Contig 000586:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS154B10Sequence626000586 (4)
JMSF004O22Sequence272000586 (4)401019219
JMSF009K01Sequence415000586 (4)749009908 (3)ref|XP_004232619.1|2e-70PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum] ref|XP_0
JMSF024C19Sequence645000586 (4)755009908 (3)ref|XP_006344273.1|2e-62PREDICTED: probable splicing factor 3A subunit 1-like isoform X1 [Solanum tuber

Alignment

This contig is upended


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JMSF024C19+              GTGGGGCAGGGAGCGGCAATATGGGCAAGGAACCCAACATCTTCTTGTCTCTTAACT
JMFS154B10+                                      GCAAGGAACCCAACATCTTCTTGTCTCTTAACT
                      ____________________________________________________________
consensus                GTGGGGCAGGGAGCGGCAATATGGGCAAGGAACCCAACATCTTCTTGTCTCTTAACT
 
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JMSF024C19+           TGTCTTTCGCACCCAATACAACAATATTAGAGCTCTCATCAGAAACAATATGCTGCCTAT
JMFS154B10+           TGTCTTTCGCACCCAATACAACAATATTAGAGCTCTCATCAGAAACAATATGCTGCCTAT
                      ____________________________________________________________
consensus             TGTCTTTCGCACCCAATACAACAATATTAGAGCTCTCATCAGAAACAATATGCTGCCTAT
 
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JMSF024C19+           TTATTGTGAAGTTGAGGTTCTACAAAAAGTTCTGAACCTCAGAAATGAGGTTTGGCAAAT
JMFS154B10+           TTATTGTGAAGTTGAGGTTCTACAAAAAGTTCTGAACCTCAGAAATGAGGTTTGGCAAAT
                      ____________________________________________________________
consensus             TTATTGTGAAGTTGAGGTTCTACAAAAAGTTCTGAACCTCAGAAATGAGGTTTGGCAAAT
 
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JMSF024C19+           TGCGGAACCTCTTAGCTGTACCTCAAGCTTTTTTGGTTCTTCAAAACTTCCTCCTTACCA
JMFS154B10+           TGCGGAACCTCTTAGCTGTACCTCAAGCTTTTTTGGTTCTTCAAAACTTCCTCCTTACCA
                      ____________________________________________________________
consensus             TGCGGAACCTCTTAGCTGTACCTCAAGCTTTTTTGGTTCTTCAAAACTTCCTCCTTACCA
 
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JMSF024C19+           GTAGATTAGGGGTGAGCAACCGGTTGACCGGTCACATAACCGACCAGAAAAGGGAATTTT
JMFS154B10+           GTAGATTAGGGGTGAGCAACCGGTTGACCGGTCACATAACCGACCAGAAAAGGGAATTTT
                      ____________________________________________________________
consensus             GTAGATTAGGGGTGAGCAACCGGTTGACCGGTCACATAACCGACCAGAAAAGGGAATTTT
 
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JMSF024C19+           CACCGCCATCACCGACCGACCTACCCTGACTGACTGAGGCCTGACGCCTGGGGGGAGAGG
JMSF009K01+                                   CCTGACTGACTGAGGCCTGACGCCTGGGGGGAGAGG
JMFS154B10+           CACCGCCATCACCGACCGACCTACCCTGACTGACTGAGGCCTGACGCCTGGGGGGAGAGG
                      ____________________________________________________________
consensus             CACCGCCATCACCGACCGACCTACCCTGACTGACTGAGGCCTGACGCCTGGGGGGAGAGG
 
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JMSF024C19+           GCGTCCGCCGGAGAGCGTGAGGGAGAAAGGGAGAGGAGCGAGGGCGTTTGCTTCACTGAT
JMSF009K01+           GCGTCCGCCGGAGAGCGTGAGGGAGAAAGGGAGAGGAGCGAGGGCGTTTGCTTCACTGAT
JMFS154B10+           GCGTCCGCCGGAGAGCGTGAGGGAGAAAGGGAGAGGAGCGAGGGCGTTTGCTTCACTGAT
JMSF004O22+                                       GGGAGAGGAGCGAGGGCGTTTGCTTCACTGAT
                      ____________________________________________________________
consensus             GCGTCCGCCGGAGAGCGTGAGGGAGAAAGGGAGAGGAGCGAGGGCGTTTGCTTCACTGAT
 
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JMSF024C19+           AAACTTGAAGGCTGAATCCCAGTCTCCCAGATTCTCAGATTCCAAATTTTTCTGCCGTCG
JMSF009K01+           AAACTTGAAGGCTGAATCCCAGTCTCCCAGATTCTCAGATTCCAAATTTTTCTGCCGTCG
JMFS154B10+           AAACTTGAAGGCTGAATCCCAGTCTCCCAGATTCTCAGATTCCAAATTTTTCTGCCGTCG
JMSF004O22+           AAACTTGAAGGCTGAATCCCAGTCTCCCAGATTCTCAGATTCCAAATTTTTCTGCCGTCG
                      ____________________________________________________________
consensus             AAACTTGAAGGCTGAATCCCAGTCTCCCAGATTCTCAGATTCCAAATTTTTCTGCCGTCG
 
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JMSF024C19+           CCCGGTCGCGAAAAAATTCGACAATACAACCGTTGAGGACTGATGTGCTGCGCGAACGGC
JMSF009K01+           CCCGGTCGCGAAAAAATTCGACAATACAACCGTTGAGGACTGATGTGCTGCGCGAACGGC
JMFS154B10+           CCCGGTCGCGAAAAAATTCGACAATACAACCGTTGAGGACTGATGTGCTGCGCGAACGGC
JMSF004O22+           CCCGGTCGCGAAAAAATTCGACAATACAACCGTTGAGGACTGATGTGCTGCGCGAACGGC
                      ____________________________________________________________
consensus             CCCGGTCGCGAAAAAATTCGACAATACAACCGTTGAGGACTGATGTGCTGCGCGAACGGC
 
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JMSF024C19+           TACTCTTGAGAATCCAAACCTTCGCTATGGGCCTATGGCTCAGGCTGGACGGCGTGGGAA
JMSF009K01+           TACTCTTGAGAATCCAAACCTTCGCTATGGGCCTATGGCTCAGGCTGGACGGCGTGGGAA
JMFS154B10+           TACTCTTGAGAATCCAAACCTTCGCTATGGGCCTATGGCTCAGGCTGGACGGCGTGGGAA
JMSF004O22+           TACTCTTGAGAATCCAAACCTTCGCTATGGGCCTATGGCTCAGGCTGGACGGCGTGGGAA
                      ____________________________________________________________
consensus             TACTCTTGAGAATCCAAACCTTCGCTATGGGCCTATGGCTCAGGCTGGACGGCGTGGGAA
 
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JMSF024C19+           AGACAAACAGATGGGTCGTTGAGACGTTGAGTTCGCACTTTGTCTTC             
JMSF009K01+           AGACAAACAGATGGGTCGTTGAGACGTTGAGTTCGCACTTTGTCTTC             
JMFS154B10+           AGACAAACAGATGGGTCGTTGAGACGTTGAGTTCGCACTTTGTCTTC             
JMSF004O22+           AGACAAACAGATGGGTCGTTGAGACGTTGAGTTCGCACTTTGTCTTCGTCTTCGCTTACC
                      ____________________________________________________________
consensus             AGACAAACAGATGGGTCGTTGAGACGTTGAGTTCGCACTTTGTCTTCGTCTTCGCTTACC