020A06+                                            TACGATTAAAATGAATTACCATTTACC
                      ____________________________________________________________
consensus             GTTTTTTAATTTTTTTTTTCCTAAGACCTAAAATACGATTAAAATGAATTACCATTTACC
 
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rJMSF021M08-          ACCATCATCATCACGCATCATTTGGTAAATTCCCAGCAGTTAAACCACATTTGATTGTTT
rJMSF033E17-          ACCATCATCATCACGCATCATTTGGTAAATTCCCAGCAGTTAAACCACATTTGATTGTTT
rJMSF020A06-          ACCATCATCATCACGCATCATTTGGTAAATTCCCAGCAGTTAAACCACATTTGATTGTTT
rJMSF035B22-          ACCATCATCATCACGCATCATTTGGTAAATTCCCAGCAGTTAAACCACATTTGATTGTTT
rJMFF015A11-          ACCATCATCATCACGCATCATTTGGTAAATTCCCAGCAGTTAAACCACATTTGATTGTTT
JMSF035B22+           ACCATCATCATCACGCATCATTTGGTAAATTCCCAGCAGTTAAACCACATTTGATTGTTT
JMSF033E17+           ACCATCATCATCACGCATCATTTGGTAAATTCCCAGCAGTTAAACCACATTTGATTGTTT
JMSF021M08+                 ATCATCACGCATCATTTGGTAAATTCCCAGCAGTTAAACCACATTTGATTGTTT
JMSF020A06+           ACCATCATCATCACGCATCATTTGGTAAATTCCCAGCAGTTAAACCACATTTGATTGTTT
                      ____________________________________________________________
consensus             ACCATCATCATCACGCATCATTTGGTAAATTCCCAGCAGTTAAACCACATTTGATTGTTT
 
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rJMSF021M08-          AGCAAGGATTGGTCTCGGGCGGGTCGAANAGCTCCGGGCCGAGCATGGTTCGGCAAATCG
rJMSF033E17-          AGCAAGGATTGGTCTCGGGCGGGTCGAANAGCTCCGGGCCGAGCATGGTTCGGCAAATCG
rJMSF020A06-          AGCAAGGATTGGTCTCGGGCGGGTCGAANAGCTCCGGGCCGAGCATGGTTCGGCAAATCG
rJMSF035B22-          AGCAAGGATTGGTCTCGGGCGGGTCGAANAGCTCCGGGCCGAGCATGGTTCGGCAAATCG
rJMFF015A11-          AGCAAGGATTGGTCTCGGGCGGGTCNAAAAGCTCCGGGCCGAGCATGGTTCGGCAAATCG
JMSF035B22+           AGCAAGGATTGGTCTCGGGCGGGTCGAAGAGCTCCGGGCCGAGCATGGTTCGGCAAATCG
JMSF033E17+           AGCAAGGATTGGTCTCGGGCGGGTCGAAGAGCTCCGGGCCGAGCATGGTTCGGCAAATCG
JMSF021M08+           AGCAAGGATTGGTCTCGGGCGGGTCGAAGAGCTCCGGGCCGAGCATGGTTCGGCAAATCG
JMSF020A06+           AGCAAGGATTGGTCTCGGGCGGGTCGAAGAGCTCCGGGCCGAGCATGGTTCGGCAAATCG
                      ____________________________________________________________
consensus             AGCAAGGATTGGTCTCGGGCGGGTCGAAGAGCTCCGGGCCGAGCATGGTTCGGCAAATCG
 
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rJMSF021M08-          GGCAAACGGGGNGCTTGGCGAGCCACGTATCGGCGCATTCTANATGGAAGCCGNGGTTGC
rJMSF033E17-          GGCAAACGGGGTGCTTGGCGAGCCACGTATCGGCGCATTCTANATGGAAGCCGNGGTTGC
rJMSF020A06-          GGCAAACGGGGTGCTTGGCGAGCCACGTATCGGCGCATTCTANATGGAAGCCGNGGTTGC
rJMSF035B22-          GGCAAACGGGGTGCTTGGCGAGCCACGTATCGGCGCATTCTAGATGGAAGCCGNGGTTGC
rJMFF015A11-          GGCAAACGGGGTGCTTGGCGAGCC-CGTATCGGCGCATTCTAAATGGAAGCCGTGGTTGC
JMSF035B22+           GGCAAACGGGGTGCTTGGCGAGCCACGTATCGGCGCATTCTAGATGGAAGCCGTGGTTGC
JMSF033E17+           GGCAAACGGGGTGCTTGGCGAGCCACGTATCGGCGCATTCTAGATGGAAGCCGTGGTTGC
JMSF021M08+           GGCAAACGGGGTGCTTGGCGAGCCACGTATCGGCGCATTCTAGATGGAAGCCGTGGTTGC
JMSF020A06+           GGCAAACGGGGTGCTTGGCGAGCCACGTATCGGCGCATTCTAGATGGAAGCCGTGGTTGC
                      ____________________________________________________________
consensus             GGCAAACGGGGTGCTTGGCGAGCCACGTATCGGCGCATTCTAGATGGAAGCCGTGGTTGC
 
