Contig 000570:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041F05Sequence659000570 (2)ref|XP_009790729.1|272PREDICTED: uncharacterized protein LOC104238140 [Nicotiana sylvestris]593001180 (2)emb|CBI37438.3|1e-24unnamed protein product [Vitis vinifera]
JMSF003N05Sequence371000570 (2)ref|XP_009611710.1|5e-10PREDICTED: uncharacterized protein LOC104105161 isoform X2 [Nicotiana tomentosi744001180 (2)emb|CBI37438.3|8e-18unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF041F05+                                                             TTTATATTCA
                      ____________________________________________________________
consensus                                                               TTTATATTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF041F05+           TCAACTAAAACAGTAGTAGGCATTGGTGGGAAGGCTGCTAGCTNTTCGTCACAGGCATTG
                      ____________________________________________________________
consensus             TCAACTAAAACAGTAGTAGGCATTGGTGGGAAGGCTGCTAGCTNTTCGTCACAGGCATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF041F05+           TCAACCCATGGGCAAAGCAGCTTGTGTCCGCTGTCAAGTTTCAAGCTGAATACTAAGGCT
                      ____________________________________________________________
consensus             TCAACCCATGGGCAAAGCAGCTTGTGTCCGCTGTCAAGTTTCAAGCTGAATACTAAGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF041F05+           GCTTTATCAACTTGTTGTTGGCTCCAAGATGGTGGACAAGTAAAGATAAGGCGCACTCCA
                      ____________________________________________________________
consensus             GCTTTATCAACTTGTTGTTGGCTCCAAGATGGTGGACAAGTAAAGATAAGGCGCACTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF041F05+           CATGCTTCACATGCAATAGTATCCATATCTACGTTTATCCAACCCCTTCTAGCACAGTTT
                      ____________________________________________________________
consensus             CATGCTTCACATGCAATAGTATCCATATCTACGTTTATCCAACCCCTTCTAGCACAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF041F05+           ACTGCACTTACCACCTGCGGTTTAGCAAACCACCACATAGATTTGAAAGTGGCCAGCCTT
                      ____________________________________________________________
consensus             ACTGCACTTACCACCTGCGGTTTAGCAAACCACCACATAGATTTGAAAGTGGCCAGCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF041F05+           CTAAAATAATCACCTCTGTCCCATGGTCTACAAGGAGAAGCTTGAGTTTCTCCACTCGAA
JMSF003N05+                                                            CTCCACTCGAA
                      ____________________________________________________________
consensus             CTAAAATAATCACCTCTGTCCCATGGTCTACAAGGAGAAGCTTGAGTTTCTCCACTCGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF041F05+           TCCGACAAATTCCGTAATCTCTCACCCGCCTTGAATGTCGATTTCGGATCGGATACTACT
JMSF003N05+           TCCGACAAATTCCGTAATCTCTCACCCGCCTTGAATGTCGATTTCGGATCGGATACTACT
                      ____________________________________________________________
consensus             TCCGACAAATTCCGTAATCTCTCACCCGCCTTGAATGTCGATTTCGGATCGGATACTACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF041F05+           AATGCATAGGAAGAATTTGCTCGTTTCTTGCCTCTTGATAACTGAACTTCCGATGAACTG
JMSF003N05+           AATGCATAGGAAGAATTTGCTCGTTTCTTGCCTCTTGATAACTGAACTTCCGATGAACTG
                      ____________________________________________________________
consensus             AATGCATAGGAAGAATTTGCTCGTTTCTTGCCTCTTGATAACTGAACTTCCGATGAACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF041F05+           ATGGCGGGGAGTTTGGATTTGGGAGGAGTCTGAAAAAGTTTGTCCATCACCGCATGAAAC
JMSF003N05+           ATGGCGGGGAGTTTGGATTTGGGAGGAGTCTGAAAAAGTTTGTCCATCACCGCATGAAAC
                      ____________________________________________________________
consensus             ATGGCGGGGAGTTTGGATTTGGGAGGAGTCTGAAAAAGTTTGTCCATCACCGCATGAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF041F05+           CTCTTCTCTGATTCTTCGGCCATCTTCTACTGCTACTCTCCCTAATCTTCTTGTTGTATG
JMSF003N05+           CTCTTCTCTGATTCTTCGGCCATCTTCTACTGCTACTCTCCCTAATCTTCTTGTTGTATG
                      ____________________________________________________________
consensus             CTCTTCTCTGATTCTTCGGCCATCTTCTACTGCTACTCTCCCTAATCTTCTTGTTGTATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF041F05+           TATAGTAGGGTGCAGTTCAAACTTGTAAGACTATATGTCTATATGCAGC           
JMSF003N05+           TATAGTAGGGTGCAGTTCAAACTTGTAAGACTATATGTCTATATGCAGCGCCATAGAAAT
                      ____________________________________________________________
consensus             TATAGTAGGGTGCAGTTCAAACTTGTAAGACTATATGTCTATATGCAGCGCCATAGAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF003N05+           GTGACACGAAGGGTTGGATATTTCAGGGGGGACTGCCGATACTCGAGATTGCCCAACGTC
                      ____________________________________________________________
consensus             GTGACACGAAGGGTTGGATATTTCAGGGGGGACTGCCGATACTCGAGATTGCCCAACGTC