Contig 000589:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010E02Sequence640000589 (11)ref|XP_009795347.1|2e-112PREDICTED: 60S ribosomal protein L13-1 [Nicotiana sylvestris]
JMFF027K20Sequence728000589 (11)ref|XP_009795347.1|1e-103PREDICTED: 60S ribosomal protein L13-1 [Nicotiana sylvestris]
JMFN030L17Sequence651000589 (11)ref|XP_009795347.1|6e-111PREDICTED: 60S ribosomal protein L13-1 [Nicotiana sylvestris]
JMFN035K03Sequence616000589 (11)ref|XP_011075827.1|2e-110PREDICTED: 60S ribosomal protein L13-1-like [Sesamum indicum]
JMFN036F01Sequence604000589 (11)ref|XP_011075827.1|9e-110PREDICTED: 60S ribosomal protein L13-1-like [Sesamum indicum]
JMFN044N19Sequence616000589 (11)ref|XP_009795347.1|1e-107PREDICTED: 60S ribosomal protein L13-1 [Nicotiana sylvestris]
JMSF005E07Sequence292000589 (11)ref|XP_007156319.1|5e-35hypothetical protein PHAVU_003G276400g [Phaseolus vulgaris] ref|XP_007156320.1|
JMSF011K09Sequence491000589 (11)ref|XP_010054042.1|6e-78PREDICTED: 60S ribosomal protein L13-2 [Eucalyptus grandis] gb|KCW78426.1| hypot749000589 (11)ref|XP_004146887.1|3e-112PREDICTED: 60S ribosomal protein L13-2-like isoform 1 [Cucumis sativus] ref|XP_
JMSF037F21Sequence652000589 (11)ref|XP_009795347.1|2e-112PREDICTED: 60S ribosomal protein L13-1 [Nicotiana sylvestris]681000589 (11)ref|XP_009795347.1|1e-104PREDICTED: 60S ribosomal protein L13-1 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037F21-                                                 CTATTTCTTGTCTTCCTTCTC
rJMSF011K09-                                                 CTATTTCTTGTCTTCCTTCTC
rJMFF027K20-                                                 CTATTTCTTGTCTTCCTTCTC
JMFN030L17+                                     TCCAAGCATCTCTCTATTTCTGTTCTTCCTTCTC
                      ____________________________________________________________
consensus                                       TCCAAGCATCTCTCTATTTCTTGTCTTCCTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F21+                               GCCTAGCACCCATATGACGCTCGTTCGTCCGTTCCAGACG
rJMSF037F21-          TGCCTCAGCAGCCCTCTTAAGCCTAGCACCCATATGACGCTCGTTCGTCCGTTCCAGACG
rJMSF011K09-          TGCCTCAGCAGCCCTCTTAAGCCTAGCACCCATATGACGCTCGTTCGTCCGTTCCAGACG
rJMFF027K20-          TGCCTCAGCAGCCCTCTTAAGCCTAGCACCCATATGACGCTCGTTCGTCCGTTCCAGACG
JMFN030L17+           TGCCTCAGCAGCCCTC-TAAGCCTAGCACCCATATGACGCTCGTTCGTCCGTTCCAGACG
JMFN036F01+                                        CCATATGACGCTCGTTCGTCCGTTCCAGACG
JMFN035K03+                                       CCCATATGACGCTCGTTCGTCCGTTCCAGACG
JMFN044N19+                                        CCATATGACGCTCGTTCGTCCGTTCCAGACG
