Contig 000592:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046C23Sequence640000592 (3)gb|EYU45552.1|1e-97hypothetical protein MIMGU_mgv1a012367mg [Erythranthe guttata]503000592 (3)ref|XP_006298642.1|3e-47hypothetical protein CARUB_v10014731mg [Capsella rubella] gb|EOA31540.1| hypothe
JMSF005J11Sequence352000592 (3)ref|XP_009352249.1|9e-36PREDICTED: probable alanine--tRNA ligase, chloroplastic isoform X1 [Pyrus x bre

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C23-                                ATGAATAAGAAAATATTCTAATACATTTGACACAAATA
                      ____________________________________________________________
consensus                                   ATGAATAAGAAAATATTCTAATACATTTGACACAAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C23-          AGAAAATAAGATGTTCAGAAGGGAGAATCTATCTTTAAAATAATGTATTACAAATTTACA
                      ____________________________________________________________
consensus             AGAAAATAAGATGTTCAGAAGGGAGAATCTATCTTTAAAATAATGTATTACAAATTTACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C23-          ATATTGCATACCTAATTCATAAAGCTACCACACTACTGAGCTTCCATGCCACTATGCAAT
                      ____________________________________________________________
consensus             ATATTGCATACCTAATTCATAAAGCTACCACACTACTGAGCTTCCATGCCACTATGCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C23-          ACAATATTACCATCTTCAGACACTGTGATTTACCGTTAGAAAGGAATGTTGTAAAATACT
                      ____________________________________________________________
consensus             ACAATATTACCATCTTCAGACACTGTGATTTACCGTTAGAAAGGAATGTTGTAAAATACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C23-          TTAGTCATTCCTTTCTTAGTCCGAATTTGAGAAACCTTCAAACTCTTGATCTCGGAGACA
                      ____________________________________________________________
consensus             TTAGTCATTCCTTTCTTAGTCCGAATTTGAGAAACCTTCAAACTCTTGATCTCGGAGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C23-          TCTGAAACATGTGTGCCCCCACAAGGGCATCCAGGGTTTTCTCCAAACTTCACAATCCGA
JMFF046C23+                                                               CAATCCGA
                      ____________________________________________________________
consensus             TCTGAAACATGTGTGCCCCCACAAGGGCATCCAGGGTTTTCTCCAAACTTCACAATCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C23-          GGAGTGCTTCCTTTGGGTATGTAATCAGGGATACTGCCACCACACAGTTGGCGGGCTTCT
JMFF046C23+           GGAGTGCTTCCTTTGGGTATGTAATCAGGGATACTGCCACCACACAGTGGGCGGGCTTCT
                      ____________________________________________________________
consensus             GGAGTGCTTCCTTTGGGTATGTAATCAGGGATACTGCCACCACACAGTTGGCGGGCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C23-          TCGTATGGAAAAGTTGAAACAGAAACTTTATCCCCCTTAGAAATCAGATTATTAGCTTCT
JMFF046C23+           TCGTATGGAAAAGTTGAAACAGAAACTTTATCCCCCTTAGAAATCAGATTATTAGCTTCT
                      ____________________________________________________________
consensus             TCGTATGGAAAAGTTGAAACAGAAACTTTATCCCCCTTAGAAATCAGATTATTAGCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C23-          GCTTCCAGCTCCTTTTGCTTAATTTGCAGTTCATTCTGTGAAACT               
JMFF046C23+           GCTTCCAGCTCCTTTTGCTTAATTTGCAGTTCATTCTGTGAAACTGTGCCTTGATACTCC
                      ____________________________________________________________
consensus             GCTTCCAGCTCCTTTTGCTTAATTTGCAGTTCATTCTGTGAAACTGTGCCTTGATACTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046C23+           ACAAATGGCCCATCTGGGAAATGGTAGCCTTTGGTCGGCTTTAAGTGACCCCATCCAATG
                      ____________________________________________________________
consensus             ACAAATGGCCCATCTGGGAAATGGTAGCCTTTGGTCGGCTTTAAGTGACCCCATCCAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046C23+           TTTGCAATACACACATCCAGCAGATGTCCAGCCGAGTGCAGCCGAGTGTTGAGCATGCGC
                      ____________________________________________________________
consensus             TTTGCAATACACACATCCAGCAGATGTCCAGCCGAGTGCAGCCGAGTGTTGAGCATGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046C23+           CTTTGCTCATCCACAGATAACGAAACTTCAGCACCTTTCTCAAGCTTCAAATTTGATACC
JMSF005J11+                   ATCCACAGATAACGAAACTTCAGCACCTTTCTCAAGCTTCAAATTTGATACC
                      ____________________________________________________________
consensus             CTTTGCTCATCCACAGATAACGAAACTTCAGCACCTTTCTCAAGCTTCAAATTTGATACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046C23+           CCATCTCCAGAATTTTCAAAAAATCCAAAGTGAAAAACAATCTGATCCTTGGATCTAACA
JMSF005J11+           CCATCTCCAGAATTTTCAAAAAATCCAAAGTGAAAAACAATCTGATCCTTGGATCTAACA
                      ____________________________________________________________
consensus             CCATCTCCAGAATTTTCAAAAAATCCAAAGTGAAAAACAATCTGATCCTTGGATCTAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046C23+           TCTTGGACAACAAATTTGAGGTTCGAACGGGAAATAAAACCAGTGTCTGCGGGTTGACCT
JMSF005J11+           TCTTGGACAACAAATTTGAGGTTCGAACGGGAAATAAAACCAGTGTCTGCGGGTTGACCT
                      ____________________________________________________________
consensus             TCTTGGACAACAAATTTGAGGTTCGAACGGGAAATAAAACCAGTGTCTGCGGGTTGACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046C23+           CCACCTTGCGGATGAAAAATTGATGAGTCCAGAATAATCACATCTCTACCATCTTCCCCC
JMSF005J11+           CCACCTTGCGGATGAAAAATTGATGAGTCCAGAATAATCACATCTCTACCATCTTCCCCC
                      ____________________________________________________________
consensus             CCACCTTGCGGATGAAAAATTGATGAGTCCAGAATAATCACATCTCTACCATCTTCCCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046C23+           CGAAAGGAAGAAAGAAGGGTAGCAGTAGTATGAAGCTTAGACATGTTGTCAAAGTATTCC
JMSF005J11+           CGAAAGGAAGAAAGAAGGGTAGCAGTAGTATGAAGCTTAGACATGTTGTCAAAGTATTCC
                      ____________________________________________________________
consensus             CGAAAGGAAGAAAGAAGGGTAGCAGTAGTATGAAGCTTAGACATGTTGTCAAAGTATTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046C23+           AGCTTTGTTGCTGGGGGCAAATTTTGTTCC                              
JMSF005J11+           AGCTTTGTTGCTGGGGGCAAATTTTGTTCCATGCTGCTAACTGTCTAGTTTCCTATGCTC
                      ____________________________________________________________
consensus             AGCTTTGTTGCTGGGGGCAAATTTTGTTCCATGCTGCTAACTGTCTAGTTTCCTATGCTC