| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017J16 | Sequence | 639 | 000575 (7) | ref|XP_009762245.1| | 1e-102 | PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c | 753 | 001124 (6) | ref|XP_009759585.1| | 4e-72 | PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c |
| JMFF027A10 | Sequence | 617 | 000575 (7) | ref|XP_009762245.1| | 2e-103 | PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c | 734 | 001124 (6) | ref|XP_009759585.1| | 4e-86 | PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c |
| JMFF039D21 | Sequence | 484 | 000575 (7) | ref|XP_009762245.1| | 4e-74 | PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c | 632 | 001124 (6) | ref|XP_009759585.1| | 1e-72 | PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c |
| JMSF004F08 | Sequence | 211 | 000575 (7) | ref|XP_009762245.1| | 3e-07 | PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c | |||||
| JMSF025N24 | Sequence | 667 | 000575 (7) | ref|XP_010320594.1| | 2e-110 | PREDICTED: dehydroquinate dehydratase/shikimate:NADP oxidoreductase isoform X2 | 730 | 001124 (6) | ref|XP_009759585.1| | 3e-72 | PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c |
| JMSF043P04 | Sequence | 712 | 000575 (7) | ref|XP_010320594.1| | 8e-124 | PREDICTED: dehydroquinate dehydratase/shikimate:NADP oxidoreductase isoform X2 | 483 | 001124 (6) | ref|XP_009759585.1| | 2e-66 | PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c |
| JMSF048N15 | Sequence | 719 | 000575 (7) | ref|XP_010320594.1| | 3e-122 | PREDICTED: dehydroquinate dehydratase/shikimate:NADP oxidoreductase isoform X2 | 508 | 001124 (6) | ref|XP_011071496.1| | 5e-71 | PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c |
This contig is upended
. : . : . : . : . : . :
JMSF043P04+ TTTCCAGCTTCCAGAGTACCGAATGTGAGATAGCCACCAAACTTTGGG
JMSF048N15+ TCCAGAGTACCGAATGTGAGATAGCCACCAAACTTTGGG
____________________________________________________________
consensus TTTCCAGCTTCCAGAGTACCGAATGTGAGATAGCCACCAAACTTTGGG
. : . : . : . : . : . :
JMSF043P04+ CAAAGTATGCGAGACATCAAACCCTTCTCTCCCATGACCATGGCTATTATTGGCACTTGA
JMSF025N24+ GTATGCGAGACATCAAACCCTTCTCTCCCATGACCATGGCTATTATTGGCACTTGA
JMFF027A10+ TTGA
JMSF048N15+ CAAAGTATGCGAGACATCAAACCCTTCTCTCCCATGACCATGGCTATTATTGGCACTTGA
JMFF017J16+ TGA
____________________________________________________________
consensus CAAAGTATGCGAGACATCAAACCCTTCTCTCCCATGACCATGGCTATTATTGGCACTTGA
. : . : . : . : . : . :
JMSF043P04+ GAGTGAACAGTAATTTGGAAGATGCGTGCTACATCAATGATATCCAATGCAGTGGTTGCA
JMSF025N24+ GAGTGAACAGTAATTTGGAAGATGCGTGCTACATCAATGATATCCAATGCAGTGGTTGCA
JMFF027A10+ GAGTGAACAGTAATTTGGAAGATGCGTGCTACATCAATGATATCCAATGCAGTGGTTGCA
JMSF048N15+ GAGTGAACAGTAATTTGGAAGATGCGTGCTACATCAATGATATCCAATGCAGTGGTTGCA
JMFF017J16+ GAGTGAACAGTAATTTGGAAGATGCGTGCTACATCAATGATATCCAATGCAGTGGTTGCA
____________________________________________________________
consensus GAGTGAACAGTAATTTGGAAGATGCGTGCTACATCAATGATATCCAATGCAGTGGTTGCA
. : . : . : . : . : . :