JMFF010E02+                              AGCCTAGCACCCATATGACGCTCGTTCGTCCGTTCCAGACG
                      ____________________________________________________________
consensus             TGCCTCAGCAGCCCTCTTAAGCCTAGCACCCATATGACGCTCGTTCGTCCGTTCCAGACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F21+           CAGCTTGTCATAAGCCTTGAATGATTTCATTTCTTCTGTGATCTTAACAAGCTCCACTGA
rJMSF037F21-          CAGCTTGTCATAAGCCTTGAATGATTTCATTTCTTCTGTGATCTTAACAAGCTCCACTGA
rJMSF011K09-          CAGCTTGTCATAAGCCTTGAATGATTTCATTTCTTCTGTGATCTTAACAAGCTCCACTGA
rJMFF027K20-          CAGCTTGTCATAAGCCTTGAATGATTTCATTTCTTCTGTGATCTTAACAAGCTCCACTGA
JMFN030L17+           CAGCTTGTCATAAGCCTTGAATGATNTCATTTCTTCTGTGATCTTAACAAGCTCCACTGA
JMFN036F01+           CAGCTTGTCATAAGCCTTGAATGATNTCATTTCTTCTGTGATCTTAACAAGCTCCACTGA
JMFN035K03+           CAGCTTGTCATAAGCCTTGAATGATTTCATTTCTTCTGTGATCTTAACAAGCTCCACTGA
JMFN044N19+           CAGCTTGTCATAAGCCTGNAATGATTTCATTTCTTCTGTGATCTANACAAGCTCCACTGA
JMFF010E02+           CAGCTTGTCATAAGCCTTGAATGATTTCATTTCTTCTGTGATCTTAACAAGCTCCACTGA
                      ____________________________________________________________
consensus             CAGCTTGTCATAAGCCTTGAATGATTTCATTTCTTCTGTGATCTTAACAAGCTCCACTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F21+           TGGTTTGTCCCGTCCGATGGGCAAGTAAGCACCATGGACTTGGGTTGCAGTGGCTAATTC
rJMSF037F21-          TGGTTTGTCCCGTCCGATGGGCAAGTAAGCACCATGGACTTGGGTTGCAGTGGCTAATTC
rJMSF011K09-          TGGTTTGTCCCGTCCGATGGGCAAGTAAGCACCATGGACTTGGGTTGCAGTGGCTAATTC
rJMFF027K20-          TGGTTTGTCCCGTCCGATGGGCAAGTAAGCACCATGGACTTGGGTTGCAGTGGCTAATTC
JMFN030L17+           TGGTTTGTCCCGTCCGATGGGCAAGTAAGCACCATGGACTTGGGTTGCAGTGGCTAATTC
JMFN036F01+           TGGTTTGTCCCGTCCGATGGGCAAGTAAGCACCATGGACTTGGGTTGCAGTGGCTAATTC
JMFN035K03+           TGGTTTGTCCCGTCCGATGGGCAAGTAAGCACCATGGACTTGGGTTGCAGTGGCTAATTC
JMFN044N19+           TGGTTTGTCCCGTCCGATGGGCAAGTAAGCACCATGGACTTGGGTTGCAGTGGCTAATTC
JMFF010E02+           TGGTTTGTCCCGTCCGATGGGCAAGTAAGCACCATGGACTTGGGTTGCAGTGGCTAATTC
                      ____________________________________________________________
consensus             TGGTTTGTCCCGTCCGATGGGCAAGTAAGCACCATGGACTTGGGTTGCAGTGGCTAATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F21+           CTCAGCAGTAGAATCACCAGCCTTAAATTTGCGTGCACGTCTTGGGAAGACAACCAATTT
rJMSF037F21-          CTCAGCAGTAGAATCACCAGCCTTAAATTTGCGTGCACGTCTTGGGAAGACAACCAATTT
rJMSF011K09-          CTCAGCAGTAGAATCACCAGCCTTAAATTTGCGTGCACGTCTTGGGAAGACAACCAATTT
rJMFF027K20-          CTCAGCAGTAGAATCACCAGCCTTAAATTTGCGTGCACGTCTTGGGAAGACAACCAATTT
JMFN030L17+           CTCAGCAGTAGAATCACCAGCCTTAAATTTGCGTGCACGTCTTGGGAAGACAACCAATTT