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rJMSF021M08-          AGCCGGGGACCACCCTCGCCGCTTGCTCGCTGCCGATGTCGTCCAGGCACACCGCGCAAT
rJMSF033E17-          AGCCGGGGACCACCCTCGCCGCTTGCTCGCTGCCGATGTCGTCCAGGCACACCGCGCAAT
rJMSF020A06-          AGCCGGGGACCACCCTCGCCGCTTGCTCGCTGCCGATGTCGTCCAGGCACACCGCGCAAT
rJMSF035B22-          AGCCGGGGACCACCCTCGCCGCTTGCTCGCTGCCGATGTCGTCCAGGCACACCGCGCAAT
rJMFF015A11-          AGCCGGGGACCACCCTCGCCGCTTGCTCGCTGCCNATGTCGTCCAGGCACACCGCGCAAT
JMSF035B22+           AGCCGGGGACCACCCTCGCCGCTTGCTCGCTGCCGATGTCGTCCAGGCACACCGCGCAAT
JMSF033E17+           AGCCGGGGACCACCCTCGCCGCTTGCTCGCTGCCGATGTCGTCCAGGCACACCGCGCAAT
JMSF021M08+           AGCCGGGGACCACCCTCGCCGCTTGCTCGCTGCCGATGTCGTCCAGGCACACCGCGCAAT
JMFF015A11+                                                                  GCAAT
JMSF020A06+           AGCCGGGGACCACCCTCGCCGCTTGCTCGCTGCCGATGTCGTCCAGGCACACCGCGCAAT
                      ____________________________________________________________
consensus             AGCCGGGGACCACCCTCGCCGCTTGCTCGCTGCCGATGTCGTCCAGGCACACCGCGCAAT
 
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rJMSF021M08-          CGNGGCCCATCACCAAATCCTTGCCGGTGATCGCCGGAAGCTTCTCCAGCTGCGCGGCGG
rJMSF033E17-          CGNGGCCCATCACCAAATCCTTGCCGGTGATCGCCGGAAGCTTCTCCAGCTGCGCGGCGG
rJMSF020A06-          CGNGGCCCATCACCAAATCCTTGCCGGTGATCGCCGGAAGCTTCTCCAGCTGCGCGGCGG
rJMSF035B22-          CGTGGCCCATCACCAAATCCTTGCCGGTGATCGCCGGAAGCTTCTCCAGCTGCGCGGCGG
rJMFF015A11-          CGNGGCCCATCACCAAATCCTTGCCGGNGATCGCCGGAAGCTTCTCCAGCTGCNCGGCGG
JMSF035B22+           CGTGGCCCATCACCAAATCCTTGCCGGTGATCGCCGGAAGCTTCTCCAGCTGCGCGGCGG
JMSF033E17+           CGTGGCCCATCACCAAATCCTTGCCGGTGATCGCCGGAAGCTTCTCCAGCTGCGCGGCGG
JMSF021M08+           CGTGGCCCATCACCAAATCCTTGCCGGTGATCGCCGGAAGCTTCTCCAGCTGCGCGGCGG
JMFF015A11+           CGTGGCCCATCACCAAATCCTTGCCGGTGATCGCCGGAAGCTTCTCCAGCTGCGCGGCGG
JMSF020A06+           CGTGGCCCATCACCAAATCCTTGCCGGTGATCGCCGGAAGCTTCTCCAGCTGCGCGGCGG
                      ____________________________________________________________
consensus             CGTGGCCCATCACCAAATCCTTGCCGGTGATCGCCGGAAGCTTCTCCAGCTGCGCGGCGG
 