JMSF043P04+ ATTTTCACTATGTCAGCTCCTGATGCTTGTATCCTTGCTACAAGATCCCCAAGCTCCTCA
JMSF025N24+ ATTTTCACTATGTCAGCTCCTGATGCTTGTATCCTTGCTACAAGATCCCCAAGCTCCTCA
JMFF027A10+ ATTTTCACTATGTCAGCTCCTGATGCTTGTATCCTTGCTACAAGATCCCCAAGCTCCTCA
JMSF048N15+ ATTTTCACTATGTCAGCTCCTGATGCTTGTATCCTTGCTACAAGATCCCCAAGCTCCTCA
JMFF017J16+ ATTTTCACTATGTCAGCTCCTGATGCTTGTATCCTTGCTACAAGATCCCCAAGCTCCTCA
____________________________________________________________
consensus ATTTTCACTATGTCAGCTCCTGATGCTTGTATCCTTGCTACAAGATCCCCAAGCTCCTCA
. : . : . : . : . : . :
JMSF043P04+ ACTGATGGTGTGTTATGATAATTGTGAGATGAAACTATGACTTGGCATTTTCCAGGCCTA
JMSF025N24+ ACTGATGGTGTGTTATGATAATTGTGAGATGAAACTATGACTTGGCATTTTCCAGGCCTA
JMFF027A10+ ACTGATGGTGTGTTATGATAATTGTGAGATGAAACTATGACTTGGCATTTTCCAGGCCTA
JMFF039D21+ TGTGTTATGATAATTGTGAGATGAAACTATGACTTGGCATTTTCCAGGCCTA
JMSF048N15+ ACTGATGGTGTGTTATGATAATTGTGAGATGAAACTATGACTTGGCATTTTCCAGGCCTA
JMFF017J16+ ACTGATGGTGTGTTATGATAATTGTGAGATGAAACTATGACTTGGCATTTTCCAGGCCTA
____________________________________________________________
consensus ACTGATGGTGTGTTATGATAATTGTGAGATGAAACTATGACTTGGCATTTTCCAGGCCTA
. : . : . : . : . : . :
JMSF043P04+ ATTCCATTTAGAGAACTGTTAAATTCGTGAATAGCCTTGAGTTCTACATCTATATGATCA
JMSF025N24+ ATTCCATTTAGAGAACTGTTAAATTCGTGAATAGCCTTGAGTTCTACATCTATATGATCA
JMFF027A10+ ATTCCATTTAGAGAACTGTTAAATTCGTGAATAGCCTTGAGTTCTACATCTATATGATCA
JMFF039D21+ ATTCCATTTAGAGAACTGTTAAATTCGTGAATAGCCTTGAGTTCTACATCTATATGATCA
JMSF048N15+ ATTCCATTTAGAGAACTGTTAAATTCGTGAATAGCCTTGAGTTCTACATCTATATGATCA
JMFF017J16+ ATTCCATTTAGAGAACTGTTAAATTCGTGAATAGCCTTGAGTTCTACATCTATATGATCA
____________________________________________________________
consensus ATTCCATTTAGAGAACTGTTAAATTCGTGAATAGCCTTGAGTTCTACATCTATATGATCA
. : . : . : . : . : . :
JMSF043P04+ GCTCCCAGCTCCATTGCTAAGTGAAGTGCAGCCAATCGGCTAGTTTCATCACCGTCATAC
JMSF025N24+ GCTCCCAGCTCCATTGCTAAGTGAAGTGCAGCCAATCGGCTAGTTTCATCACCGTCATAC
JMFF027A10+ GCTCCCAGCTCCATTGCTAAGTGAAGTGCAGCCAATCGGCTAGTTTCATCACCGTCATAC
JMFF039D21+ GCTCCCAGCTCCATTGCTAAGTGAAGTGCAGCCAATCGGCTAGTTTCATCACCGTCATAC
JMSF048N15+ GCTCCCAGCTCCATTGCTAAGTGAAGTGCAGCCAATCGGCTAGTTTCATCACCGTCATAC
JMFF017J16+ GCTCCCAGCTCCATTGCTAAGTGAAGTGCAGCCAATCGGCTAGTTTCATCNCCGTCATAC
____________________________________________________________
consensus GCTCCCAGCTCCATTGCTAAGTGAAGTGCAGCCAATCGGCTAGTTTCATCACCGTCATAC
. : . : . : . : . : . :
JMSF043P04+ ATACCACCTTCCCATACCGGCCTGTAAGTGAAAAGAGTAGGCAACGGGCAGTGCTGAATT
JMSF025N24+ ATACCACCTTCCCATACCGGCCTGTAAGTGAAAAGAGTAGGCAACGGGCAGTGCTGAATT
JMFF027A10+ ATACCACCTTCCCATACCGGCCTGTAAGTGAAAAGAGTAGGCAACGGGCAGTGCTGAATT
JMFF039D21+ ATACCACCTTCCCATACCGGCCTGTAAGTGAAAAGAGTAGGCAACGGGCAGTGCTGAATT
JMSF048N15+ ATACCACCTTCCCATACCGGCCTGTAAGTGAAAAGAGTAGGCAACGGGCAGTGCTGAATT
JMFF017J16+ ATACCACCTTCCCATACCGGCCTGTAAGTGAAAAGAGTAGGCAACGGGCAGTGCTGAATT
____________________________________________________________
consensus ATACCACCTTCCCATACCGGCCTGTAAGTGAAAAGAGTAGGCAACGGGCAGTGCTGAATT
. : . : . : . : . : . :
JMSF043P04+ AACGTCGAGATATCGGGACGATGATTGAAGCTCTTCAAGCTATCCAATCGAATTTCCACG
