| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN005O13 | Sequence | 577 | 000567 (13) | gb|KJB83793.1| | 3e-58 | hypothetical protein B456_013G264900 [Gossypium raimondii] | |||||
| JMFN032L18 | Sequence | 613 | 000567 (13) | gb|KJB83793.1| | 2e-57 | hypothetical protein B456_013G264900 [Gossypium raimondii] | |||||
| JMSF002O15 | Sequence | 238 | 000567 (13) | ||||||||
| JMSF003E08 | Sequence | 384 | 000567 (13) | gb|KJB83793.1| | 1e-28 | hypothetical protein B456_013G264900 [Gossypium raimondii] | |||||
| JMSF003I21 | Sequence | 393 | 000567 (13) | gb|KJB83793.1| | 9e-31 | hypothetical protein B456_013G264900 [Gossypium raimondii] | |||||
| JMSF012B11 | Sequence | 445 | 000567 (13) | gb|KJB83793.1| | 8e-44 | hypothetical protein B456_013G264900 [Gossypium raimondii] | |||||
| JMSF022L03 | Sequence | 563 | 000567 (13) | gb|KJB83793.1| | 6e-61 | hypothetical protein B456_013G264900 [Gossypium raimondii] | |||||
| JMSF023E12 | Sequence | 358 | 000567 (13) | ref|XP_010535539.1| | 1e-58 | PREDICTED: histone H2B.11-like [Tarenaya hassleriana] | |||||
| JMSF024N03 | Sequence | 560 | 000567 (13) | gb|KJB83793.1| | 6e-61 | hypothetical protein B456_013G264900 [Gossypium raimondii] | 162 | 023535 | |||
| JMSF031H09 | Sequence | 561 | 000567 (13) | gb|KJB83793.1| | 6e-61 | hypothetical protein B456_013G264900 [Gossypium raimondii] | |||||
| JMSF037K01 | Sequence | 562 | 000567 (13) | gb|KJB83793.1| | 6e-61 | hypothetical protein B456_013G264900 [Gossypium raimondii] | |||||
| JMSF042L06 | Sequence | 562 | 000567 (13) | gb|KJB83793.1| | 6e-61 | hypothetical protein B456_013G264900 [Gossypium raimondii] | 792 | 011402 (9) | ref|XP_011086055.1| | 3e-91 | PREDICTED: 30S ribosomal protein S5, chloroplastic [Sesamum indicum] |
| JMSF044F05 | Sequence | 597 | 000567 (13) | gb|KJB83793.1| | 9e-61 | hypothetical protein B456_013G264900 [Gossypium raimondii] | 122 | 019421 | |||
This contig is upended
. : . : . : . : . : . :
JMSF044F05+ CNTTAACGGGGAATCNGGGAANGAAACCCTAGATNCCAAAAAAAAAAAAAAAAATTA
JMSF024N03+ AAAAAAAAAAAAAAATTA
JMSF037K01+ CCAAAAAAAAAAAAAAAAATTA
JMSF031H09+ CAAAAAAAAAAAAAAAAATTA
JMSF042L06+ AAAAAAAAAAAAAAAATTA
JMSF023E12+ AAAAAAAAAAAAAAAATTA
JMSF022L03+ AAAAAAAAAAAAAAAAATTA
