Contig 000601:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047I04Sequence442000601 (6)ref|XP_009761880.1|210PREDICTED: uncharacterized protein LOC104213993 [Nicotiana sylvestris]425004140 (3)ref|XP_009615808.1|59.7PREDICTED: uncharacterized protein LOC104108475 [Nicotiana tomentosiformis] ref|
JMFS054H07Sequence607000601 (6)ref|XP_009761880.1|240PREDICTED: uncharacterized protein LOC104213993 [Nicotiana sylvestris]
JMFS072C07Sequence626000601 (6)ref|XP_009615808.1|162PREDICTED: uncharacterized protein LOC104108475 [Nicotiana tomentosiformis] ref|
JMFS104H11Sequence614000601 (6)ref|XP_009761880.1|194PREDICTED: uncharacterized protein LOC104213993 [Nicotiana sylvestris]
JMSF006G05Sequence440000601 (6)ref|XP_002312634.2|3e-13hypothetical protein POPTR_0008s17750g [Populus trichocarpa] gb|EEE90001.2| hypo
JMSF014E14Sequence537000601 (6)ref|XP_009761880.1|136PREDICTED: uncharacterized protein LOC104213993 [Nicotiana sylvestris]772004140 (3)ref|XP_009761880.1|205PREDICTED: uncharacterized protein LOC104213993 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS072C07+                                      CTGTGGCCATTTGTAGGGTTTTCAGCATTCAAG
                      ____________________________________________________________
consensus                                        CTGTGGCCATTTGTAGGGTTTTCAGCATTCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS072C07+           GATGAGCTTTCTGAGGTCATCAAAGCAATATTGTCATCTGAACTTCTTAAATCTCTGCAA
                      ____________________________________________________________
consensus             GATGAGCTTTCTGAGGTCATCAAAGCAATATTGTCATCTGAACTTCTTAAATCTCTGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS072C07+           GAAATATTAGCAAAAGAAACTGTAGTGTCTGGTTCTGAAACTTGGTCCCTTCCTAAGCTT
                      ____________________________________________________________
consensus             GAAATATTAGCAAAAGAAACTGTAGTGTCTGGTTCTGAAACTTGGTCCCTTCCTAAGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS072C07+           TTATTCATCGAATCAACTCCACTCTTCGAGTAATGAGACGGTGGATCCCTAGAACTCTTC
                      ____________________________________________________________
consensus             TTATTCATCGAATCAACTCCACTCTTCGAGTAATGAGACGGTGGATCCCTAGAACTCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS072C07+           AATGTAGAAAGAGAGGCATTCCGTGATGAACGTGGTGATTCATCATCATCATCAGTGAAA
                      ____________________________________________________________
consensus             AATGTAGAAAGAGAGGCATTCCGTGATGAACGTGGTGATTCATCATCATCATCAGTGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS072C07+           GTGGCAATTTCACATCCATCATCATTTTCTTCATTCACCGAATCTGCAACAGATGTTTGT
                      ____________________________________________________________
consensus             GTGGCAATTTCACATCCATCATCATTTTCTTCATTCACCGAATCTGCAACAGATGTTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS072C07+           CCGTCCTTGTCAATGTATTTTTCATTCGATAAGCTAACTTTAGGTGGTGAATTTGAGCTA
JMFF047I04+                                                         GTGAATTTGAGCTA
JMFS054H07+                        TGTATTTTTCATTCGATAAGCTAACTTTAGGTGGTGAATNTGAGCTA
                      ____________________________________________________________
consensus             CCGTCCTTGTCAATGTATTTTTCATTCGATAAGCTAACTTTAGGTGGTGAATTTGAGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS072C07+           TCTCTATGGAACGACTGAATCGTAATAAACAGGGATGGCTGGTCTACGCTTTTAGAACTC
