Contig 000603:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015M24Sequence555000603 (5)ref|XP_009760349.1|8e-52PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana sylvestris]
JMSF006C19Sequence401000603 (5)ref|XP_006367734.1|2e-11PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum]374002839 (3)ref|XP_009588814.1|6e-42PREDICTED: transcription factor TGA1 [Nicotiana tomentosiformis]
JMSF006I17Sequence367000603 (5)ref|XP_010320179.1|1e-08PREDICTED: probable pectin methyltransferase QUA2 [Solanum lycopersicum]
JMSF007D16Sequence245000603 (5)753021368ref|XP_009760349.1|3e-88PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana sylvestris]
JMSF026B23Sequence621000603 (5)ref|XP_006367734.1|3e-115PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum]724011246 (2)ref|XP_009760349.1|7e-139PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF026B23+                                                                    ATG
                      ____________________________________________________________
consensus                                                                      ATG
 
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JMSF026B23+           AACCAATCATTGCGGGAAGGCCTCTTTCGAGAGTAAGTTGAACTTGACTGCCAGAAGCCT
                      ____________________________________________________________
consensus             AACCAATCATTGCGGGAAGGCCTCTTTCGAGAGTAAGTTGAACTTGACTGCCAGAAGCCT
 
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JMSF026B23+           CGTAGTTTGCAATGCACATAGTTAATAGTTGGCTGGAGAACAGATGTGCACCAAAACTAC
                      ____________________________________________________________
consensus             CGTAGTTTGCAATGCACATAGTTAATAGTTGGCTGGAGAACAGATGTGCACCAAAACTAC
 
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JMSF026B23+           CAAAACCGCATCCAATATCCAGGATGAGTCGAACCCCAGCTTGCACAAAGTTGGATTCGT
                      ____________________________________________________________
consensus             CAAAACCGCATCCAATATCCAGGATGAGTCGAACCCCAGCTTGCACAAAGTTGGATTCGT
 
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JMSF026B23+           TTCTTAGCCCAATCATTTCGGCAATTTGATGTGAGTAGTCTTCAATACTGTCGAACATGG
                      ____________________________________________________________
consensus             TTCTTAGCCCAATCATTTCGGCAATTTGATGTGAGTAGTCTTCAATACTGTCGAACATGG
 
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JMSF026B23+           AAGATTCTGAACGAAACGAGATCTTCTCTTCCTCCAACATCATCATCCTCTTCGTCAAAC
                      ____________________________________________________________
consensus             AAGATTCTGAACGAAACGAGATCTTCTCTTCCTCCAACATCATCATCCTCTTCGTCAAAC
 
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JMSF026B23+           TCCCAGAAGAGAGTACCTCCTGTGCCGTGATGTTAACATTGTCAAGCCAGATAACGTCCC
                      ____________________________________________________________
consensus             TCCCAGAAGAGAGTACCTCCTGTGCCGTGATGTTAACATTGTCAAGCCAGATAACGTCCC
 
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JMSF026B23+           TTCCAGTAGGCCACCTAAGAGGAATTCTGTAATTAACGGGCAGAGGAACCAGACAACTTT
                      ____________________________________________________________
consensus             TTCCAGTAGGCCACCTAAGAGGAATTCTGTAATTAACGGGCAGAGGAACCAGACAACTTT
 
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JMSF026B23+           CTTGGAACCTAGGCGTACAATGTCGATCATACTCTTCCCCGTCAGAAAAGCCTAATCCAA
                      ____________________________________________________________
consensus             CTTGGAACCTAGGCGTACAATGTCGATCATACTCTTCCCCGTCAGAAAAGCCTAATCCAA
 
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JMSF026B23+           GGCTTTGAGTAACATTGAAGCACGGCACATAATTCTCGTTCTCAGGAGGACAGTAATCAA
JMFF015M24+                                                      AGGAGGACAGTAATCAA
                      ____________________________________________________________
consensus             GGCTTTGAGTAACATTGAAGCACGGCACATAATTCTCGTTCTCAGGAGGACAGTAATCAA
 
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JMSF026B23+           GATCCTTCGGTTTAGCAGAACCAAGAGAAATCTGTCCAATGTCCTTCAAATCCAACACCA
JMFF015M24+           GATCCTTCGGTTTAGCAGAACCAAGAGAAATC-CTCCAATGTCCTTCAAATCCAACACCA
                      ____________________________________________________________
consensus             GATCCTTCGGTTTAGCAGAACCAAGAGAAATCTGTCCAATGTCCTTCAAATCCAACACCA
 
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JMSF026B23+           CTTGCTCTTGAAGCC                                             
JMFF015M24+           CTTGCTCTTGAAGCCTCCTATACCCATGATATATTCGAACTTTGGATGACTTTGTTATCG
                      ____________________________________________________________
consensus             CTTGCTCTTGAAGCCTCCTATACCCATGATATATTCGAACTTTGGATGACTTTGTTATCG
 
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JMFF015M24+           ACATGGTCCAAAAAAAGGACCCAGCAAGAGAAAGAACTACAATGGCAATTAAACTAAATC
                      ____________________________________________________________
consensus             ACATGGTCCAAAAAAAGGACCCAGCAAGAGAAAGAACTACAATGGCAATTAAACTAAATC
 