____________________________________________________________
consensus CNTTAACGGGGAATCNGGGAANGAAACCCTAGATNCCAAAAAAAAAAAAAAAAATTA
. : . : . : . : . : . :
JMSF044F05+ AAAAAACACAAATTCTGTAACATTCTAGGAGCTAGTGAACTTGGTTACCGCCTTGGTGCC
JMSF024N03+ AAAAAACACAAATTCTGTAACATTCTAGGAGCTAGTGAACTTGGTTACCGCCTTGGTGCC
JMFN005O13+ CAAATTCTGTAACATTCTAGGAGCTAGTGAACTTGGTTACCGCCTTGGTGCC
JMFN032L18+ CAAATTCTGTAACATTCTAGGAGCTAGTGAACTTGGTTACCGCCTTGGTGCC
JMSF037K01+ AAAAAACACAAATTCTGTAACATTCTAGGAGCTAGTGAACTTGGTTACCGCCTTGGTGCC
JMSF031H09+ AAAAAACACAAATTCTGTAACATTCTAGGAGCTAGTGAACTTGGTTACCGCCTTGGTGCC
JMSF042L06+ AAAAAACACAAATTCTGTAACATTCTAGGAGCTAGTGAACTTGGTTACCGCCTTGGTGCC
JMSF023E12+ AAAAAACACAAATTCTGTAACATTCTAGGAGCTAGTGAACTTGGTTACCGCCTTGGTGCC
JMSF022L03+ AAAAAACACAAATTCTGTAACATTCTAGGAGCTAGTGAACTTGGTTACCGCCTTGGTGCC
____________________________________________________________
consensus AAAAAACACAAATTCTGTAACATTCTAGGAGCTAGTGAACTTGGTTACCGCCTTGGTGCC
. : . : . : . : . : . :
JMSF044F05+ TTCAGAGACGGCGTGTTTAGCCAATTCTCCGGGAAGAACCAAGCGCACGGCGGTCTGGAT
JMSF024N03+ TTCAGAGACGGCGTGTTTAGCCAATTCTCCGGGAAGAACCAAGCGCACGGCGGTCTGGAT
JMFN005O13+ TTCAGAGACGGCGTGTTTAGCCAATTCTCCGGGAAGAACCAAGCGCACGGCGGTCTGGAT
JMFN032L18+ TTCAGAGACGGCGTGTTTAGCCAATTCTCCGGGAAGAACCAAGCGCACGGCGGTCTGGAT
JMSF012B11+ GAACCAAGCGCACGGCGGTCTGGAT
JMSF037K01+ TTCAGAGACGGCGTGTTTAGCCAATTCTCCGGGAAGAACCAAGCGCACGGCGGTCTGGAT
JMSF031H09+ TTCAGAGACGGCGTGTTTAGCCAATTCTCCGGGAAGAACCAAGCGCACGGCGGTCTGGAT
JMSF042L06+ TTCAGAGACGGCGTGTTTAGCCAATTCTCCGGGAAGAACCAAGCGCACGGCGGTCTGGAT
JMSF023E12+ TTCAGAGACGGCGTGTTTAGCCAATTCTCCGGGAAGAACCAAGCGCACGGCGGTCTGGAT
JMSF022L03+ TTCAGAGACGGCGTGTTTAGCCAATTCTCCGGGAAGAACCAAGCGCACGGCGGTCTGGAT
____________________________________________________________
consensus TTCAGAGACGGCGTGTTTAGCCAATTCTCCGGGAAGAACCAAGCGCACGGCGGTCTGGAT
. : . : . : . : . : . :
JMSF044F05+ CTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGACGAGAAGCCTCCTGAGC
JMSF024N03+ CTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGACGAGAAGCCTCCTGAGC
JMFN005O13+ CTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGACGAGAAGCCTCCTGAGC
JMFN032L18+ CTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGACGAGAAGCCTCCTGAGC
JMSF012B11+ CTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGACGAGAAGCCTCCTGAGC
JMSF037K01+ CTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGACGAGAAGCCTCCTGAGC
