Contig 000580:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP009G04Sequence615000580 (5)ref|XP_009780810.1|4e-113PREDICTED: cyclin-C1-2-like [Nicotiana sylvestris]
JMSF004H23Sequence314000580 (5)ref|XP_011089651.1|5e-40PREDICTED: cyclin-C1-2-like [Sesamum indicum]
JMSF011I17Sequence410000580 (5)ref|XP_011089651.1|1e-62PREDICTED: cyclin-C1-2-like [Sesamum indicum]752017092ref|XP_009780810.1|2e-84PREDICTED: cyclin-C1-2-like [Nicotiana sylvestris]
JMSF037M07Sequence655000580 (5)ref|XP_009780810.1|4e-114PREDICTED: cyclin-C1-2-like [Nicotiana sylvestris]756000580 (5)ref|XP_009618524.1|7e-57PREDICTED: cyclin-C1-2-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF037M07-                                                                    AG
                      ____________________________________________________________
consensus                                                                       AG
 
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rJMSF037M07-          AATTTCAATCATCATACAACATCCAGCCTGCTTTGGCTAGACTGCAAAGCCTGAAATGGA
                      ____________________________________________________________
consensus             AATTTCAATCATCATACAACATCCAGCCTGCTTTGGCTAGACTGCAAAGCCTGAAATGGA
 
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rJMSF037M07-          ATCTTTTTTCATGTTGGTGCAGGGACCATCCACTTTTTATCAAAATGTCCTTTTTTTCCC
                      ____________________________________________________________
consensus             ATCTTTTTTCATGTTGGTGCAGGGACCATCCACTTTTTATCAAAATGTCCTTTTTTTCCC
 
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rJMSF037M07-          CTCCAGATTCTCACACATTACAATTATGAACAATACTGTGTATCTAATTTCCAGACAAAT
                      ____________________________________________________________
consensus             CTCCAGATTCTCACACATTACAATTATGAACAATACTGTGTATCTAATTTCCAGACAAAT
 
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rJMSF037M07-          CGTGTACATCTTACTAGATGAATTTACCTACTATATTTCAGCTCATTATCTCGCGGGAGG
                      ____________________________________________________________
consensus             CGTGTACATCTTACTAGATGAATTTACCTACTATATTTCAGCTCATTATCTCGCGGGAGG
 
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rJMSF037M07-          AGAGGGGTCATCTCCCTTCTTGTCCTCGTTTGACTAGCAGGAAGTACGGGTTCAGCATCT
                      ____________________________________________________________
consensus             AGAGGGGTCATCTCCCTTCTTGTCCTCGTTTGACTAGCAGGAAGTACGGGTTCAGCATCT
 
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rJMSF037M07-          TATTCCTCAACCGAATATTGTTCTCTGTCGTGTAACGTGTTCAGCCACTCGACATCACCA
                      ____________________________________________________________
consensus             TATTCCTCAACCGAATATTGTTCTCTGTCGTGTAACGTGTTCAGCCACTCGACATCACCA
 
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rJMSF037M07-          GTGATTTGCTGGTCATGGGGCGTGTTACTTTCCAGCCAGCTTGCTCATTGCAGCATTTAC
                      ____________________________________________________________
consensus             GTGATTTGCTGGTCATGGGGCGTGTTACTTTCCAGCCAGCTTGCTCATTGCAGCATTTAC
 
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rJMSF037M07-          TCTTTCTTCCGTGATCATCTTGTGGCTGTCATAGAAATCTAATATTTCCATTGCTATGTT
                      ____________________________________________________________
consensus             TCTTTCTTCCGTGATCATCTTGTGGCTGTCATAGAAATCTAATATTTCCATTGCTATGTT
 
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rJMSF037M07-          TTTTACCACATTCATGTCAGCCCGAAGCTCCTCAAACCAGGAAGTAGTTTCCTTCTCTTT
JMSF037M07+                                                                     TT
                      ____________________________________________________________
consensus             TTTTACCACATTCATGTCAGCCCGAAGCTCCTCAAACCAGGAAGTAGTTTCCTTCTCTTT
 
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rJMSF037M07-          CAACACACTTGCTATGTATATGCATGCTAATGCTATCAAGTGTGGTGGATGTATTAGAAT
rJMCP009G04+                                              CAAGTGTGGTGGGTGTACAAGAAT
JMSF037M07+           CAACACACTTGCTANGTATATGCATGCTAATGCTATCAAGTGTGGTGGATGTATTAGAAT
                      ____________________________________________________________
consensus             CAACACACTTGCTATGTATATGCATGCTAATGCTATCAAGTGTGGTGGATGTATTAGAAT
 
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rJMSF037M07-          TAGATCCATCTTATATGTATCATTCACAATTCCCCAAGTCAGTTGTGTTGTATCATTCAT
rJMCP009G04+          TAGATCCAaCTTATACGTATCGTTCACAATTCCCCAAGTCAGTTGAATTGCTTCATTCAT
JMSF037M07+           TAGATCCATCTTATATGTATCATTCACAATTCCCCAAGTCAGTTGTGTTGTATCATTCAT
                      ____________________________________________________________
consensus             TAGATCCATCTTATATGTATCATTCACAATTCCCCAAGTCAGTTGTGTTGTATCATTCAT
 
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rJMSF037M07-          GCCAGCATCCTGAAGCAACTGTGATAAAGACCGGTATGGGTGGAATACAACCAAGTAATA
rJMCP009G04+          GCCAGCATCCTGAAGCAACTGTGATAGGCACCGGTATGGATGGAATACAACCAAGTAATA
JMSF037M07+           GCCAGCATCCTGAAGCAACTGTGATAGAGACCGGTATGGGTGGAATACAACCAAGTAATA
                      ____________________________________________________________
consensus             GCCAGCATCCTGAAGCAACTGTGATAGAGACCGGTATGGGTGGAATACAACCAAGTAATA
 
