Contig 000575:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017J16Sequence639000575 (7)ref|XP_009762245.1|1e-102PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c753001124 (6)ref|XP_009759585.1|4e-72PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMFF027A10Sequence617000575 (7)ref|XP_009762245.1|2e-103PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c734001124 (6)ref|XP_009759585.1|4e-86PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMFF039D21Sequence484000575 (7)ref|XP_009762245.1|4e-74PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c632001124 (6)ref|XP_009759585.1|1e-72PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMSF004F08Sequence211000575 (7)ref|XP_009762245.1|3e-07PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMSF025N24Sequence667000575 (7)ref|XP_010320594.1|2e-110PREDICTED: dehydroquinate dehydratase/shikimate:NADP oxidoreductase isoform X2 730001124 (6)ref|XP_009759585.1|3e-72PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMSF043P04Sequence712000575 (7)ref|XP_010320594.1|8e-124PREDICTED: dehydroquinate dehydratase/shikimate:NADP oxidoreductase isoform X2 483001124 (6)ref|XP_009759585.1|2e-66PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMSF048N15Sequence719000575 (7)ref|XP_010320594.1|3e-122PREDICTED: dehydroquinate dehydratase/shikimate:NADP oxidoreductase isoform X2 508001124 (6)ref|XP_011071496.1|5e-71PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF043P04+ TTTCCAGCTTCCAGAGTACCGAATGTGAGATAGCCACCAAACTTTGGG
JMSF048N15+ TCCAGAGTACCGAATGTGAGATAGCCACCAAACTTTGGG
                      ____________________________________________________________
consensus TTTCCAGCTTCCAGAGTACCGAATGTGAGATAGCCACCAAACTTTGGG
 
. : . : . : . : . : . :
JMSF043P04+ CAAAGTATGCGAGACATCAAACCCTTCTCTCCCATGACCATGGCTATTATTGGCACTTGA
JMSF025N24+ GTATGCGAGACATCAAACCCTTCTCTCCCATGACCATGGCTATTATTGGCACTTGA
JMFF027A10+ TTGA
JMSF048N15+ CAAAGTATGCGAGACATCAAACCCTTCTCTCCCATGACCATGGCTATTATTGGCACTTGA
JMFF017J16+ TGA
                      ____________________________________________________________
consensus CAAAGTATGCGAGACATCAAACCCTTCTCTCCCATGACCATGGCTATTATTGGCACTTGA
 
. : . : . : . : . : . :
JMSF043P04+ GAGTGAACAGTAATTTGGAAGATGCGTGCTACATCAATGATATCCAATGCAGTGGTTGCA
JMSF025N24+ GAGTGAACAGTAATTTGGAAGATGCGTGCTACATCAATGATATCCAATGCAGTGGTTGCA
JMFF027A10+ GAGTGAACAGTAATTTGGAAGATGCGTGCTACATCAATGATATCCAATGCAGTGGTTGCA
JMSF048N15+ GAGTGAACAGTAATTTGGAAGATGCGTGCTACATCAATGATATCCAATGCAGTGGTTGCA
JMFF017J16+ GAGTGAACAGTAATTTGGAAGATGCGTGCTACATCAATGATATCCAATGCAGTGGTTGCA
                      ____________________________________________________________
consensus GAGTGAACAGTAATTTGGAAGATGCGTGCTACATCAATGATATCCAATGCAGTGGTTGCA
 
. : . : . : . : . : . :
JMSF043P04+ ATTTTCACTATGTCAGCTCCTGATGCTTGTATCCTTGCTACAAGATCCCCAAGCTCCTCA
JMSF025N24+ ATTTTCACTATGTCAGCTCCTGATGCTTGTATCCTTGCTACAAGATCCCCAAGCTCCTCA
JMFF027A10+ ATTTTCACTATGTCAGCTCCTGATGCTTGTATCCTTGCTACAAGATCCCCAAGCTCCTCA
JMSF048N15+ ATTTTCACTATGTCAGCTCCTGATGCTTGTATCCTTGCTACAAGATCCCCAAGCTCCTCA
JMFF017J16+ ATTTTCACTATGTCAGCTCCTGATGCTTGTATCCTTGCTACAAGATCCCCAAGCTCCTCA
                      ____________________________________________________________
consensus ATTTTCACTATGTCAGCTCCTGATGCTTGTATCCTTGCTACAAGATCCCCAAGCTCCTCA
 