JMSF031H09+ CTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGACGAGAAGCCTCCTGAGC
JMSF042L06+ CTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGACGAGAAGCCTCCTGAGC
JMSF003E08+ GGCAAGACGAGAAGCCTCCTGAGC
JMSF023E12+ CTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGACGAGAAGCCTCCTGAGC
JMSF022L03+ CTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGACGAGAAGCCTCCTGAGC
JMSF003I21+ GTTGTAGCGGNCAAGACGAGAAGCCTCCTGAGC
____________________________________________________________
consensus CTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGACGAGAAGCCTCCTGAGC
. : . : . : . : . : . :
JMSF044F05+ AAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTAGAGAT
JMSF024N03+ AAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTAGAGAT
JMFN005O13+ AAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTAGAGAT
JMFN032L18+ AAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTAGAGAT
JMSF012B11+ AAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTAGAGAT
JMSF037K01+ AAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTAGAGAT
JMSF031H09+ AAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTAGAGAT
JMSF042L06+ AAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTAGAGAT
JMSF003E08+ AAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTAGAGAT
JMSF023E12+ AAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTAGAGAT
JMSF022L03+ AAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTAGAGAT
JMSF003I21+ AAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTAGAGAT
____________________________________________________________
consensus AAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTAGAGAT
. : . : . : . : . : . :
JMSF044F05+ TCCAATGTCCGGATGCACTTGCTTCAGCACCTTGAAGATGTAGATCTTATAGGTCTCCGT
JMSF024N03+ TCCAATGTCCGGATGCACTTGCTTCAGCACCTTGAAGATGTAGATCTTATAGGTCTCCGT
JMFN005O13+ TCCAATGTCCGGATGCACTTGCTTCAGCACCTTGAAGATGTAGATCTTATAGGTCTCCGT
JMFN032L18+ TCCAATGTCCGGATGCACTTGCTTCAGCACCTTGAAGATGTAGATCTTATAGGTCTCCGT
JMSF012B11+ TCCAATGTCCGGATGCACTTGCTTCAGCACCTTGAAGATGTAGATCTTATAGGTCTCCGT
JMSF002O15+ CGT
JMSF037K01+ TCCAATGTCCGGATGCACTTGCTTCAGCACCTTGAAGATGTAGATCTTATAGGTCTCCGT
JMSF031H09+ TCCAATGTCCGGATGCACTTGCTTCAGCACCTTGAAGATGTAGATCTTATAGGTCTCCGT