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rJMSF037M07-          GTCCAGGGC-TNCAAAACTTTCATTTCCATTTCTA                         
rJMCP009G04+          ATCCAGGGCTTCCAAAACTTTCATTTCCATTTCTAGGATGTCTTTTATTTCATACCTATA
JMSF037M07+           GTCCAGGGCTTCCAAAACTTTCATTTCCATTTCTAGAATGTCCTTTATTTCATATCTATA
                      ____________________________________________________________
consensus             GTCCAGGGCTTCCAAAACTTTCATTTCCATTTCTAGGATGTCTTTTATTTCATATCTATA
 
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rJMCP009G04+          CTTATCATCTGGATATAATTTCATGATGTAAAAAACAAGTAGTCTAGCCTGCACTGTGCT
JMSF037M07+           CTTATCATCTGAATATAATTTCTTGATATAAAATACAAGGTGTCTAGCCTGCACTGTGCT
JMSF011I17+                       ATATAATTTCCTGATGTAAAAAACAAGTAGTCTAGCCTGCACTGTGCT
                      ____________________________________________________________
consensus             CTTATCATCTGGATATAATTTCTTGATGTAAAAAACAAGTAGTCTAGCCTGCACTGTGCT
 
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rJMCP009G04+          CTCTTCTGCTTTTGATGCCAAGTATAAGCAGGCTGGCGCAACCAGACGAGGATCATATTC
JMSF037M07+           CTCTTCTGCTTTTGATGCCAAGTATAAGCAGGCTGGAGCAACCAGACGAGGATCGTATTC
JMSF011I17+           CTCTTCTGCTTTTGATGCCAAGTATAAGCAGGCTGGCGCAACCAGACGAGGATCATATTC
JMSF004H23+                                                         CGAGGATCATATTC
                      ____________________________________________________________
consensus             CTCTTCTGCTTTTGATGCCAAGTATAAGCAGGCTGGCGCAACCAGACGAGGATCATATTC
 
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rJMCP009G04+          TGTCATACTTTTagaGACATAAACACGTCGCATGTATGAAATGGCAGTAGCTACAACCCT
JMSF037M07+           TGTCATACTTTTTCTCACATAAACACGTCTCATGTAGGAAATGGCAGTAGCTACAACCCT
JMSF011I17+           TGTCATACTTTTTCTGACATAAACACGTCGCATGTATGAAATGGCAGTAGCTACAACCCT
JMSF004H23+           TGTCATACTTTTTCTGACATAAACACGTCGCATGTATGAAATGGCAGTAGCTACAACCCT
                      ____________________________________________________________
consensus             TGTCATACTTTTTCTGACATAAACACGTCGCATGTATGAAATGGCAGTAGCTACAACCCT
 
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rJMCP009G04+          TTGCCTTAATGTGACAGTTTGAGCCAATCTTGCAATGTAATTGGACATATGGAGCTTGAT
JMSF037M07+           TTGCCTTACTTTGACATTTTGAGCCAATCTTGCAATATAGTTGGACATATGGAGTTTGAT
JMSF011I17+           TTGCCTTAATGTGACAGTTTGAGCCAATCTTGCAATGTAATTGGACATATGGAGCTTGAT
JMSF004H23+           TTGCCTTAATGTGACAGTTTGAGCCAATCTTGCAATGTAATTGGACATATGGAGCTTGAT
                      ____________________________________________________________
consensus             TTGCCTTAATGTGACAGTTTGAGCCAATCTTGCAATGTAATTGGACATATGGAGCTTGAT
 
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rJMCP009G04+          GAGCTTGCAATCCTCAAGAGTGATGCCTCTCTCCTTATCAAGTGGATGCACAGCATTCAC
JMSF037M07+           GAGCTTGCAGTCCTCGAGAGTGAGGCCTCTGTCCTTATCAAGCTGCTGCACAACATCCAC
JMSF011I17+           GAGCTTGCAATCCTCAAGAGTGATGCCTCTCTCCTTATCAAGTGGATGCACAGCATTCAC
JMSF004H23+           GAGCTTGCAATCCTCAAGAGTGATGCCTCTCTCCTTATCAAGTGGATGCACAGCATTCAC
                      ____________________________________________________________
consensus             GAGCTTGCAATCCTCAAGAGTGATGCCTCTCTCCTTATCAAGTGGATGCACAGCATTCAC
 
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rJMCP009G04+          CACTTCAGGATCCAGAAGCAGTTTGCAGTGAGATGAGGTCCAGAAATTGGCAGCCAT   
JMSF037M07+           ATATTCAGGATCCAGAAGCTGCTTGCAGTGAGATGAGGTCCAGAAATTGGCAGCCAT   
JMSF011I17+           CACTTCAGGATCCAGAAGCAGTTTGCAGTGAGATGAGGTCCAGAAATTGGCAGCCAT   
JMSF004H23+           CACTTCAGGATCCAGAAGCAGTTTGCAGTGAGATGAGGTCCAGAAATTGGCAGCCATTGT
                      ____________________________________________________________
consensus             CACTTCAGGATCCAGAAGCAGTTTGCAGTGAGATGAGGTCCAGAAATTGGCAGCCATTGT
 
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JMSF004H23+           TGTGTTGATTAAACTTCGGAAGAAAGAAATAACAGAGCTTGGTGAGTTACGGTAATGGCC
                      ____________________________________________________________
consensus             TGTGTTGATTAAACTTCGGAAGAAAGAAATAACAGAGCTTGGTGAGTTACGGTAATGGCC