. : . : . : . : . : . :
JMSF043P04+ ACTGATGGTGTGTTATGATAATTGTGAGATGAAACTATGACTTGGCATTTTCCAGGCCTA
JMSF025N24+ ACTGATGGTGTGTTATGATAATTGTGAGATGAAACTATGACTTGGCATTTTCCAGGCCTA
JMFF027A10+ ACTGATGGTGTGTTATGATAATTGTGAGATGAAACTATGACTTGGCATTTTCCAGGCCTA
JMFF039D21+ TGTGTTATGATAATTGTGAGATGAAACTATGACTTGGCATTTTCCAGGCCTA
JMSF048N15+ ACTGATGGTGTGTTATGATAATTGTGAGATGAAACTATGACTTGGCATTTTCCAGGCCTA
JMFF017J16+ ACTGATGGTGTGTTATGATAATTGTGAGATGAAACTATGACTTGGCATTTTCCAGGCCTA
                      ____________________________________________________________
consensus ACTGATGGTGTGTTATGATAATTGTGAGATGAAACTATGACTTGGCATTTTCCAGGCCTA
 
. : . : . : . : . : . :
JMSF043P04+ ATTCCATTTAGAGAACTGTTAAATTCGTGAATAGCCTTGAGTTCTACATCTATATGATCA
JMSF025N24+ ATTCCATTTAGAGAACTGTTAAATTCGTGAATAGCCTTGAGTTCTACATCTATATGATCA
JMFF027A10+ ATTCCATTTAGAGAACTGTTAAATTCGTGAATAGCCTTGAGTTCTACATCTATATGATCA
JMFF039D21+ ATTCCATTTAGAGAACTGTTAAATTCGTGAATAGCCTTGAGTTCTACATCTATATGATCA
JMSF048N15+ ATTCCATTTAGAGAACTGTTAAATTCGTGAATAGCCTTGAGTTCTACATCTATATGATCA
JMFF017J16+ ATTCCATTTAGAGAACTGTTAAATTCGTGAATAGCCTTGAGTTCTACATCTATATGATCA
                      ____________________________________________________________
consensus ATTCCATTTAGAGAACTGTTAAATTCGTGAATAGCCTTGAGTTCTACATCTATATGATCA
 
. : . : . : . : . : . :
JMSF043P04+ GCTCCCAGCTCCATTGCTAAGTGAAGTGCAGCCAATCGGCTAGTTTCATCACCGTCATAC
JMSF025N24+ GCTCCCAGCTCCATTGCTAAGTGAAGTGCAGCCAATCGGCTAGTTTCATCACCGTCATAC
JMFF027A10+ GCTCCCAGCTCCATTGCTAAGTGAAGTGCAGCCAATCGGCTAGTTTCATCACCGTCATAC
JMFF039D21+ GCTCCCAGCTCCATTGCTAAGTGAAGTGCAGCCAATCGGCTAGTTTCATCACCGTCATAC
JMSF048N15+ GCTCCCAGCTCCATTGCTAAGTGAAGTGCAGCCAATCGGCTAGTTTCATCACCGTCATAC
JMFF017J16+ GCTCCCAGCTCCATTGCTAAGTGAAGTGCAGCCAATCGGCTAGTTTCATCNCCGTCATAC
                      ____________________________________________________________
consensus GCTCCCAGCTCCATTGCTAAGTGAAGTGCAGCCAATCGGCTAGTTTCATCACCGTCATAC
 
. : . : . : . : . : . :
JMSF043P04+ ATACCACCTTCCCATACCGGCCTGTAAGTGAAAAGAGTAGGCAACGGGCAGTGCTGAATT
JMSF025N24+ ATACCACCTTCCCATACCGGCCTGTAAGTGAAAAGAGTAGGCAACGGGCAGTGCTGAATT
JMFF027A10+ ATACCACCTTCCCATACCGGCCTGTAAGTGAAAAGAGTAGGCAACGGGCAGTGCTGAATT
JMFF039D21+ ATACCACCTTCCCATACCGGCCTGTAAGTGAAAAGAGTAGGCAACGGGCAGTGCTGAATT
JMSF048N15+ ATACCACCTTCCCATACCGGCCTGTAAGTGAAAAGAGTAGGCAACGGGCAGTGCTGAATT
JMFF017J16+ ATACCACCTTCCCATACCGGCCTGTAAGTGAAAAGAGTAGGCAACGGGCAGTGCTGAATT
                      ____________________________________________________________
consensus ATACCACCTTCCCATACCGGCCTGTAAGTGAAAAGAGTAGGCAACGGGCAGTGCTGAATT
 