JMFF047I04+           TCTCTATGGAACGACTGAATCGTAATAAACAGGGATGGCTGGTCTACGCTTTTAGAACTC
JMFS054H07+           TCTCTATGGAACGACTGAATCGTAATAAACAGGGATGGCTGGTCTACGCTTTTAGAACTC
                      ____________________________________________________________
consensus             TCTCTATGGAACGACTGAATCGTAATAAACAGGGATGGCTGGTCTACGCTTTTAGAACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS072C07+           TTTTTGCAGTTCACTGGAGTGCAAATGCTAATAGCCTCCTCGGTAGCCCCAAAGTCTGCA
JMFF047I04+           TTTTTGCAGTTCACTGGAGTGCAAATGCTAATAGCCTCCTCGGTAGCCCCAAAGTCTGCA
JMFS054H07+           TTTTTGCAGTTCACTGGAGTGCAAATGCTAATAGCCTCCTCGGTAGCCCCAAAGTCTGCA
JMFS104H11+                                                                GTCTGCA
                      ____________________________________________________________
consensus             TTTTTGCAGTTCACTGGAGTGCAAATGCTAATAGCCTCCTCGGTAGCCCCAAAGTCTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS072C07+           AGATTAATTACACATGTCCCCAAAAGCTGGCCTCTACTTCCCTTGTCCTTCCGAGGCTCG
JMFF047I04+           AGATTAATTACACATGTCCCCAAAAGCTGGCCTCTACTTCCCTTGTCCTTCCGAGGCTCG
JMFS054H07+           AGATTAATTACACATGTCCCCAAAAGCTGGCCTCTACTTCCCTTGTCCTTCCGAGGCTCG
JMFS104H11+           AGATTAATTACACATGTCCCCAAAAGCTGGCCTCTACTTCCCTTGTCCTTCCGAGGCTCG
                      ____________________________________________________________
consensus             AGATTAATTACACATGTCCCCAAAAGCTGGCCTCTACTTCCCTTGTCCTTCCGAGGCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS072C07+           TACAGGTAAAAATCTAAGAAATTCTTCTGGAATTTATCTTGAGCCTTCTTATC       
JMFF047I04+           TACAGGTAAAAATCTAAGAAATTCTTCTGGAATTTATCTTGAGCCTTCTTATCTCGGCAT
JMFS054H07+           TACAGGTAAAAATCTAAGAAATTCTTCTGGAATTTATCTTGAGCCTTCTTATCTCGGCAT
JMFS104H11+           TACAGGTAAAAATCTAAGAAATTCTTCTGGAATTTATCTTAAGCCTTCTTATCTCGGCAT
JMSF014E14+                                             TATCTTGAGCCTTCTTATCTCGGCAT
                      ____________________________________________________________
consensus             TACAGGTAAAAATCTAAGAAATTCTTCTGGAATTTATCTTGAGCCTTCTTATCTCGGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047I04+           AAAGTCACTGGGAGAGTTATCGATTCATTGAACTCAATGCCCGTATCTCCAACATCAGAT
JMFS054H07+           AAAGTCACTGGGAGAGTTATCGATTCATTGAACTCAATGCCCGTATCTCCAACATCAGAT
JMFS104H11+           AAAGTCACTGGGAGAGTTATCGATTCATTGAACTCAATGCCCGTATCTCCAACATCAGAT
JMSF014E14+           AAAGTCACTGGGAGAGTTATCGATTCATTGAACTCAATGCCCGTATCTCCAACATCAGAT
                      ____________________________________________________________
consensus             AAAGTCACTGGGAGAGTTATCGATTCATTGAACTCAATGCCCGTATCTCCAACATCAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047I04+           ACAAAGGATCCAGAATTCTGTTCACCGTTTTCCCAGACAAATAATACTGACTGGACAGAT
JMFS054H07+           ACAAAGGATCCAGAATTCTGTTCACCGTTTTCCCAGACAAATAATACTGACTGGACAGAT
JMFS104H11+           ACAAAGGATCCAGAATTCTGTTCACCGTTTTCCCAGACAAATAATACTGACTGGACAGAT
JMSF014E14+           ACAAAGGATCCAGAATTCTGTTCACCGTTTTCCCAGACAAATAATACTGACTGGACAGAT
JMSF006G05+                                                   ATAATACTGACTGGACAGAT
                      ____________________________________________________________
consensus             ACAAAGGATCCAGAATTCTGTTCACCGTTTTCCCAGACAAATAATACTGACTGGACAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047I04+           TTTAGGGACTGTGATGGAGGCCAAGGCTTAACCTCCTCTACATGGATGATAAAAT     
