Contig 000569:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003M21Sequence307000569 (2)622007023 (2)ref|XP_009767636.1|1e-22PREDICTED: GATA transcription factor 15-like isoform X2 [Nicotiana sylvestris]
JMSF036H04Sequence668000569 (2)ref|XP_009590423.1|2e-12PREDICTED: GATA transcription factor 15-like isoform X2 [Nicotiana tomentosifor615007023 (2)ref|XP_009767635.1|9e-23PREDICTED: GATA transcription factor 15-like isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF036H04+                                                               GGGGCCGG
                      ____________________________________________________________
consensus                                                                 GGGGCCGG
 
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JMSF036H04+           CTGGGCCACCTCTCCATAGAGGGGTCTTGGTGGTTCCACAATCAGCGCACGTCTTGATCT
                      ____________________________________________________________
consensus             CTGGGCCACCTCTCCATAGAGGGGTCTTGGTGGTTCCACAATCAGCGCACGTCTTGATCT
 
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JMSF036H04+           GCCCACTTGTCTCTGAAGATACCCTGTCAGGGGTTTGTGCTTGGTTATTCATCTCTTCAG
                      ____________________________________________________________
consensus             GCCCACTTGTCTCTGAAGATACCCTGTCAGGGGTTTGTGCTTGGTTATTCATCTCTTCAG
 
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JMSF036H04+           ATTCTGATCCCTGAAATCACCCCAAAAATGGACTCAAAAATCGAATCGGGAACATAAAAT
                      ____________________________________________________________
consensus             ATTCTGATCCCTGAAATCACCCCAAAAATGGACTCAAAAATCGAATCGGGAACATAAAAT
 
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JMSF036H04+           CAAGCAATGATTACAATCACCCAAAATCAACACCAAATAGCGAGTGGATAAACTAGATAA
                      ____________________________________________________________
consensus             CAAGCAATGATTACAATCACCCAAAATCAACACCAAATAGCGAGTGGATAAACTAGATAA
 
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JMSF036H04+           AGGTAAGAGTTACTTACTCGATCACTAAGATCCGCCATTAGATCAGGTGATTAGATGATT
                      ____________________________________________________________
consensus             AGGTAAGAGTTACTTACTCGATCACTAAGATCCGCCATTAGATCAGGTGATTAGATGATT
 
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JMSF036H04+           GGAAGCAAACCCAGACGAAATTTAGTCTTCCAAGCCAAATCACGAACTCGGCTCCTCCAA
JMSF003M21+                                                                  TCCAA
                      ____________________________________________________________
consensus             GGAAGCAAACCCAGACGAAATTTAGTCTTCCAAGCCAAATCACGAACTCGGCTCCTCCAA
 
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JMSF036H04+           GAAACAACCCGATCACACCCAAACTACCAAAAATCACACTAGGTAACCTGGAGAAAGCAA
JMSF003M21+           GAAACAACCCGATCACACCCAAACTACCAAAAATCACACTAGGTAACCTGGAGAAAGCAA
                      ____________________________________________________________
consensus             GAAACAACCCGATCACACCCAAACTACCAAAAATCACACTAGGTAACCTGGAGAAAGCAA
 
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JMSF036H04+           AACCCTGGGAAGAACTGAGCAGAACCCAGATACAAAAATGCAGAAACCACTACAATCTAG
JMSF003M21+           AACCCTGGGAAGAACTGAGCAGAACCCAGATACAAAAATGCAGAAACCACTACAATCTAG
                      ____________________________________________________________
consensus             AACCCTGGGAAGAACTGAGCAGAACCCAGATACAAAAATGCAGAAACCACTACAATCTAG
 
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JMSF036H04+           AGCTTAAACTCTGCTACCCTGAAGCTAAAAACCCAAGAAAATGAAAACCCAGGGAGAATC
JMSF003M21+           AGCTTAAACTCTGCTACCCTGAAGCTAAAAACCCAAGAAAATGAAAACCCAGGGAGAATC
                      ____________________________________________________________
consensus             AGCTTAAACTCTGCTACCCTGAAGCTAAAAACCCAAGAAAATGAAAACCCAGGGAGAATC
 
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JMSF036H04+           AGAGAAAATTTAGGACAGACGGGGGGATTTGGGTAAGGATTGCGGACACCGACTTGCAGA
JMSF003M21+           AGAGAAAATTTAGGACAGACGGGGGGATTTGGGTAAGGATTGCGGACACCGACTTGCAGA
                      ____________________________________________________________
consensus             AGAGAAAATTTAGGACAGACGGGGGGATTTGGGTAAGGATTGCGGACACCGACTTGCAGA
 
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JMSF036H04+           GAGGATGAGAGAGAACCGACAGAGCGAAGAGAGTCGAGGCTGATCTAGAATGCTATAACC
JMSF003M21+           GAGGATGAGAGAGAACCGACAGAGCGAAGAGAGTCGAGGCTGATCTAGAATGCTATAACC
                      ____________________________________________________________
consensus             GAGGATGAGAGAGAACCGACAGAGCGAAGAGAGTCGAGGCTGATCTAGAATGCTATAACC