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rJMSF021M08-          ANAGCCCCTTCTCTTTCGTCCCTTTCATCACCTCCNGGCCGCGCTCCGGGTCGGCGGCGC
rJMSF033E17-          AGAGCCCCTTCTCTTTCGTCCCTTTCATCACCTCCTGGCCGCGCTCCGGGTCGGCGGCGC
rJMSF020A06-          AGAGCCCCTTCTCTTTCGTCCCTTTCATCACCTCCTGGCCGCGCTCCGGGTCGGCGGCGC
rJMSF035B22-          ANAGCCCCTTCTCTTTCGTCCCTTTCATCACCTCCTGGCCGCGCTCCGGGTCGGCGGCGC
rJMFF015A11-          AAAGCCCCTTCTCTTTCGTCCCTTTCATCACCTCCTGGCCGCGCTCCGGGTCGGCGGCGC
JMSF035B22+           AGAGCCCCTTCTCTTTCGTCCCTTTCATCACCTCCTGGCCGCGCTCCGGGTCGGCGGCGC
JMSF033E17+           AGAGCCCCTTCTCTTTCGTCCCTTTCATCACCTCCTGGCCGCGCTCCGGGTCGGCGGCGC
JMSF021M08+           AGAGCCCCTTCTCTTTCGTCCCTTTCATCACCTCCTGGCCGCGCTCCGGGTCGGCGGCGC
JMFF015A11+           AGAGCCCCTTCTCTTTCGTCCCTTTCATCACCTCCTGGCCGCGCTCCGGGTCGGCGGCGC
JMSF020A06+           AGAGCCCCTTCTCTTTCGTCCCTTTCATCACCTCCTGGCCGCGCTCCGGGTCGGCGGCGC
JMSF006O06+                                                                   GCGC
                      ____________________________________________________________
consensus             AGAGCCCCTTCTCTTTCGTCCCTTTCATCACCTCCTGGCCGCGCTCCGGGTCGGCGGCGC
 
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rJMSF021M08-          CGCCGTTCTGGTAGGTGGCGGCGTACCAGAGCAAGCAGATGTACACCAGGAACACGGCGC
rJMSF033E17-          CGCCGTTCTGGTAGGTGGCGGCGTACCAGAGCAAGCAGATGTACACCAGGAACACGGCGC
rJMSF020A06-          CGCCGTTCTGGTAGGTGGCGGCGTACCAGAGCAAGCAGATGTACACCAGGAACACGGCGC
rJMSF035B22-          CG                                                          
rJMFF015A11-          CGCCGTTCTGGTAGGTGGCGGCGTACCAGAGCAAGCAGATGTACACCAGGAACACGGCGC
JMSF035B22+           CGCCGTTCTGGTAGGTGGCGGCGTACCAGAGCAAGCAGATGTACACCAGGAACACGGCGC
JMSF033E17+           CGCCGTTCTGGTAGGTGGCGGCGTACCAGAGCAAGCAGATGTACACCAGGAACACGGCGC
JMSF021M08+           CGCCGTTCTGGTAGGTGGCGGCGTACCAGAGCAAGCAGATGTACACCAGGAACACGGCGC
JMFF015A11+           CGCCGTTCTGGTAGGTGGCGGCGTACCAGAGCAAGCAGATGTACACCAGGAACACGGCGC
JMSF020A06+           CGCCGTTCTGGTAGGTGGCGGCGTACCAGAGCAAGCAGATGTACACCAGGAACACGGCGC
JMSF006O06+           CGCCGTTCTGGTAGGTGGCGGCGTACCAGAGCAAGCAGATGTACACCAGGAACACGGCGC
                      ____________________________________________________________
consensus             CGCCGTTCTGGTAGGTGGCGGCGTACCAGAGCAAGCAGATGTACACCAGGAACACGGCGC
 