JMFS054H07+           TTTAGGGACTGTGATGGAGGCCAAGGCTTAACCTCCTCTACATGGATGATAAAATCAACC
JMFS104H11+           TTTAGGGACTGTGATGGAGGCCAAGGCTTAACCTCCTCTACATGGATGATAAAATCAACC
JMSF014E14+           TTTAGGGACTGTGATGGAGGCCAAGGCTTAACCTCCTCTACATGGATGATAAAATCAACC
JMSF006G05+           TTTAGGGACTGTGATGGAGGCCAAGGCTTAACCTCCTCTACATGGATGATAAAATCAACC
                      ____________________________________________________________
consensus             TTTAGGGACTGTGATGGAGGCCAAGGCTTAACCTCCTCTACATGGATGATAAAATCAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS054H07+           TGAAGAGAACTTCCCTTTCTGTGCTTTGACCTCAACCCAAGAACCATGGCTTAAGATCCA
JMFS104H11+           TGAAGAGAACTTCCCTTTCTGTGCTTTGACCTCAACCCAAGAACCATGGCTTAAGATCCA
JMSF014E14+           TGAAGAGAACTTCCCTTTCTGTGCTTTGACCTCAACCCAAGAACCATGGCTTAAGATCCA
JMSF006G05+           TGAAGAGAACTTCCCTTTCTGTGCTTTGACCTCAACCCAAGAACCATGGCTTAAGATCCA
                      ____________________________________________________________
consensus             TGAAGAGAACTTCCCTTTCTGTGCTTTGACCTCAACCCAAGAACCATGGCTTAAGATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS054H07+           CTCCAGACTCCAATGGCTGTAGGTAAGAGTGCTAATCAAACAACCACCAAT         
JMFS104H11+           CTCCAGACTCCAATGGCTGTAGGTAAGAGTGCTAATCAAACAACCACCAATTGATAGGAA
JMSF014E14+           CTCCAGACTCCAATGGCTGTAGGTAAGAGTGCTAATCAAACAACCACCAATTGATAGGAA
JMSF006G05+           CTCCAGACTCCAATGGCTGTAGGTAAGAGTGCTAATCAAACAACCACCAATTGATAGGAA
                      ____________________________________________________________
consensus             CTCCAGACTCCAATGGCTGTAGGTAAGAGTGCTAATCAAACAACCACCAATTGATAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H11+           AGAAAAACCTCCACCCACTTTAAAGTCAAGACTAAATTACAGTGTTTTAAGATCTCAAGT
JMSF014E14+           AGAAAAACCTCCACCCACTTTAAAGTCAAGACTAAATTACAGTGTTTTAAGATCTCAAGT
JMSF006G05+           AGAAAAACCTCCACCCACTTTAAAGTCAAGACTAAATTACAGTGTTTTAAGATCTCAAGT
                      ____________________________________________________________
consensus             AGAAAAACCTCCACCCACTTTAAAGTCAAGACTAAATTACAGTGTTTTAAGATCTCAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H11+           AGTGAGGAAGAGCAGTAAATGGCAGCGAATGTAAGAGGCAAGACCTTAAGCAATTTCCAG
JMSF014E14+           AGTGAGGAAGAGCAGTAAATGGCAGCGAATGTAAGAGGCAAGACCTTAAGCAATTTCCAG
JMSF006G05+           AGTGAGGAAGAGCAGTAAATGGCAGCGAATGTAAGAGGCAAGACCTTAAGCAATTTCCAG
                      ____________________________________________________________
consensus             AGTGAGGAAGAGCAGTAAATGGCAGCGAATGTAAGAGGCAAGACCTTAAGCAATTTCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H11+           ATTTTGAAGAAAGTATTTTTCAATTTTTGGGTATGTTTGTAGAGAGAGGTGCTGAAGAAG
JMSF014E14+           ATTTTGAAGAAAGTATTTTTCAATTTTTGGGTATGTTTGTAGAGAGAGGTGCTGAAGAAG
JMSF006G05+           ATTTTGAAGAAAGTATTTTTCAATTTTTGGGTATGTTTGTAGAGAGAGGTGCTGAAGAAG
                      ____________________________________________________________
consensus             ATTTTGAAGAAAGTATTTTTCAATTTTTGGGTATGTTTGTAGAGAGAGGTGCTGAAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H11+           CAGATGC                                                     
JMSF014E14+           CAGATGCCTTCCGTGTGGAAGTCTTACATT                              
JMSF006G05+           CAGATGCCTTCCGTGTGGAAGTCTTACATTGGAATAGAATAGTTGGCTGCTGCTAAAGTC
                      ____________________________________________________________
consensus             CAGATGCCTTCCGTGTGGAAGTCTTACATTGGAATAGAATAGTTGGCTGCTGCTAAAGTC