| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027I05 | Sequence | 527 | 000581 (4) | ref|XP_009615062.1| | 3e-67 | PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Nicotiana tomentosi | 716 | 011220 (3) | ref|XP_006360043.1| | 1e-120 | PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Solanum tubero |
| JMFF050N12 | Sequence | 597 | 000581 (4) | ref|XP_009615062.1| | 5e-84 | PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Nicotiana tomentosi | 436 | 011220 (3) | ref|XP_010327114.1| | 1e-28 | PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Solanum lycopersicu |
| JMSF004I11 | Sequence | 349 | 000581 (4) | ref|XP_009615062.1| | 1e-13 | PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Nicotiana tomentosi | |||||
| JMSF049K13 | Sequence | 666 | 000581 (4) | ref|XP_009615062.1| | 2e-99 | PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Nicotiana tomentosi | 725 | 011220 (3) | ref|XP_006360043.1| | 6e-127 | PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Solanum tubero |
This contig is upended
. : . : . : . : . : . :
JMSF049K13+ ACTGCAGCTTGCTCCCCGACCTCTTTACGCAAAAT
____________________________________________________________
consensus ACTGCAGCTTGCTCCCCGACCTCTTTACGCAAAAT
. : . : . : . : . : . :
JMFF050N12+ TCCAAATCAATAGAGTGCAAAGTTCTCAA
JMSF049K13+ CTTGAGGGAGTTCCCCACAAACTGTAGCTTTTCCAAATCAATAGAGTGCAAAGTTCTCAA
____________________________________________________________
consensus CTTGAGGGAGTTCCCCACAAACTGTAGCTTTTCCAAATCAATAGAGTGCAAAGTTCTCAA
. : . : . : . : . : . :
JMFF050N12+ TCCCTCCTCAGAACGAATGGGAGACTGAATCACAGGACCACGAACCTCTTCAATGTCAAA
JMSF049K13+ TCCCTCCTCAGAACGAATGGGAGACTGAATCACAGGACCACGAACCTCTTCAATGTCAAA
JMFF027I05+ CCTCTTCAATGTCAAA
____________________________________________________________
consensus TCCCTCCTCAGAACGAATGGGAGACTGAATCACAGGACCACGAACCTCTTCAATGTCAAA
. : . : . : . : . : . :
JMFF050N12+ TTGGACTCCAAATGCAGGAAGTGGGGTTAATATGTCAGAGAAGATGATTACTCCATCAGG
JMSF049K13+ TTGGACTCCAAATGCAGGAAGTGGGGTTAATATGTCAGAGAAGATGATTACTCCATCAGG
JMFF027I05+ TTGGACTCCAAATGCAGGAAGTGGGGTTAATATGTCAGAGAAGATGATTACTCCATCAGG
____________________________________________________________
consensus TTGGACTCCAAATGCAGGAAGTGGGGTTAATATGTCAGAGAAGATGATTACTCCATCAGG
. : . : . : . : . : . :
JMFF050N12+ ATGAAAAGCTTCCCAAGGCTGCAAAGAAATTTCGACAATGAGATCAGTTGTCTCTGACCT
JMSF049K13+ ATGAAAAGCTTCCCAAGGCTGCAAAGAAATTTCGACAATGAGATCAGTTGTCTCTGACCT
JMFF027I05+ ATGAAAAGCTTCCCAAGGCTGCAAAGAAATTTCGACAATGAGATCAGTTGTCTCTGACCT
____________________________________________________________
consensus ATGAAAAGCTTCCCAAGGCTGCAAAGAAATTTCGACAATGAGATCAGTTGTCTCTGACCT
. : . : . : . : . : . :
JMFF050N12+ CTCTCTGAAGGATGGGTGTTTCTCTGCAAGCTTTCTGTAAACAGCCATATACCTTCCTGC
JMSF049K13+ CTCTCTGAAGGATGGGTGTTTCTCTGCAAGCTTTCTGTAAACAGCCATATACCTTCCTGC