JMSF042L06+ TCCAATGTCCGGATGCACTTGCTTCAGCACCTTGAAGATGTAGATCTTATAGGTCTCCGT
JMSF003E08+ TCCAATGTCCGGATGCACTTGCTTCAGCACCTTGAAGATGTAGATCTTATAGGTCTCCGT
JMSF023E12+ TCCAATGTCCGGATGCACTTGCTTCAGCACCTTGAAGATGTAGATCTTATAGGTCTC
JMSF022L03+ TCCAATGTCCGGATGCACTTGCTTCAGCACCTTGAAGATGTAGATCTTATAGGTCTCCGT
JMSF003I21+ TCCAATGTCCGGATGCACTTGCTTCAGCACCTTGAAGATGTAGATCTTATAGGTCTCCGT
____________________________________________________________
consensus TCCAATGTCCGGATGCACTTGCTTCAGCACCTTGAAGATGTAGATCTTATAGGTCTCCGT
. : . : . : . : . : . :
JMSF044F05+ CGACTTCTTCGTCCTCTTCTTCTTCTTCTCTCCCGCCGCCGCAGCTCCGCCTTCCTTCGG
JMSF024N03+ CGACTTCTTCGTCCTCTTCTTCTTCTTCTCTCCCGCCGCCGCAGCTCCGCCTTCCTTCGG
JMFN005O13+ CGACTTCTTCGTCCTCTTCTTCTTCTTCTCTCCCGCCGCCGCAGCTCCGCCTTCCTTCGG
JMFN032L18+ CGACTTCTTCGTCCTCTTCTTCTTCTTCTCTCCCGCCGCCGCAGCTCCGCCTTCCTTCGG
JMSF012B11+ CGACTTCTTCGTCCTCTTCTTCTTCTTCTCTCCCGCCGCCGCAGCTCCGCCTTCCTTCGG
JMSF002O15+ CGACTTCTTCGTCCTCTTCTTCTTCTTCTCTCCCGCCGCCGCAGCTCCGCCTTCCTTCGG
JMSF037K01+ CGACTTCTTCGTCCTCTTCTTCTTCTTCTCTCCCGCCGCCGCAGCTCCGCCTTCCTTCGG
JMSF031H09+ CGACTTCTTCGTCCTCTTCTTCTTCTTCTCTCCCGCCGCCGCAGCTCCGCCTTCCTTCGG
JMSF042L06+ CGACTTCTTCGTCCTCTTCTTCTTCTTCTCTCCCGCCGCCGCAGCTCCGCCTTCCTTCGG
JMSF003E08+ CGACTTCTTCGTCCTCTTCTTCTTCTTCTCTCCCGCCGCCGCAGCTCCGCCTTCCTTCGG
JMSF022L03+ CGACTTCTTCGTCCTCTTCTTCTTCTTCTCTCCCGCCGCCGCAGCTCCGCCTTCCTTCGG
JMSF003I21+ CGACTTCTTCGTCCTCTTCTTCTTCTTCTCTCCCGCCGCCGCAGCTCCGCCTTCCTTCGG
____________________________________________________________
consensus CGACTTCTTCGTCCTCTTCTTCTTCTTCTCTCCCGCCGCCGCAGCTCCGCCTTCCTTCGG
. : . : . : . : . : . :
JMSF044F05+ GAGCTTCTTCCCCGCCTTCGGCTTCTTCTCCGCCGGAGCTTTCTCGGCTGCTGGGGCCTT
JMSF024N03+ GAGCTTCTTCCCCGCCTTCGGCTTCTTCTCCGCCGGAGCTTTCTCGGCTGCTGGGGCCTT
JMFN005O13+ GAGCTTCTTCCCCGCCTTCGGCTTCTTCTCCGCCGGAGCTTTCTCGGCTGCTGGGGCCTT
JMFN032L18+ GAGCTTCTTCCCCGCCTTCGGCTTCTTCTCCGCCGGAGCTTTCTCGGCTGCTGGGGCCTT
JMSF012B11+ GAGCTTCTTCCCCGCCTTCGGCTTCTTCTCCGCCGGAGCTTTCTCGGCTGCTGGGGCCTT
JMSF002O15+ GAGCTTCTTCCCCGCCTTCGGCTTCTTCTCCGCCGGAGCTTTCTCGGCTGCTGGGGCCTT
JMSF037K01+ GAGCTTCTTCCCCGCCTTCGGCTTCTTCTCCGCCGGAGCTTTCTCGGCTGCTGGGGCCTT
JMSF031H09+ GAGCTTCTTCCCCGCCTTCGGCTTCTTCTCCGCCGGAGCTTTCTCGGCTGCTGGGGCCTT
JMSF042L06+ GAGCTTCTTCCCCGCCTTCGGCTTCTTCTCCGCCGGAGCTTTCTCGGCTGCTGGGGCCTT
JMSF003E08+ GAGCTTCTTCCCCGCCTTCGGCTTCTTCTCCGCCGGAGCTTTCTCGGCTGCTGGGGCCTT