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JMFF015M24+           TGAGCACAAGTAAGGTGAACTTAAATCGACTTCTCCCATTCCCCCCCGGGTTGAAGGGAT
                      ____________________________________________________________
consensus             TGAGCACAAGTAAGGTGAACTTAAATCGACTTCTCCCATTCCCCCCCGGGTTGAAGGGAT
 
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JMFF015M24+           CAGATAAGAAACCATTTTCACCAATACCAACACCTTTAGAAGGTGAACTATCTGGAAAAA
                      ____________________________________________________________
consensus             CAGATAAGAAACCATTTTCACCAATACCAACACCTTTAGAAGGTGAACTATCTGGAAAAA
 
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JMFF015M24+           GAATCCTTAAAGGGGATATTACAGACAAGTAGCTTTGATCAGAAGCTGATCCACTCTGCT
JMSF006C19+                              TACAGACAAGTAGCTTTGATCAGAAGCTGATCCACTCTGCT
JMSF006I17+                                                                CTCTGCT
                      ____________________________________________________________
consensus             GAATCCTTAAAGGGGATATTACAGACAAGTAGCTTTGATCAGAAGCTGATCCACTCTGCT
 
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JMFF015M24+           CCAAATCTTCCTTCTCTATCTTTTCTTTCATCTGTGAATCATCCCAGAAATCCTGGCCGT
JMSF006C19+           CCAAATCTTCCTTCTCTATCTTTTCTTTCATCTGTGAATCATCCCAGAAATCCTGGCCGT
JMSF006I17+           CCAAATCTTCCTTCTCTATCTTTTCTTTCATCTGTGAATCATCCCAGAAATCCTGGCCGT
                      ____________________________________________________________
consensus             CCAAATCTTCCTTCTCTATCTTTTCTTTCATCTGTGAATCATCCCAGAAATCCTGGCCGT
 
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JMFF015M24+           TCCCTGAGAACCGGCAACTACCCCCACCGGATAAACCACGCTGCTGCGGCCTAGCCATAT
JMSF006C19+           TCCCTGAGAACCGGCAACTACCCCCACCGGATAAACCACGCTGCTGCGGCCTAGCCATAT
JMSF007D16+                                                        GCGGCCTAGCCATAT
JMSF006I17+           TCCCTGAGAACCGGCAACTACCCCCACCGGATAAACCACGCTGCTGCGGCCTAGCCATAT
                      ____________________________________________________________
consensus             TCCCTGAGAACCGGCAACTACCCCCACCGGATAAACCACGCTGCTGCGGCCTAGCCATAT
 
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JMFF015M24+           TCCGGCCTTAATGGTGTTTGCAGAAATGCCTCAAATTCTTGAATAGCTTTCTCCTTCGT 
JMSF006C19+           TCCGGCCTTAATGGTGTTTGCAGAAATGCCTCAAATTCTTGAATAGCTTTCTCCTTCGTG
JMSF007D16+           TCCGGCCTTAATGGTGTTTGCAGAAATGCCTCAAATTCTTGAATAGCTTTCTCCTTCGTG
JMSF006I17+           TCCGGCCTTAATGGTGTTTGCAGAAATGCCTCAAATTCTTGAATAGCTTTCTCCTTCGTG
                      ____________________________________________________________
consensus             TCCGGCCTTAATGGTGTTTGCAGAAATGCCTCAAATTCTTGAATAGCTTTCTCCTTCGTG
 
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JMSF006C19+           GTGCCACCACTATACAATGAACGGAGGTTTTATCCCCCGCTTTCTCACTCTAACTCCGCG
JMSF007D16+           GTGCCACCACTATACAATGAACGGAGGTTTTATCCCCCGCTTTCTCACTCTAGCTCCGCG
JMSF006I17+           GTGCCACCACTATACAATGAACGGAGGTTTTATCCCCCGCTTTCTCACTCTAACTCCGCG
                      ____________________________________________________________
consensus             GTGCCACCACTATACAATGAACGGAGGTTTTATCCCCCGCTTTCTCACTCTAACTCCGCG
 
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JMSF006C19+           TCTGGGTTTATTTCACCGACGCGGTTTTGGAATCTTGAGAGAGAGAGAGAGAGATGGAGA
JMSF007D16+           TCTGGGTTTATTTCACCGACGCGGTTTTGGAATCTTGAGAGAGAGAGAGAGAGATGGAGA
JMSF006I17+           TCTGGGTTTATTTCACCGACGCGGTTTTGGAATCTTGAGAGAGAGAGAGAGAGATGGAGA
                      ____________________________________________________________
consensus             TCTGGGTTTATTTCACCGACGCGGTTTTGGAATCTTGAGAGAGAGAGAGAGAGATGGAGA
 
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JMSF006C19+           CTGGAGAGTGGGTATATATGGATCCAATTCACCATTCACCTCTCTATTGAAAAAGGCTTC
JMSF007D16+           CTGGAGAGTGGGTATATATGGATCCAATTCACCATTCACCTCTCTAT             
JMSF006I17+           CTGGAGAGTGGGTATATATGGATCCAATTCACCATTCACCTCTCTATTGAAAAAGGCTTC
                      ____________________________________________________________
consensus             CTGGAGAGTGGGTATATATGGATCCAATTCACCATTCACCTCTCTATTGAAAAAGGCTTC