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rJMSF021M08-          TCATGCCGGCGC                                                
rJMSF033E17-          TCATGCCGGCGC                                                
rJMSF020A06-          TCATGCCGGCGCAGGGG                                           
rJMFF015A11-          TCATGCCGGCGCAGGGGA                                          
JMSF035B22+           TCATGCCGGCGCAGGGGAGAAACAGAGCCAAAAACACGGAGAGAAGCATTCTTAGTAGTA
JMSF033E17+           TCATGCCGGCGCAGGAGAGAAACAGAGCCAAAAACACGGAGAGAAGCATTCTTAGTAGTA
JMSF021M08+           TCATGCCGGCGCAGGGGAGAAACAGAGCCAAAAACACGGAGAGAAGCATTCTTAGTAGTA
JMFF015A11+           TCATGCCGGCGCAGGGGAGAAACAGAGCCAAAAACACGGAGAGAAGCATTCTTAGTAGTA
JMSF020A06+           TCATGCCGGCGCAGGGGAGAAACAGAGCCAAAAACACGGAGAGAAGCATTCTTAGTAGTA
JMSF006O06+           TCATGCCGGCGCAGGGGAGAAACAGAGCCAAAAACACGGAGAGAAGCATTCTTAGTAGTA
                      ____________________________________________________________
consensus             TCATGCCGGCGCAGGGGAGAAACAGAGCCAAAAACACGGAGAGAAGCATTCTTAGTAGTA
 
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JMSF035B22+           GCTAAATATATGAATTCGAATG-AAAAATTTTAGAAAACTGGGAATGTGGGTTTTTCAAG
JMSF033E17+           GCTAAATATATGAATTCGAATG-AAAAATTTTAGAAAACTGGGAATGTGGGTTTTTCAAG
JMSF021M08+           GCTAAATATATGAATTCGAATG-AAAAATTTTAGAAAACTGGGAATGTGGGTTTTTCAAG
JMFF015A11+           GCTAAATATATGAATTCGAATG-AAAAATTTTAGAAAACTGGGAATGTGGGTTTTTCAAG
JMSF020A06+           GCTAAATATATGAATTCGAATG-AAAAATTTTAGAAAACTGGGAATGTGGGTTTTTCAAG
JMSF006O06+           GCTAAATATATGAATTCGAATGAAAAAATTTTAGAAAACTGGGAATGTGGGTTTTTCAAG
                      ____________________________________________________________
consensus             GCTAAATATATGAATTCGAATG-AAAAATTTTAGAAAACTGGGAATGTGGGTTTTTCAAG
 
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JMSF035B22+           GCGATTCAGGGAAGCATGAGAGAAGAATTAATTAAATGTTATTTGAAAATGGAGGGCGGC
JMSF033E17+           GCGATTCAGGGAAGCATGAGAGAAGAATTAATTAAATGTTATTTGAAAATGGAGGGCGGC
JMSF021M08+           GCGATTCAGGGAAGCATGAGAGAAGAATTAATTAAATGTTATTTGAAAATGGAGGGCGGC
JMFF015A11+           GCGATTCAGGGAAGCATGAGAGAAGAATTAATTAAATGTTATTTGAAAATGGAGGGCGGC
JMSF020A06+           GCGATTCAGGGAAGCATGAGAGAAGAATTAATTAAATGTTATTTGAAAATGGAGGGCGGC
JMSF006O06+           GCGATTCAGGGAAGCATGAGAGAAGAATTAATTAAATGTTATTTGAAAATGGAGGGCGGC
                      ____________________________________________________________
consensus             GCGATTCAGGGAAGCATGAGAGAAGAATTAATTAAATGTTATTTGAAAATGGAGGGCGGC
 
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JMSF035B22+           GATGGTGGCGGCGGAGAGAGAATATTTGAGTGGAGTGCAAAGCACACCAATTTCACGG  
JMSF033E17+           GATGGTGGCGGCGGAGAGAGAATATTTGAGTGGAGTGCAAAGCACACCAATTTCACGGTC
JMSF021M08+           GATGGTGGCGGCGGAGAGAGAATATTTGAGTGGAGTGCAAAGCACACCAATTTCACGGTC
JMFF015A11+           GATGGTGGCGGCGGAGAGAGAATATTTGAGTGGAGTGCAAAGCACACCAATTTCACGGT 
JMSF020A06+           GATGGTGGCGGCGGAGAGAGAATATTTGAGTGGAGTGCAAAGCACACCAATTTCACGGTC
JMSF006O06+           GATGGTGGCGGCGGAGAGAGAATATTTGAGTGGAGTGCAAAGCACACCAATTTCACGGTC
                      ____________________________________________________________
consensus             GATGGTGGCGGCGGAGAGAGAATATTTGAGTGGAGTGCAAAGCACACCAATTTCACGGTC