JMSF022L03+ GAGCTTCTTCCCCGCCTTCGGCTTCTTCTCCGCCGGAGCTTTCTCGGCTGCTGGGGCCTT
JMSF003I21+ GAGCTTCTTCCCCGCCTTCGGCTTCTTCTCCGCCGGAGCTTTCTCGGCTGCTGGGGCCTT
____________________________________________________________
consensus GAGCTTCTTCCCCGCCTTCGGCTTCTTCTCCGCCGGAGCTTTCTCGGCTGCTGGGGCCTT
. : . : . : . : . : . :
JMSF044F05+ CTCCGCCGCCGCCTTCTTCTCCGCCTTTGGGGCCATTGAATCTACAGAAACACAAACGGT
JMSF024N03+ CTCCGCCGCCGCCTTCTTCTCCGCCTTTGGGGCCATTGAATCTACAGAAACACAAACGGT
JMFN005O13+ CTCCGCCGCCGCCTTCTTCTCCGCCTTTGGGGCCATTGAATCTACAGAAACACAAACGGT
JMFN032L18+ CTCCGCCGCCGCCTTCTTCTCCGCCTTTGGGGCCATTGAATCTACAGAAACACAAACGGT
JMSF012B11+ CTCCGCCGCCGCCTTCTTCTCCGCCTTTGGGGCCATTGAATCTACAGAAACACAAACGGT
JMSF002O15+ CTCCGCCGCCGCCTTCTTCTCCGCCTTTGGGGCCATTGAATCTACAGAAACACAAACGGT
JMSF037K01+ CTCCGCCGCCGCCTTCTTCTCCGCCTTTGGGGCCATTGAATCTACAGAAACACAAACGGT
JMSF031H09+ CTCCGCCGCCGCCTTCTTCTCCGCCTTTGGGGCCATTGAATCTACAGAAACACAAACGGT
JMSF042L06+ CTCCGCCGCCGCCTTCTTCTCCGCCTTTGGGGCCATTGAATCTACAGAAACACAAACGGT
JMSF003E08+ CTCCGCCGCCGCCTTCTTCTCCGCCTTTGGGGCCATTGAATCTACAGAAACACAAACGGT
JMSF022L03+ CTCCGCCGCCGCCTTCTTCTCCGCCTTTGGGGCCATTGAATCTACAGAAACACAAACGGT
JMSF003I21+ CTCCGCCGCCGCCTTCTTCTCCGCCTTTGGGGCCATTGAATCTACAGAAACACAAACGGT
____________________________________________________________
consensus CTCCGCCGCCGCCTTCTTCTCCGCCTTTGGGGCCATTGAATCTACAGAAACACAAACGGT
. : . : . : . : . : . :
JMSF044F05+ GCTTGAAACTAAGAGATTAGATCAAAGTTAGGTTGAGTGGAGCGAAAGGCTATCAG
JMSF024N03+ GCTTGAAACTAAGAGATTAGATCAAAGTTAGGTTGAGTGGAGCGAAAGGCTATCAGCG
JMFN005O13+ GCTTGAAACTAA
JMFN032L18+ GCTTGAAACTAAGAGATTAGATCAAAGTTAGGTTGAG
JMSF012B11+ GCTTGAAACTAAGAGATTAGATCAAAGTTAGGTTGAGTGGAGCGAAAGGCTATCAGCG
JMSF002O15+ GCTTGAAACTAAGAGATTAGATCAAAGTTAGGTTGAGTGGAGCGAAAGGCTATC
JMSF037K01+ GCTTGAAACTAAGAGATTAGATCAAAGTTAGGTTGAGTGGAGCGAAAGGCTATCAGCG
JMSF031H09+ GCTTGAAACTAAGAGATTAGATCAAAGTTAGGTTGAGTGGAGCGAAAGGCTATCAGCGTC
JMSF042L06+ GCTTGAAACTAAGAGATTAGATCAAAGTTAGGTTGAGTGGAGCGAAAGGCTATCAGCGTC
JMSF003E08+ GCTTGAAACTAAGAGATTAGATCAAAGTTAGGTTGAGTGGAGCGAAAGGCTATCAGCGTC
JMSF022L03+ GCTTGAAACTAAGAGATTAGATCAAAGTTAGGTTGAGTGGAGCGAAAGGCTATCAGCGTC
JMSF003I21+ GCTTGAAACTAAGAGATTAGATCAAAGTTAGGTTGAGTGGAGCGAAAGGCTATCAGCGTC
____________________________________________________________
consensus GCTTGAAACTAAGAGATTAGATCAAAGTTAGGTTGAGTGGAGCGAAAGGCTATCAGCGTC