JMFF027I05+ CTCTCTGAAGGATGGGTGTTTCTCTGCAAGCTTTCTGTAAACAGCCATATACCTTCCTGC
____________________________________________________________
consensus CTCTCTGAAGGATGGGTGTTTCTCTGCAAGCTTTCTGTAAACAGCCATATACCTTCCTGC
. : . : . : . : . : . :
JMFF050N12+ TTGACGCATCATCCAAGCTGGTGGGCGACTAACACGTTCTCTTCTTGCTGCCCTCACCAA
JMSF049K13+ TTGACGCATCATCCAAGCTGGTGGGCGACTAACACGTTCTCTTCTTGCTGCCCTCACCAA
JMFF027I05+ TTGACGCATCATCCAAGCTGGTGGGCGACTAACACGTTCTCTTCTTGCTGCCCTCACCAA
JMSF004I11+ TCCAAGCTGGTGGGCGACTAACACGTTCTNTTCTTGCTGCCCTCACCAA
____________________________________________________________
consensus TTGACGCATCATCCAAGCTGGTGGGCGACTAACACGTTCTCTTCTTGCTGCCCTCACCAA
. : . : . : . : . : . :
JMFF050N12+ AAGTGGTTCTGAAGAAGAAGAGGAGGAGGAGGCGCACGCCCGTATGAACTTTGCGGGTTT
JMSF049K13+ AAGTGGTTCTGAAGAAGAAGAGGAGGAGGAGGCGCACGCCCGTATGAACTTTGCGGGTTT
JMFF027I05+ AAGTGGTTCTGAAGAAGAAGAGGAGGAGGAGGCGCACGCCCGTATGAACTTTGCGGGTTT
JMSF004I11+ AAGTGGTTCTGAAGAAGAAGAGGAGGAGGAGGCGCACGCCCGTATGAACTTTGCGGGTTT
____________________________________________________________
consensus AAGTGGTTCTGAAGAAGAAGAGGAGGAGGAGGCGCACGCCCGTATGAACTTTGCGGGTTT
. : . : . : . : . : . :
JMFF050N12+ ACGGGAGGTCCGAATTGCGTTCAACCCATTGGGGATAAACCCTAATTGGGAAAGCGAGCT
JMSF049K13+ ACGGGAGGTCCGAATTGCGTTCAACCCATTGGGGATAAACCCTAATTGGGAAAGCGAGCT
JMFF027I05+ ACGGGAGGTCCGAATTGCGTTCAACCCATTGGGGATAAACCCTAATTGGGAAAGCGAGCT
JMSF004I11+ ACGGGAGGTCCGAATTGCGTTCAACCCATTGGGGATAAACCCTAATTGGGAAAGCGAGCT
____________________________________________________________
consensus ACGGGAGGTCCGAATTGCGTTCAACCCATTGGGGATAAACCCTAATTGGGAAAGCGAGCT
. : . : . : . : . : . :
JMFF050N12+ TGAAGATTTCCAGCCCAGAGCGGGTGTCCCATAGCTACTGCTACACCCACTCGTTGCCAT
JMSF049K13+ TGAAGATTTCCAGCCCAGAGCGGGTGTCCCATAGCTACTGCTACACCCACTCGTTGCCAT
JMFF027I05+ TGAAGATTTCCAGCCCAGAGCGGGTGTCCCATAGCTACTGCTACACCCACTCGTTGCCAT
JMSF004I11+ TGAAGATTTCCAGCCCAGAGCGGGTGTCCCATAGCTACTGCTACACCCACTCGTTGCCAT
____________________________________________________________
consensus TGAAGATTTCCAGCCCAGAGCGGGTGTCCCATAGCTACTGCTACACCCACTCGTTGCCAT
. : . : . : . : . : . :
JMFF050N12+ TAACACAGAGAAACCCATCTCAGCTTCTTCTGAACAGGGAAAGGGTCGAGAATCCCCAAC
JMSF049K13+ TAACACAGAGAAACCCATCTCAGCTTCTTCTGAACAGGGAAAGGGTCGAGAATCCCCAAC
JMFF027I05+ TAACACAGAGAAACCCATCTCAGCTTCTTCTGAACAGGGAAAGGGTCGAGAATCCCCAAC
JMSF004I11+ TAACACAGAGAAACCCATCTCAGCTTCTTCTGAACAGGGAAAGGGTCGAGAATCCCCAAC
____________________________________________________________
consensus TAACACAGAGAAACCCATCTCAGCTTCTTCTGAACAGGGAAAGGGTCGAGAATCCCCAAC
. : . : . : . : . : . :
JMFF050N12+ CCCAGCTTCTTATCTTCCCACTTTAATC
JMSF049K13+ CCCAGCTTCTTATCTTCCCACTTCAATC
JMFF027I05+ CCCAGCTTCTTATCTTCCCACTTCAATC
JMSF004I11+ CCCAGCTTCTTATCTTCCCACTTCAATCGCTGTGTTTTGGCCTTTGGCCTTTGGCCTTCC
____________________________________________________________
consensus CCCAGCTTCTTATCTTCCCACTTCAATCGCTGTGTTTTGGCCTTTGGCCTTTGGCCTTCC