Contig 000587:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005B04Sequence304000587 (2)ref|XP_011094122.1|1e-21PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Sesamum indi
JMSF027D04Sequence683000587 (2)ref|XP_011094122.1|6e-106PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Sesamum indi746011337 (2)ref|XP_006364902.1|1e-121PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Solanum

Alignment

This contig is upended


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JMSF027D04+                                       CGAAGGACGGAATACAAATGCTGGATCATGTA
                      ____________________________________________________________
consensus                                         CGAAGGACGGAATACAAATGCTGGATCATGTA
 
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JMSF027D04+           ATGTATTGTCAAATAAGTCAATGTAAAATCCCTCATTTCCAGAAGTGGCAGCCATCATCC
                      ____________________________________________________________
consensus             ATGTATTGTCAAATAAGTCAATGTAAAATCCCTCATTTCCAGAAGTGGCAGCCATCATCC
 
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JMSF027D04+           GATGCCGTTTAATTTTCCAATTTTGCTGCAACCTTATCAAAGCACCATAAAATCTTGCTT
                      ____________________________________________________________
consensus             GATGCCGTTTAATTTTCCAATTTTGCTGCAACCTTATCAAAGCACCATAAAATCTTGCTT
 
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JMSF027D04+           CCCTAGCTACCTGCTTCTCCAATGCTTTTGCAGATTGCTTAAAATACTTCCCAAAGTGCC
                      ____________________________________________________________
consensus             CCCTAGCTACCTGCTTCTCCAATGCTTTTGCAGATTGCTTAAAATACTTCCCAAAGTGCC
 
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JMSF027D04+           GAAAACTTTGCAGCTTGGTGGTCATAGATACAGCAAGGTCAGATAGAAGCTCATTAGGTA
                      ____________________________________________________________
consensus             GAAAACTTTGCAGCTTGGTGGTCATAGATACAGCAAGGTCAGATAGAAGCTCATTAGGTA
 
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JMSF027D04+           ATTGCTTCGGCCTGGTCATGCTAGCCACTGTTACTGCATCATTTGCTTCCACAGTATTGA
                      ____________________________________________________________
consensus             ATTGCTTCGGCCTGGTCATGCTAGCCACTGTTACTGCATCATTTGCTTCCACAGTATTGA
 
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JMSF027D04+           TGAGATCGATGATGACAGAGAGCTCTTGATGAGCCAGCTGCAAATTCTCCACCAAGCTCT
JMSF005B04+                                                                   CTCT
                      ____________________________________________________________
consensus             TGAGATCGATGATGACAGAGAGCTCTTGATGAGCCAGCTGCAAATTCTCCACCAAGCTCT
 
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JMSF027D04+           GCCACGGCCATGGTTGATTGGCGCTTGTCTCCTTGGACGAAGAACTCGAGTCTGCACTAC
JMSF005B04+           GCCACGGCCATGGTTGATTGGCGCTTGTCTCCTTGGACGAAGAACTCGAGTCTGCACTAC
                      ____________________________________________________________
consensus             GCCACGGCCATGGTTGATTGGCGCTTGTCTCCTTGGACGAAGAACTCGAGTCTGCACTAC
 
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JMSF027D04+           TCTTCTTCTGCTTCTTACTCGGATCCTCTCTCTCCACCGCCCACGCGAAGTCAATTCTCC
JMSF005B04+           TCTTCTTCTGCTTCTTACTCGGATCCTCTCTCTCCACCGCCCACGCGAAGTCAATTCTCC
                      ____________________________________________________________
consensus             TCTTCTTCTGCTTCTTACTCGGATCCTCTCTCTCCACCGCCCACGCGAAGTCAATTCTCC
 
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JMSF027D04+           TTATCAAGCTCACCGTTTTCTCATCGTACCCAACATCGCTTGAAGGAAACCGTTCGTCGC
JMSF005B04+           TTATCAAGCTCACCGTTTTCTCATCGTACCCAACATCGCTTGAAGGAAACCGTTCGTCGC
                      ____________________________________________________________
consensus             TTATCAAGCTCACCGTTTTCTCATCGTACCCAACATCGCTTGAAGGAAACCGTTCGTCGC
 
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JMSF027D04+           CGTTTTCTTCGACGAACTCTACGCGTTTGATTGGGAGCTTGTCGAGGGAAATTTGGAGGT
JMSF005B04+           CGTTTTCTTCGACGAACTCTACGCGTTTGATTGGGAGCTTGTCGAGGGAAATTTGGAGGT
                      ____________________________________________________________
consensus             CGTTTTCTTCGACGAACTCTACGCGTTTGATTGGGAGCTTGTCGAGGGAAATTTGGAGGT
 
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JMSF027D04+           CTTCTTCCATGTTCACCGGGATTTCATCGGGAATTTCTGAAATGAACCC           
JMSF005B04+           CTTCTTCCATGTTCACCGGGATTTCATCGGGAATTTCTGAAATGAACCCTAATTGAGATT
                      ____________________________________________________________
consensus             CTTCTTCCATGTTCACCGGGATTTCATCGGGAATTTCTGAAATGAACCCTAATTGAGATT