JMSF025N24+ AACGTCGAGATATCGGGACGATGATTGAAGCTCTTCAAGCTATCCAATCGAATTTCCACG
JMFF027A10+ AACGTCGAGATATCGGGACGATGATTGAAGCTCTTCAAGCTATCCAATCGAATTTCCACG
JMFF039D21+ AACGTCGAGATATCGGGACGATGATTGAAGCTCTTCAAGCTATCCAATCGAATTTCCACG
JMSF048N15+ AACGTCGAGATATCGGGACGATGATTGAAGCTCTTCAAGCTATCCAATCGAATTTCCACG
JMFF017J16+ AACGTCGAGATATCGGGACGATGATTGAAGCTCTTCAAGCTATCCAATCGAATTTCCACG
____________________________________________________________
consensus AACGTCGAGATATCGGGACGATGATTGAAGCTCTTCAAGCTATCCAATCGAATTTCCACG
. : . : . : . : . : . :
JMSF043P04+ AGATCAGCTCCGCTCGCCTTCGCCTTCGGCATTAGATTCAGCATCTGATCCACGGTGTCC
JMSF025N24+ AGATCAGCTCCGCTCGCCTTCGCCTTCGGCATTAGATTCAGCATCTGATCCACGGTGTCC
JMFF027A10+ AGATCAGCTCCGCTCGCCTTCGCCTTCGGCATTAGATTCAGCATCTGATCCACGGTGTCC
JMFF039D21+ AGATCAGCTCCGCTCGCCTTCGCCTTCGGCATTAGATTCAGCATCTGATCCACGGTGTCC
JMSF048N15+ AGATCAGCTCCGCTCGCCTTCGCCTTCGGCATTAGATTCAGCATCTGATCCACGGTGTCC
JMFF017J16+ AGATCAGCTCCGCTCGCCTTCGCCTTCGGCATTAGATTCAGCATCTGATCCACGGTGTCC
JMSF004F08+ TAGATTCAGCATNTGATCCACGGTGTCC
____________________________________________________________
consensus AGATCAGCTCCGCTCGCCTTCGCCTTCGGCATTAGATTCAGCATCTGATCCACGGTGTCC
. : . : . : . : . : . :
JMSF043P04+ GCCATTATCGGCGCACAAATGAGAGTCGGGTTCTTCCTCGCCCCCTCCATCCTCCTAACA
JMSF025N24+ GCCATTATCGGCGCACAAATGAGAGTCGGGTTCTTCCTCGCCCCCTCCATCCTCCTAACA
JMFF027A10+ GCCATTATCGGCGCACAAATGAGAGTCGGGTTCTTCCTCGCCCCCTCCATCCTCCTAACA
JMFF039D21+ GCCATTATCGGCGCACAAATGAGAGTCGGGTTCTTCCTCGCCCCCTCCATCCTCCTAACA
JMSF048N15+ GCCATTATCGGCGCACAAATGAGAGTCGGGTTCTTCCTCGCCCCCTCCATCCTCCTAACA
JMFF017J16+ GCCATTATCGGCGCACAAATGAGAGTCGGGTTCTTCCTCGCCCCCTCCATCCTCCTAACA
JMSF004F08+ GCCANTATCGGCGCACAAATGAGAGTNGGGTTTTTNCTCGCCCCCTCCATCNTCNTAACA
____________________________________________________________
consensus GCCATTATCGGCGCACAAATGAGAGTCGGGTTCTTCCTCGCCCCCTCCATCCTCCTAACA
. : . : . : . : . : . :
JMSF043P04+ CCGGAATCCACAACCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGA
JMSF025N24+ CCGGAATCCACAACCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGAT
JMFF027A10+ CCGGAATCCACAACCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGAT
JMFF039D21+ CCGGAATCCACAACCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGAT
JMSF048N15+ CCGGAATCCACAACCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGAT
JMFF017J16+ CCGGAATCCACAACCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGAT
JMSF004F08+ CCGGAATCCACANCCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGAN
____________________________________________________________
consensus CCGGAATCCACAACCAACTCCATTTTTACGCGGAGTCAGAGAGAGAGAGAGTGCAGAGAT
. : . : . : . : . : . :
JMSF025N24+ GACGCCTTC
JMFF027A10+ GACGCCTTCTAC
JMFF039D21+ GACGCCTTCTAC
JMSF048N15+ GACGCCTTCTACT
JMFF017J16+ GACGCCTTCTACTAGTCCCGAGCAAAATGCAT
JMSF004F08+ GACGCCTTNTANTAGTCCCGAGCAAAATGCATATATATATATATATATATATATAGTATC
____________________________________________________________
consensus GACGCCTTCTACTAGTCCCGAGCAAAATGCATATATATATATATATATATATATAGTATC