JMFN036F01+           CTCAGCAGTAGAATCACCAGCCTTAAATTTGCGTGCGCGTCTTGGGAAGACAACCAATTT
JMSF011K09+            TCAGCAGTAGAATCACCAGCCTTAAATTTGCGTGCACGTCTTGGGAAGACAACCAATTT
JMFN035K03+           CTCAGCAGTAGAATCACCAGCCTTAAATTTGCGTGCACGTCTTGGGAAGACAACCAATTT
JMFN044N19+           CTCAGCAGTAGAATCACCAGCCTTAAATTTGCGTGCACGTCTTGGGAAGACAACCAATTT
JMFF010E02+           CTCAGCAGTAGAATCACCAGCCTTAAATTTGCGTGCACGTCTTGGGAAGACAACCAATTT
                      ____________________________________________________________
consensus             CTCAGCAGTAGAATCACCAGCCTTAAATTTGCGTGCACGTCTTGGGAAGACAACCAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F21+           GGCTTTGTAGGTCTTCAGCCTCTGAACATTAGTCTGGAGACCCTCAAGAGAAGAGTTTCT
rJMSF037F21-          GGCTTTGTAGGTCTTCAGCCTCTGAACATTAGTCTGGAGACCCTCAAGAGAAGAGTTTCT
rJMSF011K09-          GGCTTTGTAGGTCTTCAGCCTCTGAACATTAGTCTGGAGACCCTCAAGAGAAGAGTTTCT
rJMFF027K20-          GGCTTTGTAGGTCTTCAGCCTCTGAACATTAGTCTGGAGACCCTCAAGAGAAGAGTTTCT
JMFN030L17+           GGCTTTGTAGGTCTTCAGCCTCTGAACATTAGTCTGGAGACCCTCAAGAGAAGAGTTTCT
JMFN036F01+           GGCTTTGTAGGTCTTCAGCCTCTGAACATTAGTCTGGAGACCCTCAAGAGAAGAGTTTCT
JMSF011K09+           GGCTTTGTAGGTCTTCAGCCTCTGAACATTAGTCTGGAGACCCTCAAGAGAAGAGTTTCT
JMFN035K03+           GGCTTTGTAGGTCTTCAGCCTCTGAACATTAGTCTGGAGACCCTCAAGAGAAGAGTTTCT
JMFN044N19+           GGCTTTGTAGGTCTTCAGCCTCTGAACATTAGTCTGGAGACCCTCAAGAGAAGAGTTTCT
JMFF010E02+           GGCTTTGTAGGTCTTCAGCCTCTGAACATTAGTCTGGAGACCCTCAAGAGAAGAGTTTCT
                      ____________________________________________________________
consensus             GGCTTTGTAGGTCTTCAGCCTCTGAACATTAGTCTGGAGACCCTCAAGAGAAGAGTTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F21+           GCGGCGGTGATCAACTGAAATGCCAATTGTGGGAGCCAGCTTCTTTGGGATGCCTGCAGC
rJMSF037F21-          GCGGCGGTGATCAACTGAAATGCCAATTGTGGGAGCCAGCTTCTTTGGGATGCCTGCAGC
rJMSF011K09-          GCGGCGGTGATCAACTGAAATGCCAATTGTGGGAGCCAGCTTCTTTGGGATGCCTGCAGC
rJMFF027K20-          GCGGCGGTGATCAACTGAAATGCCAATTGTGGGAGCCAGCTTCTTTGGGATGCCTGCAGC
JMFN030L17+           GCGGCGGTGATCAACTGAAATGCCAATTGTGGGAGCCAGCTTCTTTGGGATGCCTGCAGC
JMFN036F01+           GCGGCGGTGATCAACTGAAATGCCAATTGTGGGAGCCAGCTTCTTTGGGATGCCTGCAGC
JMSF011K09+           GCGGCGGTGATCAACTGAAATGCCAATTGTGGGAGCCAGCTTCTTTGGGATGCCTGCAGC
JMFN035K03+           GCGGCGGTGATCAACTGAAATGCCAATTGTGGGAGCCAGCTTCTTTGGGATGCCTGCAGC
JMFN044N19+           GCGGCGGTGATCAACTGAAATGCCAATTGTGGGAGCCAGCTTCTTTGGGATGCCTGCAGC
JMFF010E02+           GCGGCGGTGATCAACTGAAATGCCAATTGTGGGAGCCAGCTTCTTTGGGATGCCTGCAGC
                      ____________________________________________________________
