Contig 000584:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004N05Sequence398000584 (2)ref|XP_009790324.1|3e-36PREDICTED: heat stress transcription factor A-1b [Nicotiana sylvestris]284006647 (13)dbj|BAD02268.1|2e-16aspartate aminotransferase [Nicotiana tabacum]
JMSF042D10Sequence795000584 (2)ref|XP_009790324.1|5e-108PREDICTED: heat stress transcription factor A-1b [Nicotiana sylvestris]751024654ref|XP_009790324.1|3e-42PREDICTED: heat stress transcription factor A-1b [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF042D10+                                       CACTCCAGAAATGCGCACTTTGTCACTNTGCT
                      ____________________________________________________________
consensus                                         CACTCCAGAAATGCGCACTTTGTCACTNTGCT
 
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JMSF042D10+           GATGAACCATCTGGGCTACAAAACTAGGGCTTTGCATGGCCTTTGCAAGGAATGACATCA
                      ____________________________________________________________
consensus             GATGAACCATCTGGGCTACAAAACTAGGGCTTTGCATGGCCTTTGCAAGGAATGACATCA
 
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JMSF042D10+           TTTGCTGCTGCCGCTGTTCCATCATATGAACCTTCTGCCCAACATTCTGCAACTGGTGAT
                      ____________________________________________________________
consensus             TTTGCTGCTGCCGCTGTTCCATCATATGAACCTTCTGCCCAACATTCTGCAACTGGTGAT
 
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JMSF042D10+           CTGTTGCCTGCTGCTGTTGTCTCAACTTGACAAGCTCCTGCATGAGAATATTTTTATCTC
                      ____________________________________________________________
consensus             CTGTTGCCTGCTGCTGTTGTCTCAACTTGACAAGCTCCTGCATGAGAATATTTTTATCTC
 
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JMSF042D10+           TTTTAAGCCTATCCACCTCTTCCTCTAGCCCAAATTTCCCAACTTCAACACATGATCCAA
                      ____________________________________________________________
consensus             TTTTAAGCCTATCCACCTCTTCCTCTAGCCCAAATTTCCCAACTTCAACACATGATCCAA
 
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JMSF042D10+           CTGAACTGTTTTGAACTTGAGGTGGTGGTGGTTGATGTGACTGCACATGCTTTCTCCTGG
                      ____________________________________________________________
consensus             CTGAACTGTTTTGAACTTGAGGTGGTGGTGGTTGATGTGACTGCACATGCTTTCTCCTGG
 
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JMSF042D10+           TTATACTCTTTAAGAGGTGTCTATGACCTCTAAGAAATCCCTCATTAGCAAACTCCCAGC
                      ____________________________________________________________
consensus             TTATACTCTTTAAGAGGTGTCTATGACCTCTAAGAAATCCCTCATTAGCAAACTCCCAGC
 
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JMSF042D10+           GATCAGGGTCGACTTTCCTGAACCCGTAAGTGTTCAATTGTCTGACAAAACTGGAGAAAT
JMSF004N05+                                 CCCGTAAGTGTTCAATTGTCTGACAAAACTGGAGAAAT
                      ____________________________________________________________
consensus             GATCAGGGTCGACTTTCCTGAACCCGTAAGTGTTCAATTGTCTGACAAAACTGGAGAAAT
 
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JMSF042D10+           TGTTGTGCTTGAAGTACTTGGGCAAAATATCTTTAGCGAACTCGGGGACGTTCCACACGA
JMSF004N05+           TGTTGTGCTTGAAGTACTTGGGCAAAATATCTTTAGCGAACTCGGGGACGTTCCACACGA
                      ____________________________________________________________
consensus             TGTTGTGCTTGAAGTACTTGGGCAAAATATCTTTAGCGAACTCGGGGACGTTCCACACGA
 
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JMSF042D10+           CGAAACTGTTATTGCTCTTGCTCCAGGACACCACGGCGTCCGTCGACGGATCCTCCACCA
JMSF004N05+           CGAAACTGTTATTGCTCTTGCTCCAGGACACCACGGCGTCCGTCGACGGATCCTCCACCA
                      ____________________________________________________________
consensus             CGAAACTGTTATTGCTCTTGCTCCAGGACACCACGGCGTCCGTCGACGGATCCTCCACCA
 
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JMSF042D10+           TATCATACGTTTTGCTCAGAAAAGGCGGCGGCGAATTCCCGGCAGCCGCGGCGGCGCTTT
JMSF004N05+           TATCATACGTTTTGCTCAGAAAAGGCGGCGGCGAATTCCCGGCAGCCGCGGCGGCGCTTT
                      ____________________________________________________________
consensus             TATCATACGTTTTGCTCAGAAAAGGCGGCGGCGAATTCCCGGCAGCCGCGGCGGCGCTTT
 
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JMSF042D10+           CCTGACCACCGTCCATGTTTCCCGATGGTCCTCCACTTAGGTAGACTCGCCTGACGCTTC
JMSF004N05+           CCTGACCACCGTCCATGTTTCCCGATGGTCCTCCACTTAGGTAGACTCGCCTGACGCTTC
                      ____________________________________________________________
consensus             CCTGACCACCGTCCATGTTTCCCGATGGTCCTCCACTTAGGTAGACTCGCCTGACGCTTC
 
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JMSF042D10+           TGACGATCAACGAAATTGTAGATATTAGATCAGGATAGAGAGAGTGAGAGAGCGATGAAG
JMSF004N05+           TGACGATCAACGAAATTGTAGATATTAGATCAGGATAGAGAGAGTGAGAGAGCGATGAAG
                      ____________________________________________________________
consensus             TGACGATCAACGAAATTGTAGATATTAGATCAGGATAGAGAGAGTGAGAGAGCGATGAAG
 
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JMSF042D10+           ATGAGAGAGAAAGAGGTATGGAGGAAGGGAAAGGAATGGAGC                  
JMSF004N05+           ATGAGAGAGAAAGAGGTATGGAGGAAGGGAAAGGAATGGAGCGACGAGTGACTGGCACCC
                      ____________________________________________________________
consensus             ATGAGAGAGAAAGAGGTATGGAGGAAGGGAAAGGAATGGAGCGACGAGTGACTGGCACCC