. : . : . : . : . : . :
JMSF043P04+ AACGTCGAGATATCGGGACGATGATTGAAGCTCTTCAAGCTATCCAATCGAATTTCCACG
JMSF025N24+ AACGTCGAGATATCGGGACGATGATTGAAGCTCTTCAAGCTATCCAATCGAATTTCCACG
JMFF027A10+ AACGTCGAGATATCGGGACGATGATTGAAGCTCTTCAAGCTATCCAATCGAATTTCCACG
JMFF039D21+ AACGTCGAGATATCGGGACGATGATTGAAGCTCTTCAAGCTATCCAATCGAATTTCCACG
JMSF048N15+ AACGTCGAGATATCGGGACGATGATTGAAGCTCTTCAAGCTATCCAATCGAATTTCCACG
JMFF017J16+ AACGTCGAGATATCGGGACGATGATTGAAGCTCTTCAAGCTATCCAATCGAATTTCCACG
                      ____________________________________________________________
consensus AACGTCGAGATATCGGGACGATGATTGAAGCTCTTCAAGCTATCCAATCGAATTTCCACG
 
. : . : . : . : . : . :
JMSF043P04+ AGATCAGCTCCGCTCGCCTTCGCCTTCGGCATTAGATTCAGCATCTGATCCACGGTGTCC
JMSF025N24+ AGATCAGCTCCGCTCGCCTTCGCCTTCGGCATTAGATTCAGCATCTGATCCACGGTGTCC
JMFF027A10+ AGATCAGCTCCGCTCGCCTTCGCCTTCGGCATTAGATTCAGCATCTGATCCACGGTGTCC
JMFF039D21+ AGATCAGCTCCGCTCGCCTTCGCCTTCGGCATTAGATTCAGCATCTGATCCACGGTGTCC
JMSF048N15+ AGATCAGCTCCGCTCGCCTTCGCCTTCGGCATTAGATTCAGCATCTGATCCACGGTGTCC
JMFF017J16+ AGATCAGCTCCGCTCGCCTTCGCCTTCGGCATTAGATTCAGCATCTGATCCACGGTGTCC
JMSF004F08+ TAGATTCAGCATNTGATCCACGGTGTCC
                      ____________________________________________________________
consensus AGATCAGCTCCGCTCGCCTTCGCCTTCGGCATTAGATTCAGCATCTGATCCACGGTGTCC
 
. : . : . : . : . : . :
JMSF043P04+ GCCATTATCGGCGCACAAATGAGAGTCGGGTTCTTCCTCGCCCCCTCCATCCTCCTAACA
JMSF025N24+ GCCATTATCGGCGCACAAATGAGAGTCGGGTTCTTCCTCGCCCCCTCCATCCTCCTAACA
JMFF027A10+ GCCATTATCGGCGCACAAATGAGAGTCGGGTTCTTCCTCGCCCCCTCCATCCTCCTAACA
JMFF039D21+ GCCATTATCGGCGCACAAATGAGAGTCGGGTTCTTCCTCGCCCCCTCCATCCTCCTAACA
JMSF048N15+ GCCATTATCGGCGCACAAATGAGAGTCGGGTTCTTCCTCGCCCCCTCCATCCTCCTAACA
JMFF017J16+ GCCATTATCGGCGCACAAATGAGAGTCGGGTTCTTCCTCGCCCCCTCCATCCTCCTAACA
JMSF004F08+ GCCANTATCGGCGCACAAATGAGAGTNGGGTTTTTNCTCGCCCCCTCCATCNTCNTAACA
                      ____________________________________________________________
consensus GCCATTATCGGCGCACAAATGAGAGTCGGGTTCTTCCTCGCCCCCTCCATCCTCCTAACA
 
. : . : . : . : . : . :
JMSF043P04+ CCGGAATCCACAACCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGA
JMSF025N24+ CCGGAATCCACAACCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGAT
JMFF027A10+ CCGGAATCCACAACCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGAT
JMFF039D21+ CCGGAATCCACAACCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGAT
JMSF048N15+ CCGGAATCCACAACCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGAT
JMFF017J16+ CCGGAATCCACAACCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGAT
JMSF004F08+ CCGGAATCCACANCCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGAN
                      ____________________________________________________________
consensus CCGGAATCCACAACCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGAT
 
. : . : . : . : . : . :
JMSF025N24+ GACGCCTTC
JMFF027A10+ GACGCCTTCTAC
JMFF039D21+ GACGCCTTCTAC
JMSF048N15+ GACGCCTTCTACT
JMFF017J16+ GACGCCTTCTACTAGTCCCGAGCAAAATGCAT
JMSF004F08+ GACGCCTTNTANTAGTCCCGAGCAAAATGCATATATATATATATATATATATATAGTATC
                      ____________________________________________________________
consensus GACGCCTTCTACTAGTCCCGAGCAAAATGCATATATATATATATATATATATATAGTATC