consensus             GCGGCGGTGATCAACTGAAATGCCAATTGTGGGAGCCAGCTTCTTTGGGATGCCTGCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F21+           CTTAAGCTCCTCAAGGGAGAATCCCCTTCCAGCTCTAACCTTCATGTTGTACTTGAGGGT
rJMSF037F21-          CTTAAGCTCCTCAAGGGAGAATCCCCTTCCAGCTCTAACCTTCATGTTGTACTTGAGGGT
rJMSF011K09-          CTTAAGCTCCTCAAGGGAGAATCCCCTTCCAGCTCTAACCTTCATGTTGTACTTGAGGGT
rJMFF027K20-          CTTAAGCTCCTCAAGGGAGAATCCCCTTCCAGCTCTAACCTTCATGTTGTACTTGAGGGT
JMFN030L17+           CTTAAGCTCCTCAAGGGAGAATCCCCTTCCAGCTCTAACCTTCATGTTGTACTTGAGGGT
JMFN036F01+           CTTAAGCTCCTCAAGGGAGAATCCCCTTCCAGCTCTAACCTTCATGTTGTACTTGAGGGT
JMSF011K09+           CTTAAGCTCCTCAAGGGAGAATCCCCTTCCAGCTCTAACCTTCATGTTGTACTTGAGGGT
JMFN035K03+           CTTAAGCTCCTCAAGGGAGAATCCCCTTCCAGCTCTAACCTTCATGTTGTACTTGAGGGT
JMFN044N19+           CTTAAGCTCCTCAAGGGAGAATCCCCTTCCAGCTCTAACCTTCATGTTGTACTTGAGGGT
JMFF010E02+           CTTAAGCTCCTCAAGGGAGAATCCCCTTCCAGCTCTAACCTTCATGTTGTACTTGAGGGT
JMSF005E07+                   CCTCAAGGGAGAATCCCCTTCCAGCTCTAACCTTCATGTTGTACTTGAGGGT
                      ____________________________________________________________
consensus             CTTAAGCTCCTCAAGGGAGAATCCCCTTCCAGCTCTAACCTTCATGTTGTACTTGAGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F21+           CTGTCCATGGACAATAGGGCGGAGAGCCCCAGCAGTTGGCCTGGGGAAAATTTTCACAGC
rJMSF037F21-          CTGTCCATGGACAATAGGGCGGAGAGCCCCAGCAGTTGGCCTGGGGAAAATTTTCACAGC
rJMSF011K09-          CTGTCCATGGACAATAGGGCGGAGAGCCCCAGCAGTTGGCCTGGGGAAAATTTTCACAGC
rJMFF027K20-          CTGTCCATGGACAATAGGGCGGAGAGCCCCAGCAGTTGGCCTGGGGAAAATTTTCACAGC
JMFN030L17+           CTGTCCATGGACAATAGGGCGGAGAGCCCCAGCAGTTGGCCTGGGGAAAATTTTCACAGC
JMFN036F01+           CTGTCCATGGACAATAGGGCGGAGAGCCCCAGCAGTTGGCCTGGGGAAAATTTTCACAGC
JMSF011K09+           CTGTCCATGGACAATAGGGCGGAGAGCCCCAGCAGTTGGCCTGGGGAAAATTTTCACAGC
JMFN035K03+           CTGTCCATGGACAATAGGGCGGAGAGCCCCAGCAGTTGGCCTGGGGAAAATTTTCACAGC
JMFN044N19+           CTGTCCATGGACAATAGGGCGGAGAGCCCCAGCAGTTGGCCTGGGGAAAATTTTCACAGC
JMFF010E02+           CTGTCCATGGACAATAGGGCGGAGAGCCCCAGCAGTTGGCCTGGGGAAAATTTTCACAGC
JMSF005E07+           CTGTCCATGGACAATAGGGCGGAGAGCCCCAGCAGTTGGCCTGGGGAAAATTTTCACAGC
                      ____________________________________________________________
consensus             CTGTCCATGGACAATAGGGCGGAGAGCCCCAGCAGTTGGCCTGGGGAAAATTTTCACAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F21+           CTTCTTTTGTCT                                                
rJMSF037F21-          CTTCTTTTGTCTGGCAACTCTTCTCCTTTGCTTGCGTGCAGGTTGGTTGAACCATGTCCT
rJMSF011K09-          CTTCTTTTGTCTGGCAACTCTTCTCCTTTGCTTGCGTGCAGGTTGGTTGAACCATGTCCT
rJMFF027K20-          CTTCTTTTGTCTGGCAACTCTTCTCCTTTGCTTGCGTGCAGGTTGGTTGAANCATGTCCT
JMFN030L17+           CTTCTTTTGTCTGGCAACTCTTCTCCTTTGCTTGCGTGCAGGTTGGTTGAACCATGTCCT
JMFN036F01+           CTTCTTTTGTCTGGCAACTCTTCTCCTTTGCTTGCGTGCAGGTTGGTTGAACCATGTCCT
JMSF011K09+           CTTCTTTTGTCT                                                
JMFN035K03+           CTTCTTTTGTCTGGCAACTCTTCTCCTTTGCTTGCGTGCAGGTTGGTTGAACCATGTCCT
JMFN044N19+           CTTCTTTTGTCTGGCAACTCTTCTCCTTTGCTTGCGTGCAGGTTGGTTGAACCATGTCCT
JMFF010E02+           CTTCTTTTGTCTGGCAACTCTTCTCCTTTGCTTGCGTGCAGGTTGGTTGAACCATGTCCT
JMSF005E07+           CTTCTTTTGTCTGGCAACTCTTCTCCTTTGCTTGCGTGCAGGTTGGTTGAACCATGTCCT
                      ____________________________________________________________
consensus             CTTCTTTTGTCTGGCAACTCTTCTCCTTTGCTTGCGTGCAGGTTGGTTGAACCATGTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037F21-          CACATAGTTCTGCCAGTGCTTCCTGAAGTG                              
rJMSF011K09-          CACATAGTTCTGCCAGTGCTTCCTGAAGTGCCCACTTGGTATAACATTGTTATGTTTCAT
rJMFF027K20-          CACATAGTTCTGCCAGTGCTTCCTGAAGTGCCCACTTG                      
JMFN030L17+           CACATAGTTCTGCCAGTGCTTCCTGAAGTGCCCACTTGGTATAACATTGTTATGTTTCAT
JMFN036F01+           CACATAGTTCTGCCAGTGCTTCCTGAAGTGCCCACTTGGTATAACATTGTTATGTTTCAT
JMFN035K03+           CACATAGTTCTGCCAGTGCTTCCTGAAGTGCCCACTTGGTATAACATTGTTATGTTTCAT
JMFN044N19+           CACATAGTTCTGCCAGTGCTTCCTGAAGTGCCCACTTGGTATAACATTGTTATGTTTCAT
JMFF010E02+           CACATAGTTCTGCCAGTGCTTCCTGAAGTGCCCACTTGGTATAACATTGTTATGTTTCAT
JMSF005E07+           CACATAGTTCTGCCAGTGCTTCCTGAAGTGCCCACTTGGTATAACATTGTTATGTTTCAT
                      ____________________________________________________________
consensus             CACATAGTTCTGCCAGTGCTTCCTGAAGTGCCCACTTGGTATAACATTGTTATGTTTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011K09-          GGCTTACCTTTAGCGCC                                           
JMFN030L17+           GGCTTACCTTTAGCGCCG                                          
JMFN036F01+           GGCTTACCTTTAGCGCCGACGAGGACCACCGAG                           
JMFN035K03+           GGCTTACCTTTAGCGCCGACGAGGACCACCGAGAAGAGCTTCGT                
JMFN044N19+           GGCTTACCTTTAGCGCCGACGAGGACCACCGAGAAGAGCTTCGTT               
JMFF010E02+           GGCTTACCTTTAGCGCCGACGAGGACCACCGAGAAGAGCTTCGTTGCCTGAGCTGCTGT 
JMSF005E07+           GGCTTACCTTTAGCGCCGACGAGGACCACCGAGAAGAGCTTCGTTGCCTGAGCTGCTGTC
                      ____________________________________________________________
consensus             GGCTTACCTTTAGCGCCGACGAGGACCACCGAGAAGAGCTTCGTTGCCTGAGCTGCTGTC